jgi.p|Nanoce1779_2|623077, mRNA_4099 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|623077
Unique NamemRNA_4099
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length771
Alignment locationscaffold_8:837977..839839 +

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Properties
Property NameValue
TranscriptId623163
TrackFilteredModels2
ProteinId623077
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:837977..839839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623077gene_4099Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623077mRNA_4099-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4099CDS_4099Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4099 ID=mRNA_4099|Name=jgi.p|Nanoce1779_2|623077|organism=Nannochloropsis oceanica|type=mRNA|length=771bp
ATGCATGCGTCCTCGGTGGCATCTCGCCCCTTGTCCTCCTCTGCCTCCAC
ATCCGCCCCGACGAGCTACAGCAGCAGCGCAAACCCTTTAGAAGGCCTGC
GGATCACCCTCTATCAATACAAAATATGCCCCTTCTGCTGCAAAGTCAAG
GCTGTCCTGGACTACTACAAAATCCCCTACGAGACCATGGATGTCAATCC
TCTTACCAAAGCCGAAATAAAGTTCTCCGCTGACTACCGCAAGGTACCAA
TTGCCCGGATAGGGGATGAGGTGGTCATTGATTCCTCCATCATCGTCGGC
AAGATTATGGATTTGCTCCGCGCGGCCCACGTGGCCCCTGCGAAAGAATT
GGACGCGTTTTTCGCACCTGAGGCGACGCGATGGGCCGAATGGGCGGATA
TGGAGTTAGCAGTATTGTTGTTTCCTAATATAACCCGGACATTTGGAGAA
TCATACCAGGCGTTTAGTTACGTGAAGGATGTGCCTCATTTTTCGATGCT
TGATAAACTAACTAATCAATGGATAGGTGCCACGGCTATGTGGGCAGCAC
AGGGGAAGATAAAGAAAAAGTACAACATCACGGATGAACGCGCTGCGCTG
TTTGCGGCGTTGGAGACCTGGAGTAGCGAGGTGGGGAACAAGCCGTTTTT
GAGCGGGAGTACTCCCAATGTGGGGGATTTGTGTGTGTATGCTTGCATTC
GAGCTATTGAGGGGTTGGATGCCCATAAGGATTTGCTGGCGAACACGGGG
ATAGGACCCTGTCCTAGATGA
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protein sequence of jgi.p|Nanoce1779_2|623077

>mRNA_4099-protein ID=mRNA_4099-protein|Name=jgi.p|Nanoce1779_2|623077|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MHASSVASRPLSSSASTSAPTSYSSSANPLEGLRITLYQYKICPFCCKVK
AVLDYYKIPYETMDVNPLTKAEIKFSADYRKVPIARIGDEVVIDSSIIVG
KIMDLLRAAHVAPAKELDAFFAPEATRWAEWADMELAVLLFPNITRTFGE
SYQAFSYVKDVPHFSMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAAL
FAALETWSSEVGNKPFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTG
IGPCPR*
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mRNA from alignment at scaffold_8:837977..839839+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4099 ID=mRNA_4099|Name=jgi.p|Nanoce1779_2|623077|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp|location=Sequence derived from alignment at scaffold_8:837977..839839+ (Nannochloropsis oceanica)
ATGCATGCGTCCTCGGTGGCATCTCGCCCCTTGTCCTCCTCTGCCTCCAC
ATCCGCCCCGACGAGCTACAGCAGCAGCGCAAACCCTTTAGAAGGCCTGC
GGATCACCCTCTATCAATACAAAATATGCCCCTTCTGCTGCAAAGTCAAG
GCTGTCCTGGACTACTACAAAATCCCCTACGAGACCATGGATGTCAATCC
TCTTACCAAAGCCGAAATAAAGTTCTCCGCTGACTACCGCAAGGTACCAA
TTGCCCGGATAGGGGATGAGGTGGTCATTGATTCCTCCATCATCGTCGGC
AAGATTATGGATTTGCTCCGCGCGGCCCACGTGGCCCCTGCGAAAGAATT
GGACGCGTTTTTCGCACCTGAGGCGACGCGATGGGCCGAATGGGCGGATA
TGGAGTTAGCAGTATTGTTGTTTCCTAATATAACCCGGACATTTGGAGAA
TCATACCAGGCGTTTAGTTACGTGAAGGATGTGCCTCATTTTTCGATGCT
TGATAAACTAACTAATCAATGGATAGGTGCCACGGCTATGTGGGCAGCAC
AGGGGAAGATAAAGAAAAAGTACAACATCACGGATGAACGCGCTGCGCTG
TTTGCGGCGTTGGAGACCTGGAGTAGCGAGGTGGGGAACAAGCCGTTTTT
GAGCGGGAGTACTCCCAATGTGGGGGATTTGTGTGTGTATGCTTGCATTC
GAGCTATTGAGGGGTTGGATGCCCATAAGGATTTGCTGGCGAACACGGGG
ATAGGACCCTGGTATACACGGGTGGAGCATGCGATAGGGGCGTCGTCGTG
TGTGCATGCGGAGTAAGATTGATAAAAGGACTGGGCGAGGTAGGCTGATG
GGATTGGAAGAAAATGGCAGGGAAAGAAAAAAAAGAATGGGATGATTTTG
CAAGAGAGATCTTGGCCGGGGGCGTCATGCTACCGGAGGAATGGATTTCG
TTCGGTTTCGCAAGGTGACACCAGGTGCTGGTGGTGCCGGTGATGACACT
TCTTTATAATTCTAATTGTATTTTAAGATGGAGAGTCGGATTTCTAAGCA
ATATTATCATGAGTTTATTCTTTCTCATGACTCGAAAGCACTCGACTTGT
TACGGAAGCGGATACGCATAGCCCGTGCTCGCGGAGGCACAGGTCGCGGT
AGGTATTGGGAGCAAGGCATGAGGTTTAATAAAATATTCATCGAATGTTG
CAAATAACGAGATCCAGGAAAAGAAAGAGCTTTTGAGGAACCTTATATAC
GCAATTAGACCTATTTTTAGGAATTGGTAAAATGGTAAAGAAGGCAGATG
GGCCGGCAAGCAACCGCTCTTTGAGCATTTGACTTTCATCCTCAGCCATG
CAAAGACCACCACCACAGACCGCAAAGACCACAGATGAAACTTCGGACGT
CGCATTGAGATGCCTGCTTTGCTTTTTGTCTTCTCCGTACGGCTGACGTT
GATTATATCCACACATCCGCTTGTATGTCCTCATTCCTTTGCCGCTCCTC
CGTCATGCCCCTATCATGCATCTCCTCTCATTCATGCCCCGTACCACACG
ACACAGGGCAAATCATGCGCAGCAAGTGTTGGGGACTGTTTGACAACGAA
GGTGCCGATGCCCTCCGCAACTACAAATACGTGGGGGTGGACAACTCTTT
GGCTTACAAGTAAGTCTTGGTTGGTCGATAGAGGAGGAGGATGGAAGGAG
AGGGGGAGGGTCGGGAGTAGAGCATCGCACAGGTCAACCAGAAATTTGCT
TGGATTACAAAACGCGGCTGCTATCTTTCTCATCAACATCGGTTTACCAT
GCATGACACCACCCTCTTTTTACTTTTGTATGCCGTCACGCTCGGGCCCC
CAGTCCTAGATGA
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Coding sequence (CDS) from alignment at scaffold_8:837977..839839+

>mRNA_4099 ID=mRNA_4099|Name=jgi.p|Nanoce1779_2|623077|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at scaffold_8:837977..839839+ (Nannochloropsis oceanica)
ATGCATGCGTCCTCGGTGGCATCTCGCCCCTTGTCCTCCTCTGCCTCCAC
ATCCGCCCCGACGAGCTACAGCAGCAGCGCAAACCCTTTAGAAGGCCTGC
GGATCACCCTCTATCAATACAAAATATGCCCCTTCTGCTGCAAAGTCAAG
GCTGTCCTGGACTACTACAAAATCCCCTACGAGACCATGGATGTCAATCC
TCTTACCAAAGCCGAAATAAAGTTCTCCGCTGACTACCGCAAGGTACCAA
TTGCCCGGATAGGGGATGAGGTGGTCATTGATTCCTCCATCATCGTCGGC
AAGATTATGGATTTGCTCCGCGCGGCCCACGTGGCCCCTGCGAAAGAATT
GGACGCGTTTTTCGCACCTGAGGCGACGCGATGGGCCGAATGGGCGGATA
TGGAGTTAGCAGTATTGTTGTTTCCTAATATAACCCGGACATTTGGAGAA
TCATACCAGGCGTTTAGTTACGTGAAGGATGTGCCTCATTTTTCGATGCT
TGATAAACTAACTAATCAATGGATAGGTGCCACGGCTATGTGGGCAGCAC
AGGGGAAGATAAAGAAAAAGTACAACATCACGGATGAACGCGCTGCGCTG
TTTGCGGCGTTGGAGACCTGGAGTAGCGAGGTGGGGAACAAGCCGTTTTT
GAGCGGGAGTACTCCCAATGTGGGGGATTTGTGTGTGTATGCTTGCATTC
GAGCTATTGAGGGGTTGGATGCCCATAAGGATTTGCTGGCGAACACGGGG
ATAGGACCCTGTCCTAGATGAATGCATGCGTCCTCGGTGGCATCTCGCCC
CTTGTCCTCCTCTGCCTCCACATCCGCCCCGACGAGCTACAGCAGCAGCG
CAAACCCTTTAGAAGGCCTGCGGATCACCCTCTATCAATACAAAATATGC
CCCTTCTGCTGCAAAGTCAAGGCTGTCCTGGACTACTACAAAATCCCCTA
CGAGACCATGGATGTCAATCCTCTTACCAAAGCCGAAATAAAGTTCTCCG
CTGACTACCGCAAGGTACCAATTGCCCGGATAGGGGATGAGGTGGTCATT
GATTCCTCCATCATCGTCGGCAAGATTATGGATTTGCTCCGCGCGGCCCA
CGTGGCCCCTGCGAAAGAATTGGACGCGTTTTTCGCACCTGAGGCGACGC
GATGGGCCGAATGGGCGGATATGGAGTTAGCAGTATTGTTGTTTCCTAAT
ATAACCCGGACATTTGGAGAATCATACCAGGCGTTTAGTTACGTGAAGGA
TGTGCCTCATTTTTCGATGCTTGATAAACTAACTAATCAATGGATAGGTG
CCACGGCTATGTGGGCAGCACAGGGGAAGATAAAGAAAAAGTACAACATC
ACGGATGAACGCGCTGCGCTGTTTGCGGCGTTGGAGACCTGGAGTAGCGA
GGTGGGGAACAAGCCGTTTTTGAGCGGGAGTACTCCCAATGTGGGGGATT
TGTGTGTGTATGCTTGCATTCGAGCTATTGAGGGGTTGGATGCCCATAAG
GATTTGCTGGCGAACACGGGGATAGGACCCTGTCCTAGATGA
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Synonyms
Publications