jgi.p|Nanoce1779_2|629766, mRNA_4104 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629766
Unique NamemRNA_4104
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1440
Alignment locationscaffold_8:846130..847569 +

Link to JBrowse

Properties
Property NameValue
TranscriptId629852
TrackFilteredModels2
ProteinId629766
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:846130..847569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629766gene_4104Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629766mRNA_4104-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4104CDS_4104Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4104 ID=mRNA_4104|Name=jgi.p|Nanoce1779_2|629766|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp
CACCTCACTGCTTACTCACAAGCCCCTTACCACACGCACCATAGACGCAG
ACGCACTGCGATTATCGTAATAGTGCCACAAGATGGTGATTCGCGTGATG
GTGCCTGCGATGATTCTGGCTAGCCTTGGGTTGCTCTCTCATGGCTTTAT
TTTTCCTCCAGTGCGGCAGGGACAGGGAGGTCGACCCCTCCAATCAACCC
GGGACCAGACTCCAACCGCAATGACAGCGGTTCGACCAAAAGACAACAGC
AAAGGGGTAAAGATCACGCATGTAAAACGAATAAGAAGCAGCAGCTCCCG
CTCTACTGTGATTGACCGTCGGGGAATGTTCAAGACAGCCTCGGCAATGT
CATTGGGCTTGGTACTGGCCAGCCGCATGGAGCTGCCGTCATTGTCATCA
TCGTCAGCTGCCGACGCCGCAACACCTTCATTGCGACCACCATTGGTATC
AGAATTAGAAGTCTTATCTACAACACTTACAGTAGCTGACACTGGCACCA
CTATCAACGGAACGCCATCCTCGCCCCTCCAAGACTTCATCTCAGGCCTG
GCTGGCGGGGCCGCCTCCCGAGCAAGCAAAGAGCTGCTCCTCCACCCCAT
CGATACATGGAAAACACGCTTGCAATACGCCAAGGGTGACGAAGAGCCGG
CGGAGCTGTTTCGAAATCTCTATGATGGGGTGTGGCCGGCCTTGGTGGTT
GGCACCCCTGCTGGGGCAGCTTTTTTTGCCACGAAGGATGTACTCAAGGG
ACTTGCGAAGACCACCTTCGGGAGTAAATATCGGATCCTAACCACAATCG
GCGCTGTGTTTATTGCTAATTTCCCCTATTGGCTAATTCGGAACCCGGCG
GAAGTCCTCAAGACGCAGCAGCAGACGGGTTTGGTTGATAGTAGTACCGC
AGGGGTGATCGAGGCAGTGAAGGAAGAAGGGCTAGGGGGTCTCTATCGAG
GATATGCATCCAATATTGCGTATGCATTCCCAACGGATGCCATTAAATTT
GTCGTGTATGAAGCATTGCAAAACCAATTCACGCGGAAACTGAACCCTTT
GGAGTCGTCCGCTTTGGGCTCTGCGGCGAGCTCGGTGGCGCAGCTCATGT
CTACTCCTTTGGACGTGGTCAGGACGAGAATAATGACTGACTGTAAGTCT
ACAGGGGAGGCAGATGTGCCGACAGCGTCGGTTTGGAAGACGGCACGCAC
GATTGCGGCGGAGGAAGGGGTCGGGAAGTTGTTTAGTGGGCTGGTGCCAC
GCTTGACGAGGGCTTTTTTGAGTGGAGCGATTCAGTTTGGGTCCTATGAA
TTAACGAAAGGTGCATTCAGCAATGCGGGGAAGAAGTAAATGAGGGCAGT
AAGTAAAGGCAAACGTGAAGGACTTTGCTATAAACGGAGTTACCTTTGGA
AATGGCACAACAGTTGCCAACTTCGGTTTGGTGTTCTGCC
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protein sequence of jgi.p|Nanoce1779_2|629766

>mRNA_4104-protein ID=mRNA_4104-protein|Name=jgi.p|Nanoce1779_2|629766|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MVIRVMVPAMILASLGLLSHGFIFPPVRQGQGGRPLQSTRDQTPTAMTAV
RPKDNSKGVKITHVKRIRSSSSRSTVIDRRGMFKTASAMSLGLVLASRME
LPSLSSSSAADAATPSLRPPLVSELEVLSTTLTVADTGTTINGTPSSPLQ
DFISGLAGGAASRASKELLLHPIDTWKTRLQYAKGDEEPAELFRNLYDGV
WPALVVGTPAGAAFFATKDVLKGLAKTTFGSKYRILTTIGAVFIANFPYW
LIRNPAEVLKTQQQTGLVDSSTAGVIEAVKEEGLGGLYRGYASNIAYAFP
TDAIKFVVYEALQNQFTRKLNPLESSALGSAASSVAQLMSTPLDVVRTRI
MTDCKSTGEADVPTASVWKTARTIAAEEGVGKLFSGLVPRLTRAFLSGAI
QFGSYELTKGAFSNAGKK*
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mRNA from alignment at scaffold_8:846130..847569+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4104 ID=mRNA_4104|Name=jgi.p|Nanoce1779_2|629766|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp|location=Sequence derived from alignment at scaffold_8:846130..847569+ (Nannochloropsis oceanica)
CACCTCACTGCTTACTCACAAGCCCCTTACCACACGCACCATAGACGCAG
ACGCACTGCGATTATCGTAATAGTGCCACAAGATGGTGATTCGCGTGATG
GTGCCTGCGATGATTCTGGCTAGCCTTGGGTTGCTCTCTCATGGCTTTAT
TTTTCCTCCAGTGCGGCAGGGACAGGGAGGTCGACCCCTCCAATCAACCC
GGGACCAGACTCCAACCGCAATGACAGCGGTTCGACCAAAAGACAACAGC
AAAGGGGTAAAGATCACGCATGTAAAACGAATAAGAAGCAGCAGCTCCCG
CTCTACTGTGATTGACCGTCGGGGAATGTTCAAGACAGCCTCGGCAATGT
CATTGGGCTTGGTACTGGCCAGCCGCATGGAGCTGCCGTCATTGTCATCA
TCGTCAGCTGCCGACGCCGCAACACCTTCATTGCGACCACCATTGGTATC
AGAATTAGAAGTCTTATCTACAACACTTACAGTAGCTGACACTGGCACCA
CTATCAACGGAACGCCATCCTCGCCCCTCCAAGACTTCATCTCAGGCCTG
GCTGGCGGGGCCGCCTCCCGAGCAAGCAAAGAGCTGCTCCTCCACCCCAT
CGATACATGGAAAACACGCTTGCAATACGCCAAGGGTGACGAAGAGCCGG
CGGAGCTGTTTCGAAATCTCTATGATGGGGTGTGGCCGGCCTTGGTGGTT
GGCACCCCTGCTGGGGCAGCTTTTTTTGCCACGAAGGATGTACTCAAGGG
ACTTGCGAAGACCACCTTCGGGAGTAAATATCGGATCCTAACCACAATCG
GCGCTGTGTTTATTGCTAATTTCCCCTATTGGCTAATTCGGAACCCGGCG
GAAGTCCTCAAGACGCAGCAGCAGACGGGTTTGGTTGATAGTAGTACCGC
AGGGGTGATCGAGGCAGTGAAGGAAGAAGGGCTAGGGGGTCTCTATCGAG
GATATGCATCCAATATTGCGTATGCATTCCCAACGGATGCCATTAAATTT
GTCGTGTATGAAGCATTGCAAAACCAATTCACGCGGAAACTGAACCCTTT
GGAGTCGTCCGCTTTGGGCTCTGCGGCGAGCTCGGTGGCGCAGCTCATGT
CTACTCCTTTGGACGTGGTCAGGACGAGAATAATGACTGACTGTAAGTCT
ACAGGGGAGGCAGATGTGCCGACAGCGTCGGTTTGGAAGACGGCACGCAC
GATTGCGGCGGAGGAAGGGGTCGGGAAGTTGTTTAGTGGGCTGGTGCCAC
GCTTGACGAGGGCTTTTTTGAGTGGAGCGATTCAGTTTGGGTCCTATGAA
TTAACGAAAGGTGCATTCAGCAATGCGGGGAAGAAGTAAATGAGGGCAGT
AAGTAAAGGCAAACGTGAAGGACTTTGCTATAAACGGAGTTACCTTTGGA
AATGGCACAACAGTTGCCAACTTCGGTTTGGTGTTCTGCC
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Coding sequence (CDS) from alignment at scaffold_8:846130..847569+

>mRNA_4104 ID=mRNA_4104|Name=jgi.p|Nanoce1779_2|629766|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at scaffold_8:846130..847569+ (Nannochloropsis oceanica)
ATGGTGATTCGCGTGATGGTGCCTGCGATGATTCTGGCTAGCCTTGGGTT
GCTCTCTCATGGCTTTATTTTTCCTCCAGTGCGGCAGGGACAGGGAGGTC
GACCCCTCCAATCAACCCGGGACCAGACTCCAACCGCAATGACAGCGGTT
CGACCAAAAGACAACAGCAAAGGGGTAAAGATCACGCATGTAAAACGAAT
AAGAAGCAGCAGCTCCCGCTCTACTGTGATTGACCGTCGGGGAATGTTCA
AGACAGCCTCGGCAATGTCATTGGGCTTGGTACTGGCCAGCCGCATGGAG
CTGCCGTCATTGTCATCATCGTCAGCTGCCGACGCCGCAACACCTTCATT
GCGACCACCATTGGTATCAGAATTAGAAGTCTTATCTACAACACTTACAG
TAGCTGACACTGGCACCACTATCAACGGAACGCCATCCTCGCCCCTCCAA
GACTTCATCTCAGGCCTGGCTGGCGGGGCCGCCTCCCGAGCAAGCAAAGA
GCTGCTCCTCCACCCCATCGATACATGGAAAACACGCTTGCAATACGCCA
AGGGTGACGAAGAGCCGGCGGAGCTGTTTCGAAATCTCTATGATGGGGTG
TGGCCGGCCTTGGTGGTTGGCACCCCTGCTGGGGCAGCTTTTTTTGCCAC
GAAGGATGTACTCAAGGGACTTGCGAAGACCACCTTCGGGAGTAAATATC
GGATCCTAACCACAATCGGCGCTGTGTTTATTGCTAATTTCCCCTATTGG
CTAATTCGGAACCCGGCGGAAGTCCTCAAGACGCAGCAGCAGACGGGTTT
GGTTGATAGTAGTACCGCAGGGGTGATCGAGGCAGTGAAGGAAGAAGGGC
TAGGGGGTCTCTATCGAGGATATGCATCCAATATTGCGTATGCATTCCCA
ACGGATGCCATTAAATTTGTCGTGTATGAAGCATTGCAAAACCAATTCAC
GCGGAAACTGAACCCTTTGGAGTCGTCCGCTTTGGGCTCTGCGGCGAGCT
CGGTGGCGCAGCTCATGTCTACTCCTTTGGACGTGGTCAGGACGAGAATA
ATGACTGACTGTAAGTCTACAGGGGAGGCAGATGTGCCGACAGCGTCGGT
TTGGAAGACGGCACGCACGATTGCGGCGGAGGAAGGGGTCGGGAAGTTGT
TTAGTGGGCTGGTGCCACGCTTGACGAGGGCTTTTTTGAGTGGAGCGATT
CAGTTTGGGTCCTATGAATTAACGAAAGGTGCATTCAGCAATGCGGGGAA
GAAGTAA
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Synonyms
Publications