jgi.p|Nanoce1779_2|670293, mRNA_4106 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670293
Unique NamemRNA_4106
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1502
Alignment locationscaffold_8:849964..851465 -

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Properties
Property NameValue
TranscriptId670379
TrackFilteredModels2
ProteinId670293
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:849964..851465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670293gene_4106Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4106CDS_4106Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670293mRNA_4106-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4106 ID=mRNA_4106|Name=jgi.p|Nanoce1779_2|670293|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp
GGGGAGGGGAGGCTGGGGGCTGTTTTTGCGCCTGTTTTCTCCGTCGCCGC
ACGTCCTCCTATCAAAAGGGATGTCGCCGGACTATGACAAGAGATATAAG
GAACGTGAGTGATGCATTGATCTGGCGGAAGGAAACCAGGCGAGACATTC
GATTAGGAACGAATGTTGTGAGGGGGCCAAGAGCAGCGACGAAGCAAGTA
TCATCAGTAAGAGCCGTCGTCATCTGAGTTCGTGCAATCAGTGATTCCCC
AATACATATCCGCGCGACAAGCAGAGAGTGTTATAATACAAAGTAGTGGG
ACTGACATAAGTGCCCGTAATCCCGCCGCCTTGCTTGTCACGCGAAATTG
TAAGGCTGGTGGCCTCGCTGGGAAGCATTATGCTCTTTATGAGTGGCTTG
TTTCCTTGAGCGAGGATTCATTCTTCTCTCTGACTGGGGGCATGAACGAA
AGCAGTTGTCAAGTAAGCGAAGTCGCCTTCGTACACACGGGTACATTCAG
CCATAAATGGTTTGATGATAACCGCTTGTAGAGTCTACCTGTGAAATCTA
GCGCTTCTTCCTTCAGGAGGACACCCTTAACACTCTAACCCCCTCTCTAT
CCTCATGCACTCACACTCGTAGGGCTACGCACACTTACGGAGAGCTCAAT
TACTAATAACTAACTTGCTTTTGCCCCAGTCGTCATCATCTGTGCTCCCC
AGCCGCTTTCAACATCCCTGCCATGCCACCCGTTCATCGTGGCGCTCCTC
CTCGTCGTCCTCCGCACCCACAACCACCTGGTCAAGTCCAATCCCAAAAC
CCCACCAAATGGTACACCCTCGCCTGCACCATCGCCTTCGAGCTGAGGCC
CTTCACCCCTCCCACGCGTCGCGACCTCCATAGCTTCGTTCACTCCACCC
GCCAAACCCTCTCTCTCATTTGCGCCGAAACATATCACTTCATCCGCTTC
GTCTCCCCCTTAGTCCGTCGGGTGGGCCGCAACCTCACGTCGTGGCGTTA
CCTCCTCCCACTCACCGCCTTCTCTAGCGCATTTTATCTTGCCGTGCGGG
CAGAGTTTGGGGTTGTCTTTCTCATAATAGCGGCCTTGTCATTGATTTTG
ACGGTAGGTTTGGGTGATGATGCGAGTTTGGAGGGGGAGGGAAAAATAAG
TCCTTGGAGTGTCTTCAATCGAGGAATGGCTACGATGATGGGGGCGATTA
ATCCCGAGCAGTTTGAAGCGGAGATAAGAAATTACCAATTAGTGGGGGAG
GGAGCTTTGGGTGGGATGGTGGGAGGAGAGCGGATGGAAATGGAGGAGGA
GGAGGAGGAGGAGGAGGATGAGGGGCGGGAGGAGGAAAGGGGGGGAGGAG
GGGGTGGAGGAAGGGGTCCGTCGAGGAAGAGTGGGAAAAAGGCGCGAAGG
AAGTTTGATCGGGATAGGAGGAGGGAACGGATGTTGTTGGCGGCCGGAGG
TGGGGGGGAAGAGTGGGAGGAGGACTGGGTCTCGGATGAGGGGGAAGGTT
GA
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protein sequence of jgi.p|Nanoce1779_2|670293

>mRNA_4106-protein ID=mRNA_4106-protein|Name=jgi.p|Nanoce1779_2|670293|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MPPVHRGAPPRRPPHPQPPGQVQSQNPTKWYTLACTIAFELRPFTPPTRR
DLHSFVHSTRQTLSLICAETYHFIRFVSPLVRRVGRNLTSWRYLLPLTAF
SSAFYLAVRAEFGVVFLIIAALSLILTVGLGDDASLEGEGKISPWSVFNR
GMATMMGAINPEQFEAEIRNYQLVGEGALGGMVGGERMEMEEEEEEEEDE
GREEERGGGGGGGRGPSRKSGKKARRKFDRDRRRERMLLAAGGGGEEWEE
DWVSDEGEG*
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mRNA from alignment at scaffold_8:849964..851465-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4106 ID=mRNA_4106|Name=jgi.p|Nanoce1779_2|670293|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp|location=Sequence derived from alignment at scaffold_8:849964..851465- (Nannochloropsis oceanica)
GGGGAGGGGAGGCTGGGGGCTGTTTTTGCGCCTGTTTTCTCCGTCGCCGC
ACGTCCTCCTATCAAAAGGGATGTCGCCGGACTATGACAAGAGATATAAG
GAACGTGAGTGATGCATTGATCTGGCGGAAGGAAACCAGGCGAGACATTC
GATTAGGAACGAATGTTGTGAGGGGGCCAAGAGCAGCGACGAAGCAAGTA
TCATCAGTAAGAGCCGTCGTCATCTGAGTTCGTGCAATCAGTGATTCCCC
AATACATATCCGCGCGACAAGCAGAGAGTGTTATAATACAAAGTAGTGGG
ACTGACATAAGTGCCCGTAATCCCGCCGCCTTGCTTGTCACGCGAAATTG
TAAGGCTGGTGGCCTCGCTGGGAAGCATTATGCTCTTTATGAGTGGCTTG
TTTCCTTGAGCGAGGATTCATTCTTCTCTCTGACTGGGGGCATGAACGAA
AGCAGTTGTCAAGTAAGCGAAGTCGCCTTCGTACACACGGGTACATTCAG
CCATAAATGGTTTGATGATAACCGCTTGTAGAGTCTACCTGTGAAATCTA
GCGCTTCTTCCTTCAGGAGGACACCCTTAACACTCTAACCCCCTCTCTAT
CCTCATGCACTCACACTCGTAGGGCTACGCACACTTACGGAGAGCTCAAT
TACTAATAACTAACTTGCTTTTGCCCCAGTCGTCATCATCTGTGCTCCCC
AGCCGCTTTCAACATCCCTGCCATGCCACCCGTTCATCGTGGCGCTCCTC
CTCGTCGTCCTCCGCACCCACAACCACCTGGTCAAGTCCAATCCCAAAAC
CCCACCAAATGGTACACCCTCGCCTGCACCATCGCCTTCGAGCTGAGGCC
CTTCACCCCTCCCACGCGTCGCGACCTCCATAGCTTCGTTCACTCCACCC
GCCAAACCCTCTCTCTCATTTGCGCCGAAACATATCACTTCATCCGCTTC
GTCTCCCCCTTAGTCCGTCGGGTGGGCCGCAACCTCACGTCGTGGCGTTA
CCTCCTCCCACTCACCGCCTTCTCTAGCGCATTTTATCTTGCCGTGCGGG
CAGAGTTTGGGGTTGTCTTTCTCATAATAGCGGCCTTGTCATTGATTTTG
ACGGTAGGTTTGGGTGATGATGCGAGTTTGGAGGGGGAGGGAAAAATAAG
TCCTTGGAGTGTCTTCAATCGAGGAATGGCTACGATGATGGGGGCGATTA
ATCCCGAGCAGTTTGAAGCGGAGATAAGAAATTACCAATTAGTGGGGGAG
GGAGCTTTGGGTGGGATGGTGGGAGGAGAGCGGATGGAAATGGAGGAGGA
GGAGGAGGAGGAGGAGGATGAGGGGCGGGAGGAGGAAAGGGGGGGAGGAG
GGGGTGGAGGAAGGGGTCCGTCGAGGAAGAGTGGGAAAAAGGCGCGAAGG
AAGTTTGATCGGGATAGGAGGAGGGAACGGATGTTGTTGGCGGCCGGAGG
TGGGGGGGAAGAGTGGGAGGAGGACTGGGTCTCGGATGAGGGGGAAGGTT
GA
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Coding sequence (CDS) from alignment at scaffold_8:849964..851465-

>mRNA_4106 ID=mRNA_4106|Name=jgi.p|Nanoce1779_2|670293|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_8:849964..851465- (Nannochloropsis oceanica)
ATGCCACCCGTTCATCGTGGCGCTCCTCCTCGTCGTCCTCCGCACCCACA
ACCACCTGGTCAAGTCCAATCCCAAAACCCCACCAAATGGTACACCCTCG
CCTGCACCATCGCCTTCGAGCTGAGGCCCTTCACCCCTCCCACGCGTCGC
GACCTCCATAGCTTCGTTCACTCCACCCGCCAAACCCTCTCTCTCATTTG
CGCCGAAACATATCACTTCATCCGCTTCGTCTCCCCCTTAGTCCGTCGGG
TGGGCCGCAACCTCACGTCGTGGCGTTACCTCCTCCCACTCACCGCCTTC
TCTAGCGCATTTTATCTTGCCGTGCGGGCAGAGTTTGGGGTTGTCTTTCT
CATAATAGCGGCCTTGTCATTGATTTTGACGGTAGGTTTGGGTGATGATG
CGAGTTTGGAGGGGGAGGGAAAAATAAGTCCTTGGAGTGTCTTCAATCGA
GGAATGGCTACGATGATGGGGGCGATTAATCCCGAGCAGTTTGAAGCGGA
GATAAGAAATTACCAATTAGTGGGGGAGGGAGCTTTGGGTGGGATGGTGG
GAGGAGAGCGGATGGAAATGGAGGAGGAGGAGGAGGAGGAGGAGGATGAG
GGGCGGGAGGAGGAAAGGGGGGGAGGAGGGGGTGGAGGAAGGGGTCCGTC
GAGGAAGAGTGGGAAAAAGGCGCGAAGGAAGTTTGATCGGGATAGGAGGA
GGGAACGGATGTTGTTGGCGGCCGGAGGTGGGGGGGAAGAGTGGGAGGAG
GACTGGGTCTCGGATGAGGGGGAAGGTTGA
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Synonyms
Publications