jgi.p|Nanoce1779_2|586531, mRNA_4096 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586531
Unique NamemRNA_4096
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1391
Alignment locationscaffold_8:826728..828566 -

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Properties
Property NameValue
TranscriptId586617
TrackFilteredModels2
ProteinId586531
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:826728..828566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586531gene_4096Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586531mRNA_4096-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4096CDS_4096Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4096 ID=mRNA_4096|Name=jgi.p|Nanoce1779_2|586531|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp
GTACCGGAGGAAGGGAGGAGGTAAAGAGGAACTTGATGAAAAGGGTGGAG
GACACCTCGGCTCTGGTCGGTCTAAATTGGCGCGACAAGAACTACATGGG
CGTGGTGTACACCACGAACGACGATGGTAAGTGCGACCCTTTGGAAGTGA
AGCACATCTTCTGTTTCCCTTACGGTTGCACGGTTTTCTGGGGCTGCACC
AAGGAGGAGGAAGAGCTCTTCATATCCATGCTTCTCCCGTTCGCCGTCGA
GCCCGTCTCAGTCATGGAGCGGGAGGAGAGCCACGATGATTTTGTGTACC
TTTACGGGGACTCTCCCATGATCCTTCACTATGAAATCACCCTCTCGAGC
AACGACCCGGAGGAGAAGTTGGCGTTGAGTTTCTCCCTGGCCCAGAGCGC
GAAGCTGTTCGTGTTCGAAGACCGCGTCGACGGGACCATCACCAGCACCA
AGCACATCCCGATCCACCTGGCGGAGTTCGGGAAGATCAACGTGAGCCGG
CGGGAGATATCCAAATTGACGGGGAAGGTCTTCTTGGAGCGGAATGAAGT
CAACCTCCACTCGGACATCCTTGACACCCCCGAATGGTTTTGGGAGGCGG
ATCTGTGGGAGCCGCGGTATGTGGCTTTCTGCAAGTATCTGGATTTGCCG
AACCGGATAAACATTTTGAATAAACGGTTGGACATCCTGAGAGAGTTGCT
TAATGTGCTCGAGACGCAACTGGATAACTCCCACTCCACGAAGCTGGAAT
TGATTGTCATCGCCCTCATTATCGTGGAGGTGGTGTTGCAGGTGCTTGAG
ATCGCCTTGAATGACCTCTTGCACCTGGACAGGTATCAGTACTAAGGAGG
CAGGGAAGGAGGGAGAGAGGGAGGTGGAAATACGCATATCTGCTTGTTGT
TTTGCATGTGCTTGGTTTTTTGTATGGTAGAGGTACATTAGAGGTTTCTA
TTATTAAGACGTAACGTGCCCAAGTGTGTGGTGTCTTGACTTTCTTTTGG
TGTGCAGGTCTAGGTGGTGTATGCTTGAACGCAAAAAGGGCAACGCGCAC
AGCAGCGAGCACGGACAAAGAGCGAAGGAAAATCGCAGACGGGAAAGAGC
GCGAGGACGATAAAAGAACGAAGGCAAGCGAGGAAAGAACCAAATATACA
CCACCACGTGAACAAATGTGTAAGCGTGTTATTAAAGTTAGACCCCGTCG
GATCTAAGAACTTTTACAACATGGAACTGTGTTAGGGGAGATCGATGTAA
GCAGTGAAGTGCTGATCATGGTCAACCCCGTTAACTGCTGGGGGGGATGT
GCTTGTTGCTAAAATGCTGCAAAACTGCAATACAACAGGCGCCAGGGGGA
GAGAACGAGTAAAGGCATCGTCCAAGCATACAAGAAGTAAA
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protein sequence of jgi.p|Nanoce1779_2|586531

>mRNA_4096-protein ID=mRNA_4096-protein|Name=jgi.p|Nanoce1779_2|586531|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MKRVEDTSALVGLNWRDKNYMGVVYTTNDDGKCDPLEVKHIFCFPYGCTV
FWGCTKEEEELFISMLLPFAVEPVSVMEREESHDDFVYLYGDSPMILHYE
ITLSSNDPEEKLALSFSLAQSAKLFVFEDRVDGTITSTKHIPIHLAEFGK
INVSRREISKLTGKVFLERNEVNLHSDILDTPEWFWEADLWEPRYVAFCK
YLDLPNRINILNKRLDILRELLNVLETQLDNSHSTKLELIVIALIIVEVV
LQVLEIALNDLLHLDRYQY*
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mRNA from alignment at scaffold_8:826728..828566-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4096 ID=mRNA_4096|Name=jgi.p|Nanoce1779_2|586531|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp|location=Sequence derived from alignment at scaffold_8:826728..828566- (Nannochloropsis oceanica)
GTACCGGAGGAAGGGAGGAGGTAAAGAGGAACTTGATGAAAAGGGTGGAG
GACACCTCGGCTCTGGTCGGTCTAAATTGGCGCGACAAGAACTACATGGT
ACGGAGAGAGGGAGGGAGGGAGGGAGGAAGGAAGGGAGGGAGAGAGGGAG
GAAAGGAGGAAGGAAGGGAGGGAGGGGGGGAGATGGATTCATTTGTTTGT
GTCGGACGAAGAGATTATGATAGATCGTGTGTGCTCGAGCTTGATTATTT
GTCACGATAGTCATACAGAGTTGCCTCGCTTTCCCCTTCGGTCTTGTGTC
TCACCCCTTCCTCCTGCCCTTCCTCCTTCCCTCCCTCCCTCTTTTCCACC
AACACAGGGCGTGGTGTACACCACGAACGACGATGGTAAGTGCGACCCTT
TGGAAGTGAAGCACATCTTCTGTTTCCCTTACGGTTGCACGGTTTTCTGG
GGCTGCACCAAGGAGGAGGAAGAGCTCTTCATATCCATGCTTCTCCCGTT
CGCCGTCGAGCCCGTCTCAGTCATGGAGCGGGAGGAGAGCCACGATGATT
TTGTGTACCTTTACGGGGACTCTCCCATGATCCTTCACTATGAAATCACC
CTCTCGAGCAACGACCCGGAGGAGAAGTTGGCGTTGAGTTTCTCCCTGGC
CCAGAGCGCGAAGCTGTTCGTGTTCGAAGACCGCGTCGACGGGACCATCA
CCAGCACCAAGCACATCCCGATCCACCTGGCGGAGTTCGGGAAGATCAAC
GTGAGCCGGCGGGAGATATCCAAATTGACGGGGAAGGTCTTCTTGGAGCG
GAATGAAGTCAACCTCCACTCGGACATCCTTGACACCCCCGAATGGTTTT
GGGAGGCGGATCTGTGGGAGCCGCGGTATGTGGCTTTCTGCAAGTATCTG
GATTTGCCGAACCGGATAAACATTTTGAATAAACGGTTGGACATCCTGAG
AGAGTTGCTTAATGTGCTCGAGACGCAACTGGATAACTCCCACTCCACGA
AGGTGGGGAAGGAAGGGAGGGAGGAAGGGAGGGAGGCAGAGGGGGTGGGG
GATCCTCATCAAAACTTCACAACCCATCTTCCCCTCCCCCCCGTTTCTTT
TCATAACTATTGCCTTCTCCCGTTGATACTCACTCATCTTGACGATAAAT
TTCACGTCTCCTCATTCTTTCCCCCCCCCTTCCCCCCACAGCTGGAATTG
ATTGTCATCGCCCTCATTATCGTGGAGGTGGTGTTGCAGGTGCTTGAGAT
CGCCTTGAATGACCTCTTGCACCTGGACAGGTATCAGTACTAAGGAGGCA
GGGAAGGAGGGAGAGAGGGAGGTGGAAATACGCATATCTGCTTGTTGTTT
TGCATGTGCTTGGTTTTTTGTATGGTAGAGGTACATTAGAGGTTTCTATT
ATTAAGACGTAACGTGCCCAAGTGTGTGGTGTCTTGACTTTCTTTTGGTG
TGCAGGTCTAGGTGGTGTATGCTTGAACGCAAAAAGGGCAACGCGCACAG
CAGCGAGCACGGACAAAGAGCGAAGGAAAATCGCAGACGGGAAAGAGCGC
GAGGACGATAAAAGAACGAAGGCAAGCGAGGAAAGAACCAAATATACACC
ACCACGTGAACAAATGTGTAAGCGTGTTATTAAAGTTAGACCCCGTCGGA
TCTAAGAACTTTTACAACATGGAACTGTGTTAGGGGAGATCGATGTAAGC
AGTGAAGTGCTGATCATGGTCAACCCCGTTAACTGCTGGGGGGGATGTGC
TTGTTGCTAAAATGCTGCAAAACTGCAATACAACAGGCGCCAGGGGGAGA
GAACGAGTAAAGGCATCGTCCAAGCATACAAGAAGTAAA
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Coding sequence (CDS) from alignment at scaffold_8:826728..828566-

>mRNA_4096 ID=mRNA_4096|Name=jgi.p|Nanoce1779_2|586531|organism=Nannochloropsis oceanica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_8:826728..828566- (Nannochloropsis oceanica)
CTGGAATTGATTGTCATCGCCCTCATTATCGTGGAGGTGGTGTTGCAGGT
GCTTGAGATCGCCTTGAATGACCTCTTGCACCTGGACAGGTATCAGTACT
AAGGCGTGGTGTACACCACGAACGACGATGGTAAGTGCGACCCTTTGGAA
GTGAAGCACATCTTCTGTTTCCCTTACGGTTGCACGGTTTTCTGGGGCTG
CACCAAGGAGGAGGAAGAGCTCTTCATATCCATGCTTCTCCCGTTCGCCG
TCGAGCCCGTCTCAGTCATGGAGCGGGAGGAGAGCCACGATGATTTTGTG
TACCTTTACGGGGACTCTCCCATGATCCTTCACTATGAAATCACCCTCTC
GAGCAACGACCCGGAGGAGAAGTTGGCGTTGAGTTTCTCCCTGGCCCAGA
GCGCGAAGCTGTTCGTGTTCGAAGACCGCGTCGACGGGACCATCACCAGC
ACCAAGCACATCCCGATCCACCTGGCGGAGTTCGGGAAGATCAACGTGAG
CCGGCGGGAGATATCCAAATTGACGGGGAAGGTCTTCTTGGAGCGGAATG
AAGTCAACCTCCACTCGGACATCCTTGACACCCCCGAATGGTTTTGGGAG
GCGGATCTGTGGGAGCCGCGGTATGTGGCTTTCTGCAAGTATCTGGATTT
GCCGAACCGGATAAACATTTTGAATAAACGGTTGGACATCCTGAGAGAGT
TGCTTAATGTGCTCGAGACGCAACTGGATAACTCCCACTCCACGAAGATG
AAAAGGGTGGAGGACACCTCGGCTCTGGTCGGTCTAAATTGGCGCGACAA
GAACTACATGCTGGAATTGATTGTCATCGCCCTCATTATCGTGGAGGTGG
TGTTGCAGGTGCTTGAGATCGCCTTGAATGACCTCTTGCACCTGGACAGG
TATCAGTACTAAGGCGTGGTGTACACCACGAACGACGATGGTAAGTGCGA
CCCTTTGGAAGTGAAGCACATCTTCTGTTTCCCTTACGGTTGCACGGTTT
TCTGGGGCTGCACCAAGGAGGAGGAAGAGCTCTTCATATCCATGCTTCTC
CCGTTCGCCGTCGAGCCCGTCTCAGTCATGGAGCGGGAGGAGAGCCACGA
TGATTTTGTGTACCTTTACGGGGACTCTCCCATGATCCTTCACTATGAAA
TCACCCTCTCGAGCAACGACCCGGAGGAGAAGTTGGCGTTGAGTTTCTCC
CTGGCCCAGAGCGCGAAGCTGTTCGTGTTCGAAGACCGCGTCGACGGGAC
CATCACCAGCACCAAGCACATCCCGATCCACCTGGCGGAGTTCGGGAAGA
TCAACGTGAGCCGGCGGGAGATATCCAAATTGACGGGGAAGGTCTTCTTG
GAGCGGAATGAAGTCAACCTCCACTCGGACATCCTTGACACCCCCGAATG
GTTTTGGGAGGCGGATCTGTGGGAGCCGCGGTATGTGGCTTTCTGCAAGT
ATCTGGATTTGCCGAACCGGATAAACATTTTGAATAAACGGTTGGACATC
CTGAGAGAGTTGCTTAATGTGCTCGAGACGCAACTGGATAACTCCCACTC
CACGAAGATGAAAAGGGTGGAGGACACCTCGGCTCTGGTCGGTCTAAATT
GGCGCGACAAGAACTACATGCTGGAATTGATTGTCATCGCCCTCATTATC
GTGGAGGTGGTGTTGCAGGTGCTTGAGATCGCCTTGAATGACCTCTTGCA
CCTGGACAGGTATCAGTACTAAGGCGTGGTGTACACCACGAACGACGATG
GTAAGTGCGACCCTTTGGAAGTGAAGCACATCTTCTGTTTCCCTTACGGT
TGCACGGTTTTCTGGGGCTGCACCAAGGAGGAGGAAGAGCTCTTCATATC
CATGCTTCTCCCGTTCGCCGTCGAGCCCGTCTCAGTCATGGAGCGGGAGG
AGAGCCACGATGATTTTGTGTACCTTTACGGGGACTCTCCCATGATCCTT
CACTATGAAATCACCCTCTCGAGCAACGACCCGGAGGAGAAGTTGGCGTT
GAGTTTCTCCCTGGCCCAGAGCGCGAAGCTGTTCGTGTTCGAAGACCGCG
TCGACGGGACCATCACCAGCACCAAGCACATCCCGATCCACCTGGCGGAG
TTCGGGAAGATCAACGTGAGCCGGCGGGAGATATCCAAATTGACGGGGAA
GGTCTTCTTGGAGCGGAATGAAGTCAACCTCCACTCGGACATCCTTGACA
CCCCCGAATGGTTTTGGGAGGCGGATCTGTGGGAGCCGCGGTATGTGGCT
TTCTGCAAGTATCTGGATTTGCCGAACCGGATAAACATTTTGAATAAACG
GTTGGACATCCTGAGAGAGTTGCTTAATGTGCTCGAGACGCAACTGGATA
ACTCCCACTCCACGAAGATGAAAAGGGTGGAGGACACCTCGGCTCTGGTC
GGTCTAAATTGGCGCGACAAGAACTACATG
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Synonyms
Publications