jgi.p|Nanoce1779_2|586527, mRNA_4095 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586527
Unique NamemRNA_4095
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1136
Alignment locationscaffold_8:824555..825690 -

Link to JBrowse

Properties
Property NameValue
TranscriptId586613
TrackFilteredModels2
ProteinId586527
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:824555..825690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586527gene_4095Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586527mRNA_4095-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4095CDS_4095Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4095 ID=mRNA_4095|Name=jgi.p|Nanoce1779_2|586527|organism=Nannochloropsis oceanica|type=mRNA|length=1136bp
GGGTTTGGGGCGGTGATGGGCGGGGAAGGAGTAAAGGGAATGAGTGATAG
TGGCATGAGCAGTACCAGCATTGAGAGGAGGGAGGAGGGAATGATGGAGG
GATGGAGGGGGCATCACCAGCAACAGCAAATGTTGTCATCGGCAGGCTCG
GCGGCAGCTGCTTTCCTAGGGACTGGGTTAAGGGGGGGCAAGATGACGAT
GGATGGTAGCGAAGAAACTGGAGGTGGTGGTGGGAGAGGGAAAAGTATGT
CGCCGATGACCTTGCGGCCTCCGACATCAGTAGAAGGGAGGGGGAGAGGA
GTAGTGATGAGCAGCTCCAACAGTTTGAGTGCGAGTAGCGAGGGTGACAG
GGAAGAGGAGGAGGAGAAAGAGGAGATGGGGGACGACTATAACGAGGAGC
TGGATGGTGATGAAAGCTATTCGGATTCGGTGGAGGATGGCGGGGGAGCA
AACGGGCAGAAGGCGCGAGCCGCGAGGAAGAAGGCGTTTGCGAGCTTGAG
TAAGGAGGAGAGGGTAGAACGGAGGAAGGAGAAGGCGAGGCTGTATTCGC
ATGTGGCGCGGAGACGGCAGGAGAGTAACATGAGGGAGTTGAAGGCGGAG
ATGGAGTGCTTGACGGTTTATCGACTGATAATCGAAGAGAGCCCTGATAT
GATCGTGGTGCTACACCCCGATCTCGAGGGGCGGGTTTTGTTCGCCAATG
CGGCCTTTGCCCGGGGAGTGGAAGCCATGCCGGGGGGGTATATGGGAAAG
CCGCTTTGGGCGGTGATCCACGAGACCCATCGGGGGGTGGTGAATGATGC
GATTAGAAACCTTTTGATGAACCCAGAGACCATAACCCGCTTGAAGATTC
AGGCGAAGTACCCACATCCGGATTACCCAGGGCAAGGACCGATGATGGAT
CTTACGATGAGGCATACGCCCACGGGCCTTGTGTGTTATATGCGACAGGC
TTAGGCAGTTTAAAGTGGGGGGCGGGGGGGGGGGAGGATGAAGATAAGGA
GCGGAGGAGGATGTAAGTGGGTGTATGTGTAAAGCGCCCCGTGTCGGGGA
GGCCGGAGACTTAGAGAGGGAGGGAGGGAGGGAGAGAGGGCAGGAGTGTA
TTTGTATTGTTGTAGTTATTACCGCGTGTGTATGCG
back to top

protein sequence of jgi.p|Nanoce1779_2|586527

>mRNA_4095-protein ID=mRNA_4095-protein|Name=jgi.p|Nanoce1779_2|586527|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MGGEGVKGMSDSGMSSTSIERREEGMMEGWRGHHQQQQMLSSAGSAAAAF
LGTGLRGGKMTMDGSEETGGGGGRGKSMSPMTLRPPTSVEGRGRGVVMSS
SNSLSASSEGDREEEEEKEEMGDDYNEELDGDESYSDSVEDGGGANGQKA
RAARKKAFASLSKEERVERRKEKARLYSHVARRRQESNMRELKAEMECLT
VYRLIIEESPDMIVVLHPDLEGRVLFANAAFARGVEAMPGGYMGKPLWAV
IHETHRGVVNDAIRNLLMNPETITRLKIQAKYPHPDYPGQGPMMDLTMRH
TPTGLVCYMRQA*
back to top

mRNA from alignment at scaffold_8:824555..825690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4095 ID=mRNA_4095|Name=jgi.p|Nanoce1779_2|586527|organism=Nannochloropsis oceanica|type=mRNA|length=1136bp|location=Sequence derived from alignment at scaffold_8:824555..825690- (Nannochloropsis oceanica)
GGGTTTGGGGCGGTGATGGGCGGGGAAGGAGTAAAGGGAATGAGTGATAG
TGGCATGAGCAGTACCAGCATTGAGAGGAGGGAGGAGGGAATGATGGAGG
GATGGAGGGGGCATCACCAGCAACAGCAAATGTTGTCATCGGCAGGCTCG
GCGGCAGCTGCTTTCCTAGGGACTGGGTTAAGGGGGGGCAAGATGACGAT
GGATGGTAGCGAAGAAACTGGAGGTGGTGGTGGGAGAGGGAAAAGTATGT
CGCCGATGACCTTGCGGCCTCCGACATCAGTAGAAGGGAGGGGGAGAGGA
GTAGTGATGAGCAGCTCCAACAGTTTGAGTGCGAGTAGCGAGGGTGACAG
GGAAGAGGAGGAGGAGAAAGAGGAGATGGGGGACGACTATAACGAGGAGC
TGGATGGTGATGAAAGCTATTCGGATTCGGTGGAGGATGGCGGGGGAGCA
AACGGGCAGAAGGCGCGAGCCGCGAGGAAGAAGGCGTTTGCGAGCTTGAG
TAAGGAGGAGAGGGTAGAACGGAGGAAGGAGAAGGCGAGGCTGTATTCGC
ATGTGGCGCGGAGACGGCAGGAGAGTAACATGAGGGAGTTGAAGGCGGAG
ATGGAGTGCTTGACGGTTTATCGACTGATAATCGAAGAGAGCCCTGATAT
GATCGTGGTGCTACACCCCGATCTCGAGGGGCGGGTTTTGTTCGCCAATG
CGGCCTTTGCCCGGGGAGTGGAAGCCATGCCGGGGGGGTATATGGGAAAG
CCGCTTTGGGCGGTGATCCACGAGACCCATCGGGGGGTGGTGAATGATGC
GATTAGAAACCTTTTGATGAACCCAGAGACCATAACCCGCTTGAAGATTC
AGGCGAAGTACCCACATCCGGATTACCCAGGGCAAGGACCGATGATGGAT
CTTACGATGAGGCATACGCCCACGGGCCTTGTGTGTTATATGCGACAGGC
TTAGGCAGTTTAAAGTGGGGGGCGGGGGGGGGGGAGGATGAAGATAAGGA
GCGGAGGAGGATGTAAGTGGGTGTATGTGTAAAGCGCCCCGTGTCGGGGA
GGCCGGAGACTTAGAGAGGGAGGGAGGGAGGGAGAGAGGGCAGGAGTGTA
TTTGTATTGTTGTAGTTATTACCGCGTGTGTATGCG
back to top

Coding sequence (CDS) from alignment at scaffold_8:824555..825690-

>mRNA_4095 ID=mRNA_4095|Name=jgi.p|Nanoce1779_2|586527|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at scaffold_8:824555..825690- (Nannochloropsis oceanica)
ATGGGCGGGGAAGGAGTAAAGGGAATGAGTGATAGTGGCATGAGCAGTAC
CAGCATTGAGAGGAGGGAGGAGGGAATGATGGAGGGATGGAGGGGGCATC
ACCAGCAACAGCAAATGTTGTCATCGGCAGGCTCGGCGGCAGCTGCTTTC
CTAGGGACTGGGTTAAGGGGGGGCAAGATGACGATGGATGGTAGCGAAGA
AACTGGAGGTGGTGGTGGGAGAGGGAAAAGTATGTCGCCGATGACCTTGC
GGCCTCCGACATCAGTAGAAGGGAGGGGGAGAGGAGTAGTGATGAGCAGC
TCCAACAGTTTGAGTGCGAGTAGCGAGGGTGACAGGGAAGAGGAGGAGGA
GAAAGAGGAGATGGGGGACGACTATAACGAGGAGCTGGATGGTGATGAAA
GCTATTCGGATTCGGTGGAGGATGGCGGGGGAGCAAACGGGCAGAAGGCG
CGAGCCGCGAGGAAGAAGGCGTTTGCGAGCTTGAGTAAGGAGGAGAGGGT
AGAACGGAGGAAGGAGAAGGCGAGGCTGTATTCGCATGTGGCGCGGAGAC
GGCAGGAGAGTAACATGAGGGAGTTGAAGGCGGAGATGGAGTGCTTGACG
GTTTATCGACTGATAATCGAAGAGAGCCCTGATATGATCGTGGTGCTACA
CCCCGATCTCGAGGGGCGGGTTTTGTTCGCCAATGCGGCCTTTGCCCGGG
GAGTGGAAGCCATGCCGGGGGGGTATATGGGAAAGCCGCTTTGGGCGGTG
ATCCACGAGACCCATCGGGGGGTGGTGAATGATGCGATTAGAAACCTTTT
GATGAACCCAGAGACCATAACCCGCTTGAAGATTCAGGCGAAGTACCCAC
ATCCGGATTACCCAGGGCAAGGACCGATGATGGATCTTACGATGAGGCAT
ACGCCCACGGGCCTTGTGTGTTATATGCGACAGGCTTAG
back to top
Synonyms
Publications