jgi.p|Nanoce1779_2|586559, mRNA_4105 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586559
Unique Name	mRNA_4105
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1825
Alignment location	scaffold_8:848054..849878 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586645
Track	FilteredModels2
ProteinId	586559

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:848054..849878 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586559	gene_4105	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586559	mRNA_4105-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4105	CDS_4105	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:848054..849878+
coding sequence from alignment at scaffold_8:848054..849878+

mRNA sequence

>mRNA_4105 ID=mRNA_4105|Name=jgi.p|Nanoce1779_2|586559|organism=Nannochloropsis oceanica|type=mRNA|length=1825bp
AGGGACATAATAAGGCAGCAGGGGACCAGCAGCACGGAAGGACGGTAGCG
CCGCCGCGACTCCGGAAGGCAGGCGTAGACGCGGGCGCAAGTGAGGAGAG
GAGAAGCTGTTGTTTTATGGTATGTCCAATCAGAGGACATGCGAGAGTGT
TTTGACAATTGCTCATTGCTGGCCATAGCATGGTCCACGTAATTTGCATG
GTCATACTGCACAGTAAAGCAGGATGTGTATGCTGGGGTGTTAAGGGCAC
AAATGCGAGGGATGGGCAAGGGCAGCGTGCGGGGAATGCAAATTAGGGCC
GCGTCGCTTACCACCCCTCACAACGCAAACCACTTTTCCCCGCCTTTCCT
TCACCCCTCCTCCTCCTTCTCCTCGCTCCCCCTCACACTACATCCACTTT
CAAGCCACCATATCTTTTCCAAACACATCCGCATGCCCAAGGATCCCCCT
CACCCTTCTCTCCCTCCCTTCCTCCCCTCCCTCCTCCCTCTTCAACCAGT
CATGTCCAGCACGGGCATCTTCGTCTTCACCCCCTACGGGAAGGGCGAGG
TGATGGGAACACGGAACGATGGGATTGTGATTGTACAGTTGAGAACATCC
CAGGATAAGCCCTATCTTGGTTATTTTCACCTGACTCAAGTGAGGCAGCT
GTCGAACAATGAGGAGAAGGATCAAAGAGGGATGATGAGTATAGACGAGA
ACGAGGACGAAAGAAATTGTCAAAAGCATGACGACATGCGGAAGAAGAGG
AGTATGGATGAAGTTGGGGAGGGGGGCTTGGGAGGAATGGCTATGCAGCC
GCAGCGTTTCAGGTGCTTCGGTGGGAATCCTTTCACGGACATGACGAATC
ATGATTAACGTGGAAGGAGGGATGCACGGAAGGAGAAGGTAATGGAGAGG
TCCTCAAAGGATTTCATCGCTGAAGCAGCAAATATGGAATGTAGTGGAAG
AAGGGGGGAAAGGAAGGAAGTGAGAGATGGAGGGAGGAGAGGGGGGAAGG
AGAATCAGTAGGGGCAGGCGCTTTGGTGGGGATCAAAGCTAAGGAAGGGA
GGGAGGGAGGATAGGAGGAAGGGAAGAGGAAGATGATTGTAATTTATGTG
TAGTGAGAAATACTGGACAATGTCTAATGGTGAAGAAATGAACGTAAAGA
TGAGGATGGAATGAAAACGGGGTGTTTTCGGTGCTTGGCCTGGGTTATCA
TACCAGATGCGTACTTCCGTGTGTGTACGAAGAGGTGGGGAGGGAAGGCG
TCAGTGAAAAGTGTTTGAGTGTAAGTTCGCGTAAGGAAGAACACCAATAC
GAGCAAGAGATAGAGGTCGAGATAGAGAGACAGGAAAGGCTCGCCTGCGT
TCCTTTTTGTAGAAAAAAACACCACGCGTTAAGTTTCAAAATCTGTGTGA
GAGAGCATGTGTGTGTAATTCGTGCTTGTTTATGTGTGTTTATGTGTGTT
TATGTGTGTGATAGAAACAGAAATACCGGGAAAGAAAGAGACGGAAAGTG
AAAGGGAAAGAGAGAGGAGATGGGTTGGTATGGCCAGGGGGCACGGAGAA
ACTCTAGTTACGGATGGAGGGTCAAGAAAGAAGGAGGGGAGGAGAACAAC
GACAGAAGCAGGAGCAGCAACAGAAGTAGCAACGGTAAAAAGATTAAACG
GTAGGCAGCGAAAAATGAAATAGCGACAGAAAGGTAAATGCGCACACATT
CACACACACACACACACACAGACTCACACACAAGAACGAAGGGAAGTAAA
AGAGGGAGATAAAGCATCAGTGGGTTGATGACAAAGAATGACGCTAACGA
GGAAACAAGGCAAATGTCGTCAGCC

protein sequence of jgi.p|Nanoce1779_2|586559

>mRNA_4105-protein ID=mRNA_4105-protein|Name=jgi.p|Nanoce1779_2|586559|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MRGMGKGSVRGMQIRAASLTTPHNANHFSPPFLHPSSSFSSLPLTLHPLS
SHHIFSKHIRMPKDPPHPSLPPFLPSLLPLQPVMSSTGIFVFTPYGKGEV
MGTRNDGIVIVQLRTSQDKPYLGYFHLTQVRQLSNNEEKDQRGMMSIDEN
EDERNCQKHDDMRKKRSMDEVGEGGLGGMAMQPQRFRCFGGNPFTDMTNH
D*

mRNA from alignment at scaffold_8:848054..849878+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4105 ID=mRNA_4105|Name=jgi.p|Nanoce1779_2|586559|organism=Nannochloropsis oceanica|type=mRNA|length=1825bp|location=Sequence derived from alignment at scaffold_8:848054..849878+ (Nannochloropsis oceanica)
AGGGACATAATAAGGCAGCAGGGGACCAGCAGCACGGAAGGACGGTAGCG
CCGCCGCGACTCCGGAAGGCAGGCGTAGACGCGGGCGCAAGTGAGGAGAG
GAGAAGCTGTTGTTTTATGGTATGTCCAATCAGAGGACATGCGAGAGTGT
TTTGACAATTGCTCATTGCTGGCCATAGCATGGTCCACGTAATTTGCATG
GTCATACTGCACAGTAAAGCAGGATGTGTATGCTGGGGTGTTAAGGGCAC
AAATGCGAGGGATGGGCAAGGGCAGCGTGCGGGGAATGCAAATTAGGGCC
GCGTCGCTTACCACCCCTCACAACGCAAACCACTTTTCCCCGCCTTTCCT
TCACCCCTCCTCCTCCTTCTCCTCGCTCCCCCTCACACTACATCCACTTT
CAAGCCACCATATCTTTTCCAAACACATCCGCATGCCCAAGGATCCCCCT
CACCCTTCTCTCCCTCCCTTCCTCCCCTCCCTCCTCCCTCTTCAACCAGT
CATGTCCAGCACGGGCATCTTCGTCTTCACCCCCTACGGGAAGGGCGAGG
TGATGGGAACACGGAACGATGGGATTGTGATTGTACAGTTGAGAACATCC
CAGGATAAGCCCTATCTTGGTTATTTTCACCTGACTCAAGTGAGGCAGCT
GTCGAACAATGAGGAGAAGGATCAAAGAGGGATGATGAGTATAGACGAGA
ACGAGGACGAAAGAAATTGTCAAAAGCATGACGACATGCGGAAGAAGAGG
AGTATGGATGAAGTTGGGGAGGGGGGCTTGGGAGGAATGGCTATGCAGCC
GCAGCGTTTCAGGTGCTTCGGTGGGAATCCTTTCACGGACATGACGAATC
ATGATTAACGTGGAAGGAGGGATGCACGGAAGGAGAAGGTAATGGAGAGG
TCCTCAAAGGATTTCATCGCTGAAGCAGCAAATATGGAATGTAGTGGAAG
AAGGGGGGAAAGGAAGGAAGTGAGAGATGGAGGGAGGAGAGGGGGGAAGG
AGAATCAGTAGGGGCAGGCGCTTTGGTGGGGATCAAAGCTAAGGAAGGGA
GGGAGGGAGGATAGGAGGAAGGGAAGAGGAAGATGATTGTAATTTATGTG
TAGTGAGAAATACTGGACAATGTCTAATGGTGAAGAAATGAACGTAAAGA
TGAGGATGGAATGAAAACGGGGTGTTTTCGGTGCTTGGCCTGGGTTATCA
TACCAGATGCGTACTTCCGTGTGTGTACGAAGAGGTGGGGAGGGAAGGCG
TCAGTGAAAAGTGTTTGAGTGTAAGTTCGCGTAAGGAAGAACACCAATAC
GAGCAAGAGATAGAGGTCGAGATAGAGAGACAGGAAAGGCTCGCCTGCGT
TCCTTTTTGTAGAAAAAAACACCACGCGTTAAGTTTCAAAATCTGTGTGA
GAGAGCATGTGTGTGTAATTCGTGCTTGTTTATGTGTGTTTATGTGTGTT
TATGTGTGTGATAGAAACAGAAATACCGGGAAAGAAAGAGACGGAAAGTG
AAAGGGAAAGAGAGAGGAGATGGGTTGGTATGGCCAGGGGGCACGGAGAA
ACTCTAGTTACGGATGGAGGGTCAAGAAAGAAGGAGGGGAGGAGAACAAC
GACAGAAGCAGGAGCAGCAACAGAAGTAGCAACGGTAAAAAGATTAAACG
GTAGGCAGCGAAAAATGAAATAGCGACAGAAAGGTAAATGCGCACACATT
CACACACACACACACACACAGACTCACACACAAGAACGAAGGGAAGTAAA
AGAGGGAGATAAAGCATCAGTGGGTTGATGACAAAGAATGACGCTAACGA
GGAAACAAGGCAAATGTCGTCAGCC

Coding sequence (CDS) from alignment at scaffold_8:848054..849878+

>mRNA_4105 ID=mRNA_4105|Name=jgi.p|Nanoce1779_2|586559|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_8:848054..849878+ (Nannochloropsis oceanica)
ATGCGAGGGATGGGCAAGGGCAGCGTGCGGGGAATGCAAATTAGGGCCGC
GTCGCTTACCACCCCTCACAACGCAAACCACTTTTCCCCGCCTTTCCTTC
ACCCCTCCTCCTCCTTCTCCTCGCTCCCCCTCACACTACATCCACTTTCA
AGCCACCATATCTTTTCCAAACACATCCGCATGCCCAAGGATCCCCCTCA
CCCTTCTCTCCCTCCCTTCCTCCCCTCCCTCCTCCCTCTTCAACCAGTCA
TGTCCAGCACGGGCATCTTCGTCTTCACCCCCTACGGGAAGGGCGAGGTG
ATGGGAACACGGAACGATGGGATTGTGATTGTACAGTTGAGAACATCCCA
GGATAAGCCCTATCTTGGTTATTTTCACCTGACTCAAGTGAGGCAGCTGT
CGAACAATGAGGAGAAGGATCAAAGAGGGATGATGAGTATAGACGAGAAC
GAGGACGAAAGAAATTGTCAAAAGCATGACGACATGCGGAAGAAGAGGAG
TATGGATGAAGTTGGGGAGGGGGGCTTGGGAGGAATGGCTATGCAGCCGC
AGCGTTTCAGGTGCTTCGGTGGGAATCCTTTCACGGACATGACGAATCAT
GATTAA

Synonyms

Publications