jgi.p|Nanoce1779_2|228710, mRNA_41 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|228710
Unique Name	mRNA_41
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1520
Alignment location	scaffold_3:116258..118190 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	228796
Track	FilteredModels2
ProteinId	228710

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:116258..118190 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|228710	gene_41	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|228710	mRNA_41-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_41	CDS_41	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:116258..118190+
coding sequence from alignment at scaffold_3:116258..118190+

mRNA sequence

>mRNA_41 ID=mRNA_41|Name=jgi.p|Nanoce1779_2|228710|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp
ACACATAACATTCAAGCAGGGGCACTGAATTGCGACGCGTCAACGACGAC
GATAAGAAGAAGGGAAAGCTAGAGGAGGAGCACGATTCGCTTGTGGAGGT
AATGTCGGCAGAAGCAGAACAAAATGGCATACCTTGGCCTCGACAAAAAC
CCAAGCCTCTGCCGCGCTCCCGAACGTCCCAACGACGCGAACGGAACAAA
GCGTGCGCTACCTACCTGGCATCAAATCTCGTCGTCACGGTGCTATTGGC
CCTGGTTCCGGACCGCACCTATTTACATGAACGAAAAGATTTGTGGGGCT
TTTTTGCCGTATCGGTCGGGACGACAGTCATTTTGTTTTTGGTGTTACAG
GCGAGTAGTCCGGGATACGTGGCTCGAGAGGAGGCATCGGAAGGGAGGGA
GGATGAGGACGGGAGATTGCGTTTGTTGGAGGGAGGAGAGATTGAAATGT
GGGAAGTTGGTCAGGAGAAGGGTAATAAAGAGGAGGAAGGAGATGATCAA
GTGTTGTTGCGGGGGCCTCGGTATTGGAGGCAGCGCAAACATAGACCCCT
GCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGG
AGAGGGAGGAGGAGGAGGGGGAGGAGGAAGAGGAGAAGGAGGAGAAGGAG
GGAGAGGAGCAGCAACAGGGAGAGCTCCAGCAGCTGCAGCAGCAGCAGCA
CCAAGGTGCAGTACCAACAGCTGATTCAAGTTATAGCGCCGATTGGAACC
ATCCCGATTTGAGGAGAGGTAGGAGGAGAGCAGGGCGGATGTCGACCACT
CCAGACGGCTGGTGCAAGCAGTGTGGGATGAAGAAGCCTTTGCGTGCTCA
CCACTGCACGCACTGCAACCGCTGTGTCCATACTTTCGACCACCACTGCC
ACTTCCTCGCTACGTGCGTGGGAGAGCGGAACCATTGCCGTTTCCTTCTC
TTCCTCATGGCGCAGAACACGGCGTGTTACTCGGCTTTGCAAGTCGTCGG
GACGGGCTTCGCACGCAGAGGAAGCCCTGACTTGGTCGACTACGTCCTTG
CCAACCTCCTCCCCCTCTCCCTCTCCCTCCTCCTCTGGTGCTTGTACGGC
ATAGCCTTCCTCCTTCTCGTCCTTCACATCTTCCTTGCTGTCTCCTCCCT
CACGTCCTACGAATTTACCAAAGGGCCTGAGAGAATTGTGTATCTACGAA
GACATGGAGGAGAGGAGGAGGGAGGAGGAGGAGGAAGGGGAGAGGGAGGG
GACGGTGATGTATTTGACCTTCCATTCAGTGAGGGCTTGTGCATGAATGT
TGTGTCCTTCTGTTGTGTGAGGGATGGGATATGGTCGAGCTTGATGGGGA
AGGAGTGGCGGCCTGCGGTGTGGGCGAAAAAAGAGGAGGAAGAGGAGTGG
GGGGGGGAAAGGTCTAGGGACGTGTGTCGCTATCCGTATCGGAACGTATA
TTGGTCGTGTTGTTGAGGGTGAGGGGGGGGCAGGAGTGGGAAAGGAGCAG
GTAAAGAAAACAAGTCAAAG

protein sequence of jgi.p|Nanoce1779_2|228710

>mRNA_41-protein ID=mRNA_41-protein|Name=jgi.p|Nanoce1779_2|228710|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MSAEAEQNGIPWPRQKPKPLPRSRTSQRRERNKACATYLASNLVVTVLLA
LVPDRTYLHERKDLWGFFAVSVGTTVILFLVLQASSPGYVAREEASEGRE
DEDGRLRLLEGGEIEMWEVGQEKGNKEEEGDDQVLLRGPRYWRQRKHRPL
QQQQQQQQQQQQQQEEEREEEEGEEEEEKEEKEGEEQQQGELQQLQQQQH
QGAVPTADSSYSADWNHPDLRRGRRRAGRMSTTPDGWCKQCGMKKPLRAH
HCTHCNRCVHTFDHHCHFLATCVGERNHCRFLLFLMAQNTACYSALQVVG
TGFARRGSPDLVDYVLANLLPLSLSLLLWCLYGIAFLLLVLHIFLAVSSL
TSYEFTKGPERIVYLRRHGGEEEGGGGGRGEGGDGDVFDLPFSEGLCMNV
VSFCCVRDGIWSSLMGKEWRPAVWAKKEEEEEWGGERSRDVCRYPYRNVY
WSCC*

mRNA from alignment at scaffold_3:116258..118190+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_41 ID=mRNA_41|Name=jgi.p|Nanoce1779_2|228710|organism=Nannochloropsis oceanica|type=mRNA|length=1933bp|location=Sequence derived from alignment at scaffold_3:116258..118190+ (Nannochloropsis oceanica)
ACACATAACATTCAAGCAGGGGCACTGAATTGCGACGCGTCAACGACGAC
GATAAGAAGAAGGGAAAGCTAGAGGAGGAGCACGATTCGCTTGTGGAGGT
AATGTCGGCAGAAGCAGAACAAAATGGCATACCTTGGCCTCGACAAAAAC
CCAAGCCTCTGCCGCGCTCCCGAACGTCCCAACGACGCGAAGTAAGTAAA
TTGAGATTAGGCAAAGGAAAGATGCGGTCTTATTATTATTTTTAATCTTT
ATAAAGAGGCAGTGCCAAAGAAGCCGTTCACCGACCCACCCTCACACCCT
CCATCCCTCCCCATTGCCACACAAAAGCGGAACAAAGCGTGCGCTACCTA
CCTGGCATCAAATCTCGTCGTCACGGTGCTATTGGCCCTGGTTCCGGACC
GCACCTATTTACATGAACGAAAAGATTTGTGGGGCTTTTTTGCCGTATCG
GTCGGGACGACAGTCATTTTGTTTTTGGTGTTACAGGCGAGTAGTCCGGG
ATACGTGGCTCGAGAGGAGGCATCGGAAGGGAGGGAGGATGAGGACGGGA
GATTGCGTTTGTTGGAGGGAGGAGAGATTGAAATGTGGGAAGTTGGTCAG
GAGAAGGGTAATAAAGAGGAGGAAGGAGATGATCAAGTGTTGTTGCGGGG
GCCTCGGTATTGGAGGCAGCGCAAACATAGACCCCTGCAGCAGCAGCAGC
AACAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGAGGGAGGAGGAG
GAGGGGGAGGAGGAAGAGGAGAAGGAGGAGAAGGAGGGAGAGGAGCAGCA
ACAGGGAGAGCTCCAGCAGCTGCAGCAGCAGCAGCACCAAGGTGCAGTAC
CAACAGCTGATTCAAGTTATAGCGCCGATTGGAACCATCCCGATTTGAGG
AGAGGTAGGAGGAGAGCAGGGCGGATGTCGACCACTCCAGACGGCTGGTG
CAAGCAGTGTGGGATGAAGAAGGTAGTTGATGAATGTGGAAAGGAGGGAG
CGAGGGTTGAGGGTACAACAACACACAACAACAAGAGGAATGCTACTTCT
GTTATTATTTACTTCATACCTCCCTCTGTCTCTCCTCTTCCTCATCTATA
CCAGCCTTTGCGTGCTCACCACTGCACGCACTGCAACCGCTGTGTCCATA
CTTTCGACCACCACTGCCACTTCCTCGCTACGTGCGTGGGAGAGCGGAAC
CATTGCCGTTTCCTTCTCTTCCTCATGGCGCAGAACACGGCGTGTTACTC
GGCTTTGCAAGTCGTCGGGACGGGCTTCGCACGCAGGTACAGGGAGAGGG
CGGGCGGGCGGGCGGGCGGGCGGGAGGGAGGGAGGGAGGGAAACGTTGGG
AACCTCCCTTAATGGACGCGATGGGAGCCGATTCATCTCATTTCTCCCCT
CTCTCTCTTTCCCCCCTTCCTCCCCTCCTAGAGGAAGCCCTGACTTGGTC
GACTACGTCCTTGCCAACCTCCTCCCCCTCTCCCTCTCCCTCCTCCTCTG
GTGCTTGTACGGCATAGCCTTCCTCCTTCTCGTCCTTCACATCTTCCTTG
CTGTCTCCTCCCTCACGTCCTACGAATTTACCAAAGGGCCTGAGAGAATT
GTGTATCTACGAAGACATGGAGGAGAGGAGGAGGGAGGAGGAGGAGGAAG
GGGAGAGGGAGGGGACGGTGATGTATTTGACCTTCCATTCAGTGAGGGCT
TGTGCATGAATGTTGTGTCCTTCTGTTGTGTGAGGGATGGGATATGGTCG
AGCTTGATGGGGAAGGAGTGGCGGCCTGCGGTGTGGGCGAAAAAAGAGGA
GGAAGAGGAGTGGGGGGGGGAAAGGTCTAGGGACGTGTGTCGCTATCCGT
ATCGGAACGTATATTGGTCGTGTTGTTGAGGGTGAGGGGGGGGCAGGAGT
GGGAAAGGAGCAGGTAAAGAAAACAAGTCAAAG

Coding sequence (CDS) from alignment at scaffold_3:116258..118190+

>mRNA_41 ID=mRNA_41|Name=jgi.p|Nanoce1779_2|228710|organism=Nannochloropsis oceanica|type=CDS|length=5460bp|location=Sequence derived from alignment at scaffold_3:116258..118190+ (Nannochloropsis oceanica)
ATGTCGGCAGAAGCAGAACAAAATGGCATACCTTGGCCTCGACAAAAACC
CAAGCCTCTGCCGCGCTCCCGAACGTCCCAACGACGCGAACGGAACAAAG
CGTGCGCTACCTACCTGGCATCAAATCTCGTCGTCACGGTGCTATTGGCC
CTGGTTCCGGACCGCACCTATTTACATGAACGAAAAGATTTGTGGGGCTT
TTTTGCCGTATCGGTCGGGACGACAGTCATTTTGTTTTTGGTGTTACAGG
CGAGTAGTCCGGGATACGTGGCTCGAGAGGAGGCATCGGAAGGGAGGGAG
GATGAGGACGGGAGATTGCGTTTGTTGGAGGGAGGAGAGATTGAAATGTG
GGAAGTTGGTCAGGAGAAGGGTAATAAAGAGGAGGAAGGAGATGATCAAG
TGTTGTTGCGGGGGCCTCGGTATTGGAGGCAGCGCAAACATAGACCCCTG
CAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGA
GAGGGAGGAGGAGGAGGGGGAGGAGGAAGAGGAGAAGGAGGAGAAGGAGG
GAGAGGAGCAGCAACAGGGAGAGCTCCAGCAGCTGCAGCAGCAGCAGCAC
CAAGGTGCAGTACCAACAGCTGATTCAAGTTATAGCGCCGATTGGAACCA
TCCCGATTTGAGGAGAGGTAGGAGGAGAGCAGGGCGGATGTCGACCACTC
CAGACGGCTGGTGCAAGCAGTGTGGGATGAAGAAGCCTTTGCGTGCTCAC
CACTGCACGCACTGCAACCGCTGTGTCCATACTTTCGACCACCACTGCCA
CTTCCTCGCTACGTGCGTGGGAGAGCGGAACCATTGCCGTTTCCTTCTCT
TCCTCATGGCGCAGAACACGGCGTGTTACTCGGCTTTGCAAGTCGTCGGG
ACGGGCTTCGCACGCAGAGGAAGCCCTGACTTGGTCGACTACGTCCTTGC
CAACCTCCTCCCCCTCTCCCTCTCCCTCCTCCTCTGGTGCTTGTACGGCA
TAGCCTTCCTCCTTCTCGTCCTTCACATCTTCCTTGCTGTCTCCTCCCTC
ACGTCCTACGAATTTACCAAAGGGCCTGAGAGAATTGTGTATCTACGAAG
ACATGGAGGAGAGGAGGAGGGAGGAGGAGGAGGAAGGGGAGAGGGAGGGG
ACGGTGATGTATTTGACCTTCCATTCAGTGAGGGCTTGTGCATGAATGTT
GTGTCCTTCTGTTGTGTGAGGGATGGGATATGGTCGAGCTTGATGGGGAA
GGAGTGGCGGCCTGCGGTGTGGGCGAAAAAAGAGGAGGAAGAGGAGTGGG
GGGGGGAAAGGTCTAGGGACGTGTGTCGCTATCCGTATCGGAACGTATAT
TGGTCGTGTTGTTGAATGTCGGCAGAAGCAGAACAAAATGGCATACCTTG
GCCTCGACAAAAACCCAAGCCTCTGCCGCGCTCCCGAACGTCCCAACGAC
GCGAACGGAACAAAGCGTGCGCTACCTACCTGGCATCAAATCTCGTCGTC
ACGGTGCTATTGGCCCTGGTTCCGGACCGCACCTATTTACATGAACGAAA
AGATTTGTGGGGCTTTTTTGCCGTATCGGTCGGGACGACAGTCATTTTGT
TTTTGGTGTTACAGGCGAGTAGTCCGGGATACGTGGCTCGAGAGGAGGCA
TCGGAAGGGAGGGAGGATGAGGACGGGAGATTGCGTTTGTTGGAGGGAGG
AGAGATTGAAATGTGGGAAGTTGGTCAGGAGAAGGGTAATAAAGAGGAGG
AAGGAGATGATCAAGTGTTGTTGCGGGGGCCTCGGTATTGGAGGCAGCGC
AAACATAGACCCCTGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCA
GCAGCAGGAGGAGGAGAGGGAGGAGGAGGAGGGGGAGGAGGAAGAGGAGA
AGGAGGAGAAGGAGGGAGAGGAGCAGCAACAGGGAGAGCTCCAGCAGCTG
CAGCAGCAGCAGCACCAAGGTGCAGTACCAACAGCTGATTCAAGTTATAG
CGCCGATTGGAACCATCCCGATTTGAGGAGAGGTAGGAGGAGAGCAGGGC
GGATGTCGACCACTCCAGACGGCTGGTGCAAGCAGTGTGGGATGAAGAAG
CCTTTGCGTGCTCACCACTGCACGCACTGCAACCGCTGTGTCCATACTTT
CGACCACCACTGCCACTTCCTCGCTACGTGCGTGGGAGAGCGGAACCATT
GCCGTTTCCTTCTCTTCCTCATGGCGCAGAACACGGCGTGTTACTCGGCT
TTGCAAGTCGTCGGGACGGGCTTCGCACGCAGAGGAAGCCCTGACTTGGT
CGACTACGTCCTTGCCAACCTCCTCCCCCTCTCCCTCTCCCTCCTCCTCT
GGTGCTTGTACGGCATAGCCTTCCTCCTTCTCGTCCTTCACATCTTCCTT
GCTGTCTCCTCCCTCACGTCCTACGAATTTACCAAAGGGCCTGAGAGAAT
TGTGTATCTACGAAGACATGGAGGAGAGGAGGAGGGAGGAGGAGGAGGAA
GGGGAGAGGGAGGGGACGGTGATGTATTTGACCTTCCATTCAGTGAGGGC
TTGTGCATGAATGTTGTGTCCTTCTGTTGTGTGAGGGATGGGATATGGTC
GAGCTTGATGGGGAAGGAGTGGCGGCCTGCGGTGTGGGCGAAAAAAGAGG
AGGAAGAGGAGTGGGGGGGGGAAAGGTCTAGGGACGTGTGTCGCTATCCG
TATCGGAACGTATATTGGTCGTGTTGTTGAATGTCGGCAGAAGCAGAACA
AAATGGCATACCTTGGCCTCGACAAAAACCCAAGCCTCTGCCGCGCTCCC
GAACGTCCCAACGACGCGAACGGAACAAAGCGTGCGCTACCTACCTGGCA
TCAAATCTCGTCGTCACGGTGCTATTGGCCCTGGTTCCGGACCGCACCTA
TTTACATGAACGAAAAGATTTGTGGGGCTTTTTTGCCGTATCGGTCGGGA
CGACAGTCATTTTGTTTTTGGTGTTACAGGCGAGTAGTCCGGGATACGTG
GCTCGAGAGGAGGCATCGGAAGGGAGGGAGGATGAGGACGGGAGATTGCG
TTTGTTGGAGGGAGGAGAGATTGAAATGTGGGAAGTTGGTCAGGAGAAGG
GTAATAAAGAGGAGGAAGGAGATGATCAAGTGTTGTTGCGGGGGCCTCGG
TATTGGAGGCAGCGCAAACATAGACCCCTGCAGCAGCAGCAGCAACAGCA
GCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGAGGGAGGAGGAGGAGGGGG
AGGAGGAAGAGGAGAAGGAGGAGAAGGAGGGAGAGGAGCAGCAACAGGGA
GAGCTCCAGCAGCTGCAGCAGCAGCAGCACCAAGGTGCAGTACCAACAGC
TGATTCAAGTTATAGCGCCGATTGGAACCATCCCGATTTGAGGAGAGGTA
GGAGGAGAGCAGGGCGGATGTCGACCACTCCAGACGGCTGGTGCAAGCAG
TGTGGGATGAAGAAGCCTTTGCGTGCTCACCACTGCACGCACTGCAACCG
CTGTGTCCATACTTTCGACCACCACTGCCACTTCCTCGCTACGTGCGTGG
GAGAGCGGAACCATTGCCGTTTCCTTCTCTTCCTCATGGCGCAGAACACG
GCGTGTTACTCGGCTTTGCAAGTCGTCGGGACGGGCTTCGCACGCAGAGG
AAGCCCTGACTTGGTCGACTACGTCCTTGCCAACCTCCTCCCCCTCTCCC
TCTCCCTCCTCCTCTGGTGCTTGTACGGCATAGCCTTCCTCCTTCTCGTC
CTTCACATCTTCCTTGCTGTCTCCTCCCTCACGTCCTACGAATTTACCAA
AGGGCCTGAGAGAATTGTGTATCTACGAAGACATGGAGGAGAGGAGGAGG
GAGGAGGAGGAGGAAGGGGAGAGGGAGGGGACGGTGATGTATTTGACCTT
CCATTCAGTGAGGGCTTGTGCATGAATGTTGTGTCCTTCTGTTGTGTGAG
GGATGGGATATGGTCGAGCTTGATGGGGAAGGAGTGGCGGCCTGCGGTGT
GGGCGAAAAAAGAGGAGGAAGAGGAGTGGGGGGGGGAAAGGTCTAGGGAC
GTGTGTCGCTATCCGTATCGGAACGTATATTGGTCGTGTTGTTGAATGTC
GGCAGAAGCAGAACAAAATGGCATACCTTGGCCTCGACAAAAACCCAAGC
CTCTGCCGCGCTCCCGAACGTCCCAACGACGCGAACGGAACAAAGCGTGC
GCTACCTACCTGGCATCAAATCTCGTCGTCACGGTGCTATTGGCCCTGGT
TCCGGACCGCACCTATTTACATGAACGAAAAGATTTGTGGGGCTTTTTTG
CCGTATCGGTCGGGACGACAGTCATTTTGTTTTTGGTGTTACAGGCGAGT
AGTCCGGGATACGTGGCTCGAGAGGAGGCATCGGAAGGGAGGGAGGATGA
GGACGGGAGATTGCGTTTGTTGGAGGGAGGAGAGATTGAAATGTGGGAAG
TTGGTCAGGAGAAGGGTAATAAAGAGGAGGAAGGAGATGATCAAGTGTTG
TTGCGGGGGCCTCGGTATTGGAGGCAGCGCAAACATAGACCCCTGCAGCA
GCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGAGGG
AGGAGGAGGAGGGGGAGGAGGAAGAGGAGAAGGAGGAGAAGGAGGGAGAG
GAGCAGCAACAGGGAGAGCTCCAGCAGCTGCAGCAGCAGCAGCACCAAGG
TGCAGTACCAACAGCTGATTCAAGTTATAGCGCCGATTGGAACCATCCCG
ATTTGAGGAGAGGTAGGAGGAGAGCAGGGCGGATGTCGACCACTCCAGAC
GGCTGGTGCAAGCAGTGTGGGATGAAGAAGCCTTTGCGTGCTCACCACTG
CACGCACTGCAACCGCTGTGTCCATACTTTCGACCACCACTGCCACTTCC
TCGCTACGTGCGTGGGAGAGCGGAACCATTGCCGTTTCCTTCTCTTCCTC
ATGGCGCAGAACACGGCGTGTTACTCGGCTTTGCAAGTCGTCGGGACGGG
CTTCGCACGCAGAGGAAGCCCTGACTTGGTCGACTACGTCCTTGCCAACC
TCCTCCCCCTCTCCCTCTCCCTCCTCCTCTGGTGCTTGTACGGCATAGCC
TTCCTCCTTCTCGTCCTTCACATCTTCCTTGCTGTCTCCTCCCTCACGTC
CTACGAATTTACCAAAGGGCCTGAGAGAATTGTGTATCTACGAAGACATG
GAGGAGAGGAGGAGGGAGGAGGAGGAGGAAGGGGAGAGGGAGGGGACGGT
GATGTATTTGACCTTCCATTCAGTGAGGGCTTGTGCATGAATGTTGTGTC
CTTCTGTTGTGTGAGGGATGGGATATGGTCGAGCTTGATGGGGAAGGAGT
GGCGGCCTGCGGTGTGGGCGAAAAAAGAGGAGGAAGAGGAGTGGGGGGGG
GAAAGGTCTAGGGACGTGTGTCGCTATCCGTATCGGAACGTATATTGGTC
GTGTTGTTGA

Synonyms

Publications