jgi.p|Nanoce1779_2|586568, mRNA_4109 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586568
Unique NamemRNA_4109
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1117
Alignment locationscaffold_8:857136..858252 -

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Properties
Property NameValue
TranscriptId586654
TrackFilteredModels2
ProteinId586568
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:857136..858252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586568gene_4109Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586568mRNA_4109-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4109CDS_4109Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4109 ID=mRNA_4109|Name=jgi.p|Nanoce1779_2|586568|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp
GGGAGGGAGACATGGACGTCTTACATGCAATGGTCGCTCAACTCACTGAA
ATGGATCGGAGCCTCTTGGCGAGTGTTCGAATGGAGGGAGGGAGGGAGGG
AGAGTTGGATGCGAAGGCCACTATGAGGATGCCGGTGATGCAGGAAATGG
CGATTCAGACAGAGAAAGAGGGAGACGCTATATTGAGTGTCAATGTGAGT
GCTCCTACTGTACCTGTGATTTCTTTTGATTCGTCCTTCAGGTCTCCTGC
TTCTTCTCCTTCTCCTCTTTTTGCTCGTCGAATGGCGATGGGTGAGAGGG
TAACGAGGGCGATGACCACGGACGAGGAGGAGAAAGAGGAGGAAGAGGAG
ACAGAGAAGGGAGATGAGGTGGAGGAAGAGGGGGAGGAAGAGGGGGGGGA
GTTAAAAGACGGGAAAGGGAGCAAGAGGAAAGAGCATGAAGACGAGGAGA
GCTGGTCAGGGCCAAGATTGAAGAAGGAGGGTAGAGAGCAGAAGGCATTT
TCCTTGTCTCGAAGCCGTGCCATGGGTATCCGTACGGAGCATGACAGCGC
CTCCAGTGGCAGCAATACCGACAGCGACAACATCAGAACGACGAATCATT
CCTCTGCCATCGGTATTTCTACAGAAGCAGCAGCCACTACCGGGAGCCCC
TGCCGAAGACCTCAGAAGCAAAAGATGGCTCTGGCGGACCTCAGCCACAG
TTACAACAACAGCCGATCTATAAGCACCAGCGACAACAGCGGCAAGATGA
TCGAAAAGATGAGGAGAAGGATGGGATTTGAGAAGGAACGGGAGAAGGGG
GAGATGGATGCAGAGGGAAGGATACCCCGCTACAGGCGGTATCTTCAGTA
TTCAGACGAGGAGACGGATCGAATAGCCAGAATCATGATGGGTAAATCAC
GCCTTTCGTTGTCTTCAGCTTCGGCAGCGTTCTCGGCGTCGGGGGGGTCT
CGGGCTTTTGCCTCGTCTTATTATTCCTCAAGAGGATAAAAGGAGGAAAA
AGAGAAGGAGGGAGTGGGAGGAGGTGGTCGCCAGACATATGAATGTGCAT
TTGTACAGCCCGACTCAAATGAAGATAAAATAAATAGCCTGCGTATGAAG
ATTTATACTATCTGTAG
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protein sequence of jgi.p|Nanoce1779_2|586568

>mRNA_4109-protein ID=mRNA_4109-protein|Name=jgi.p|Nanoce1779_2|586568|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MDVLHAMVAQLTEMDRSLLASVRMEGGREGELDAKATMRMPVMQEMAIQT
EKEGDAILSVNVSAPTVPVISFDSSFRSPASSPSPLFARRMAMGERVTRA
MTTDEEEKEEEEETEKGDEVEEEGEEEGGELKDGKGSKRKEHEDEESWSG
PRLKKEGREQKAFSLSRSRAMGIRTEHDSASSGSNTDSDNIRTTNHSSAI
GISTEAAATTGSPCRRPQKQKMALADLSHSYNNSRSISTSDNSGKMIEKM
RRRMGFEKEREKGEMDAEGRIPRYRRYLQYSDEETDRIARIMMGKSRLSL
SSASAAFSASGGSRAFASSYYSSRG*
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mRNA from alignment at scaffold_8:857136..858252-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4109 ID=mRNA_4109|Name=jgi.p|Nanoce1779_2|586568|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp|location=Sequence derived from alignment at scaffold_8:857136..858252- (Nannochloropsis oceanica)
GGGAGGGAGACATGGACGTCTTACATGCAATGGTCGCTCAACTCACTGAA
ATGGATCGGAGCCTCTTGGCGAGTGTTCGAATGGAGGGAGGGAGGGAGGG
AGAGTTGGATGCGAAGGCCACTATGAGGATGCCGGTGATGCAGGAAATGG
CGATTCAGACAGAGAAAGAGGGAGACGCTATATTGAGTGTCAATGTGAGT
GCTCCTACTGTACCTGTGATTTCTTTTGATTCGTCCTTCAGGTCTCCTGC
TTCTTCTCCTTCTCCTCTTTTTGCTCGTCGAATGGCGATGGGTGAGAGGG
TAACGAGGGCGATGACCACGGACGAGGAGGAGAAAGAGGAGGAAGAGGAG
ACAGAGAAGGGAGATGAGGTGGAGGAAGAGGGGGAGGAAGAGGGGGGGGA
GTTAAAAGACGGGAAAGGGAGCAAGAGGAAAGAGCATGAAGACGAGGAGA
GCTGGTCAGGGCCAAGATTGAAGAAGGAGGGTAGAGAGCAGAAGGCATTT
TCCTTGTCTCGAAGCCGTGCCATGGGTATCCGTACGGAGCATGACAGCGC
CTCCAGTGGCAGCAATACCGACAGCGACAACATCAGAACGACGAATCATT
CCTCTGCCATCGGTATTTCTACAGAAGCAGCAGCCACTACCGGGAGCCCC
TGCCGAAGACCTCAGAAGCAAAAGATGGCTCTGGCGGACCTCAGCCACAG
TTACAACAACAGCCGATCTATAAGCACCAGCGACAACAGCGGCAAGATGA
TCGAAAAGATGAGGAGAAGGATGGGATTTGAGAAGGAACGGGAGAAGGGG
GAGATGGATGCAGAGGGAAGGATACCCCGCTACAGGCGGTATCTTCAGTA
TTCAGACGAGGAGACGGATCGAATAGCCAGAATCATGATGGGTAAATCAC
GCCTTTCGTTGTCTTCAGCTTCGGCAGCGTTCTCGGCGTCGGGGGGGTCT
CGGGCTTTTGCCTCGTCTTATTATTCCTCAAGAGGATAAAAGGAGGAAAA
AGAGAAGGAGGGAGTGGGAGGAGGTGGTCGCCAGACATATGAATGTGCAT
TTGTACAGCCCGACTCAAATGAAGATAAAATAAATAGCCTGCGTATGAAG
ATTTATACTATCTGTAG
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Coding sequence (CDS) from alignment at scaffold_8:857136..858252-

>mRNA_4109 ID=mRNA_4109|Name=jgi.p|Nanoce1779_2|586568|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_8:857136..858252- (Nannochloropsis oceanica)
ATGGACGTCTTACATGCAATGGTCGCTCAACTCACTGAAATGGATCGGAG
CCTCTTGGCGAGTGTTCGAATGGAGGGAGGGAGGGAGGGAGAGTTGGATG
CGAAGGCCACTATGAGGATGCCGGTGATGCAGGAAATGGCGATTCAGACA
GAGAAAGAGGGAGACGCTATATTGAGTGTCAATGTGAGTGCTCCTACTGT
ACCTGTGATTTCTTTTGATTCGTCCTTCAGGTCTCCTGCTTCTTCTCCTT
CTCCTCTTTTTGCTCGTCGAATGGCGATGGGTGAGAGGGTAACGAGGGCG
ATGACCACGGACGAGGAGGAGAAAGAGGAGGAAGAGGAGACAGAGAAGGG
AGATGAGGTGGAGGAAGAGGGGGAGGAAGAGGGGGGGGAGTTAAAAGACG
GGAAAGGGAGCAAGAGGAAAGAGCATGAAGACGAGGAGAGCTGGTCAGGG
CCAAGATTGAAGAAGGAGGGTAGAGAGCAGAAGGCATTTTCCTTGTCTCG
AAGCCGTGCCATGGGTATCCGTACGGAGCATGACAGCGCCTCCAGTGGCA
GCAATACCGACAGCGACAACATCAGAACGACGAATCATTCCTCTGCCATC
GGTATTTCTACAGAAGCAGCAGCCACTACCGGGAGCCCCTGCCGAAGACC
TCAGAAGCAAAAGATGGCTCTGGCGGACCTCAGCCACAGTTACAACAACA
GCCGATCTATAAGCACCAGCGACAACAGCGGCAAGATGATCGAAAAGATG
AGGAGAAGGATGGGATTTGAGAAGGAACGGGAGAAGGGGGAGATGGATGC
AGAGGGAAGGATACCCCGCTACAGGCGGTATCTTCAGTATTCAGACGAGG
AGACGGATCGAATAGCCAGAATCATGATGGGTAAATCACGCCTTTCGTTG
TCTTCAGCTTCGGCAGCGTTCTCGGCGTCGGGGGGGTCTCGGGCTTTTGC
CTCGTCTTATTATTCCTCAAGAGGATAA
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Synonyms
Publications