jgi.p|Nanoce1779_2|629762, mRNA_4100 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629762
Unique Name	mRNA_4100
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2471
Alignment location	scaffold_8:839927..842397 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	629848
Track	FilteredModels2
ProteinId	629762

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:839927..842397 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629762	gene_4100	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629762	mRNA_4100-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4100	CDS_4100	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:839927..842397+
coding sequence from alignment at scaffold_8:839927..842397+

mRNA sequence

>mRNA_4100 ID=mRNA_4100|Name=jgi.p|Nanoce1779_2|629762|organism=Nannochloropsis oceanica|type=mRNA|length=2471bp
ATGGTCGTAAACTTCGTTCCTATTTGGATAGCCCCCAACCTCATCACTCT
TCTCGGCCTCACCTTCCCTCTGGTCTCCTTGGGCATCTTTGCTTGGCACT
CCCCGCACTTCAAGACGGAGCCTCCCGCCTGGACGTTCTTCTTCAATGCC
TTTGCTTTGTTCGCGTATCAGACATTGGACAACATGGATGGGAAACAAGC
CCGGCGGACAAATAGCAGTAACGCTCTTGGTATGGTATTTGATCACGGGT
GTGACGCTATAAACGCTGGGATTGGCGCGATTAATTTGTTGGTGGTTCTA
GGGATAGTTTCCTCAGGGGAATGGGATGCCTTTTTGGTCTTATCAGCATT
TGCAAGTCCCTTCGTCCCCTTCTACGTGGCGACCTGGGAAGAATATTACA
CCGGTGCCTTGGTCTTGCCAATCATTAATGGCCCGGCGGAGGGCGTCTTG
ATGGGGGTGTTTATTTCCATTCTCTCCGGGTTTCTGGGTTCCGCGTGGTG
GATAAAGGAACATAAATTCCTATTAGCCCTGGAATGGATGCCTCTCAAAA
GACCAGGGGATCTGGTCGGATGTTTCAGCCTGGTTGGTGTGATCGTCACC
TGTATCTCGCAAATCGTCAACGTCATGGTTCTTCAATTCAAAAAAGGCCG
TTCGCTCCTCCATCCCCTGCGAGACCTCCTTCCCTTTGTATTCTTGGCCA
TTGGAACCCACGTATTGGTTGTCACCAAACACGCGTTTCTTACCGAAGCC
CCTTTGCTGACCATGGGCGCTGTTTCCTCTATTTTTGTCGAGCAAGTCGT
GTCCCTTATGCTGGCCCATATGACTCACTCCCCGTACATCCCTTACCACC
GCACCCTCCTCCCTCCATTCCTCGGCTTCGTGGCCATGATGAGCATTGAG
TGGCTCGCACCAGTCAAGGAGGGACTAGATGCTGTTGAAGGGAGGCTTTG
GGGCTTGTGGCAAGGACATTTTGCGATAGTGTTTGGGTATACTGCCTTGT
ATTTGGTGTTGGTAGTGGCGGATTTGAGCAGGGTTTTGGGGGTACGACCG
TTCACGATTGCCGACATAGGAGGGGTAGTAGGTGTAGGAAATGGAAGCAA
GAAGCGGCGTTAGATTGATCGGGAATTGGTGTGAGAGAAGGAAGGGTCAG
GGAGGGAGAGAAGGGGAGGGAGGAAGAGGGAGTAGACTGGAGAGTGCATG
TGTTTTAGAAACGGGAGGTGAGAAGGATGTCCATTTTGAAGATTAGAGCA
GCAACTGTACGGCATGAAGGCGCGACAACAACGACAACAACAGAAACACA
CAACAAAGCGACAGAAGGAAAGCACGTCGGGATAACGCAATCGACAGCCC
CTTGTTCCGAATTGTGCTTGTTTCTTCTGTGCGGGCACATTTGCATCACT
CTTTAAAATTAAAACGAATTTAATTAGCTGCTGGAATTCAACCACAGATT
CCCCTTGGACTGGCTCATACGTCTAAGGAGTGGGGGGGCGGAATGTCTGC
CCGTCGGCGAACTGCTTAAAGAGGAAGGAAGGGAGGGGCGTCCCATCAAC
CAGCTTTTGGGCTGCGGAAATGTCCTCAGCGCCTGCAAGGGAGAGGACTT
TATCGATGGAGTCCAAGACAGTGTCATAGAATTCAAAAGCCTGTGTTCAT
TTGGTGGCGGAAGGGTAAGAATGAATGATAAGTTAACCCGAAGAAGGGCG
GGGGATGGAGAAAAGGAGTACTGCTGTAAGGAAGGGAAACAGATGGGGTG
ATGCTGCTTCATTTTGCGGCCACTTAAAATAGTGTCAGCATGAAAAGAGA
AAACAAAAAATGCAAGCCCCCAAAAAGAATAACAGTATATATTTATCATA
AGGCCTAGAAACGAACCTGTTTCTGATACTTGAGCGCATCAGGACTGATC
TCACCGTCAGTGGGAATAAAGATCTGCGTGTAGACACTCGAATCTAGCTG
GGATAAGGTATTGTCAATCACGGCAGTCACCTCGGCTGCCTCATCAAGTT
TGCTCTGCGAAACGTCCTTCTCAAACGCCAGCAGGACAATCCGCTCCATT
GCCTTCTTCAATCGAAACTGATTTGTCACATACTTGATATTGGTACGTGC
GGGGTCGTACTGGCCAATTTTAATATACTTTGCTACGGGCTGCAGGACCT
TCTTGCTTAGCAGGAGCTTTGAGACACATTCCTCAAAGCTTAGTGCGGCC
GGCTTGTTATCCTTGGCTCGGACCGGGAGAGGAGATGCGCCAGCTACAAA
TAGAAATACCGATGTTAGTACAACACCTTGTTGCAGGGCGGCCTTTCGGT
CGAGCCCTGTGGCTGGGGAGTGCTCTAACTGCTGGTGGGCCGTCATAATC
GTGCTGACTCTGAGGGTCGAAGGGCGGAGGAAAAAGCCGTGCGCCACGGC
GACCATGGCAAGGAGCGAAGTCACAAGAATAAGTGGTGTGCGATGAGGTA
GGGCCATGGTTGGAAACACTG

protein sequence of jgi.p|Nanoce1779_2|629762

>mRNA_4100-protein ID=mRNA_4100-protein|Name=jgi.p|Nanoce1779_2|629762|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MVVNFVPIWIAPNLITLLGLTFPLVSLGIFAWHSPHFKTEPPAWTFFFNA
FALFAYQTLDNMDGKQARRTNSSNALGMVFDHGCDAINAGIGAINLLVVL
GIVSSGEWDAFLVLSAFASPFVPFYVATWEEYYTGALVLPIINGPAEGVL
MGVFISILSGFLGSAWWIKEHKFLLALEWMPLKRPGDLVGCFSLVGVIVT
CISQIVNVMVLQFKKGRSLLHPLRDLLPFVFLAIGTHVLVVTKHAFLTEA
PLLTMGAVSSIFVEQVVSLMLAHMTHSPYIPYHRTLLPPFLGFVAMMSIE
WLAPVKEGLDAVEGRLWGLWQGHFAIVFGYTALYLVLVVADLSRVLGVRP
FTIADIGGVVGVGNGSKKRR*

mRNA from alignment at scaffold_8:839927..842397+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4100 ID=mRNA_4100|Name=jgi.p|Nanoce1779_2|629762|organism=Nannochloropsis oceanica|type=mRNA|length=2471bp|location=Sequence derived from alignment at scaffold_8:839927..842397+ (Nannochloropsis oceanica)
ATGGTCGTAAACTTCGTTCCTATTTGGATAGCCCCCAACCTCATCACTCT
TCTCGGCCTCACCTTCCCTCTGGTCTCCTTGGGCATCTTTGCTTGGCACT
CCCCGCACTTCAAGACGGAGCCTCCCGCCTGGACGTTCTTCTTCAATGCC
TTTGCTTTGTTCGCGTATCAGACATTGGACAACATGGATGGGAAACAAGC
CCGGCGGACAAATAGCAGTAACGCTCTTGGTATGGTATTTGATCACGGGT
GTGACGCTATAAACGCTGGGATTGGCGCGATTAATTTGTTGGTGGTTCTA
GGGATAGTTTCCTCAGGGGAATGGGATGCCTTTTTGGTCTTATCAGCATT
TGCAAGTCCCTTCGTCCCCTTCTACGTGGCGACCTGGGAAGAATATTACA
CCGGTGCCTTGGTCTTGCCAATCATTAATGGCCCGGCGGAGGGCGTCTTG
ATGGGGGTGTTTATTTCCATTCTCTCCGGGTTTCTGGGTTCCGCGTGGTG
GATAAAGGAACATAAATTCCTATTAGCCCTGGAATGGATGCCTCTCAAAA
GACCAGGGGATCTGGTCGGATGTTTCAGCCTGGTTGGTGTGATCGTCACC
TGTATCTCGCAAATCGTCAACGTCATGGTTCTTCAATTCAAAAAAGGCCG
TTCGCTCCTCCATCCCCTGCGAGACCTCCTTCCCTTTGTATTCTTGGCCA
TTGGAACCCACGTATTGGTTGTCACCAAACACGCGTTTCTTACCGAAGCC
CCTTTGCTGACCATGGGCGCTGTTTCCTCTATTTTTGTCGAGCAAGTCGT
GTCCCTTATGCTGGCCCATATGACTCACTCCCCGTACATCCCTTACCACC
GCACCCTCCTCCCTCCATTCCTCGGCTTCGTGGCCATGATGAGCATTGAG
TGGCTCGCACCAGTCAAGGAGGGACTAGATGCTGTTGAAGGGAGGCTTTG
GGGCTTGTGGCAAGGACATTTTGCGATAGTGTTTGGGTATACTGCCTTGT
ATTTGGTGTTGGTAGTGGCGGATTTGAGCAGGGTTTTGGGGGTACGACCG
TTCACGATTGCCGACATAGGAGGGGTAGTAGGTGTAGGAAATGGAAGCAA
GAAGCGGCGTTAGATTGATCGGGAATTGGTGTGAGAGAAGGAAGGGTCAG
GGAGGGAGAGAAGGGGAGGGAGGAAGAGGGAGTAGACTGGAGAGTGCATG
TGTTTTAGAAACGGGAGGTGAGAAGGATGTCCATTTTGAAGATTAGAGCA
GCAACTGTACGGCATGAAGGCGCGACAACAACGACAACAACAGAAACACA
CAACAAAGCGACAGAAGGAAAGCACGTCGGGATAACGCAATCGACAGCCC
CTTGTTCCGAATTGTGCTTGTTTCTTCTGTGCGGGCACATTTGCATCACT
CTTTAAAATTAAAACGAATTTAATTAGCTGCTGGAATTCAACCACAGATT
CCCCTTGGACTGGCTCATACGTCTAAGGAGTGGGGGGGCGGAATGTCTGC
CCGTCGGCGAACTGCTTAAAGAGGAAGGAAGGGAGGGGCGTCCCATCAAC
CAGCTTTTGGGCTGCGGAAATGTCCTCAGCGCCTGCAAGGGAGAGGACTT
TATCGATGGAGTCCAAGACAGTGTCATAGAATTCAAAAGCCTGTGTTCAT
TTGGTGGCGGAAGGGTAAGAATGAATGATAAGTTAACCCGAAGAAGGGCG
GGGGATGGAGAAAAGGAGTACTGCTGTAAGGAAGGGAAACAGATGGGGTG
ATGCTGCTTCATTTTGCGGCCACTTAAAATAGTGTCAGCATGAAAAGAGA
AAACAAAAAATGCAAGCCCCCAAAAAGAATAACAGTATATATTTATCATA
AGGCCTAGAAACGAACCTGTTTCTGATACTTGAGCGCATCAGGACTGATC
TCACCGTCAGTGGGAATAAAGATCTGCGTGTAGACACTCGAATCTAGCTG
GGATAAGGTATTGTCAATCACGGCAGTCACCTCGGCTGCCTCATCAAGTT
TGCTCTGCGAAACGTCCTTCTCAAACGCCAGCAGGACAATCCGCTCCATT
GCCTTCTTCAATCGAAACTGATTTGTCACATACTTGATATTGGTACGTGC
GGGGTCGTACTGGCCAATTTTAATATACTTTGCTACGGGCTGCAGGACCT
TCTTGCTTAGCAGGAGCTTTGAGACACATTCCTCAAAGCTTAGTGCGGCC
GGCTTGTTATCCTTGGCTCGGACCGGGAGAGGAGATGCGCCAGCTACAAA
TAGAAATACCGATGTTAGTACAACACCTTGTTGCAGGGCGGCCTTTCGGT
CGAGCCCTGTGGCTGGGGAGTGCTCTAACTGCTGGTGGGCCGTCATAATC
GTGCTGACTCTGAGGGTCGAAGGGCGGAGGAAAAAGCCGTGCGCCACGGC
GACCATGGCAAGGAGCGAAGTCACAAGAATAAGTGGTGTGCGATGAGGTA
GGGCCATGGTTGGAAACACTG

Coding sequence (CDS) from alignment at scaffold_8:839927..842397+

>mRNA_4100 ID=mRNA_4100|Name=jgi.p|Nanoce1779_2|629762|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at scaffold_8:839927..842397+ (Nannochloropsis oceanica)
ATGGTCGTAAACTTCGTTCCTATTTGGATAGCCCCCAACCTCATCACTCT
TCTCGGCCTCACCTTCCCTCTGGTCTCCTTGGGCATCTTTGCTTGGCACT
CCCCGCACTTCAAGACGGAGCCTCCCGCCTGGACGTTCTTCTTCAATGCC
TTTGCTTTGTTCGCGTATCAGACATTGGACAACATGGATGGGAAACAAGC
CCGGCGGACAAATAGCAGTAACGCTCTTGGTATGGTATTTGATCACGGGT
GTGACGCTATAAACGCTGGGATTGGCGCGATTAATTTGTTGGTGGTTCTA
GGGATAGTTTCCTCAGGGGAATGGGATGCCTTTTTGGTCTTATCAGCATT
TGCAAGTCCCTTCGTCCCCTTCTACGTGGCGACCTGGGAAGAATATTACA
CCGGTGCCTTGGTCTTGCCAATCATTAATGGCCCGGCGGAGGGCGTCTTG
ATGGGGGTGTTTATTTCCATTCTCTCCGGGTTTCTGGGTTCCGCGTGGTG
GATAAAGGAACATAAATTCCTATTAGCCCTGGAATGGATGCCTCTCAAAA
GACCAGGGGATCTGGTCGGATGTTTCAGCCTGGTTGGTGTGATCGTCACC
TGTATCTCGCAAATCGTCAACGTCATGGTTCTTCAATTCAAAAAAGGCCG
TTCGCTCCTCCATCCCCTGCGAGACCTCCTTCCCTTTGTATTCTTGGCCA
TTGGAACCCACGTATTGGTTGTCACCAAACACGCGTTTCTTACCGAAGCC
CCTTTGCTGACCATGGGCGCTGTTTCCTCTATTTTTGTCGAGCAAGTCGT
GTCCCTTATGCTGGCCCATATGACTCACTCCCCGTACATCCCTTACCACC
GCACCCTCCTCCCTCCATTCCTCGGCTTCGTGGCCATGATGAGCATTGAG
TGGCTCGCACCAGTCAAGGAGGGACTAGATGCTGTTGAAGGGAGGCTTTG
GGGCTTGTGGCAAGGACATTTTGCGATAGTGTTTGGGTATACTGCCTTGT
ATTTGGTGTTGGTAGTGGCGGATTTGAGCAGGGTTTTGGGGGTACGACCG
TTCACGATTGCCGACATAGGAGGGGTAGTAGGTGTAGGAAATGGAAGCAA
GAAGCGGCGTTAG

Synonyms

Publications