jgi.p|Nanoce1779_2|586490, mRNA_4091 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586490
Unique Name	mRNA_4091
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2182
Alignment location	scaffold_8:815897..818078 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586576
Track	FilteredModels2
ProteinId	586490

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:815897..818078 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586490	gene_4091	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586490	mRNA_4091-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4091	CDS_4091	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:815897..818078+
coding sequence from alignment at scaffold_8:815897..818078+

mRNA sequence

>mRNA_4091 ID=mRNA_4091|Name=jgi.p|Nanoce1779_2|586490|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp
ACCTTAAACGTTATCTGCCCTCAGGAGGCTCCTTCTTGTTCCATAAGCAT
CATGCCGTCCCTATCCTGTAAATGTTCTTTCCCGATCACGGATTTATCCT
GCCTCTCCTCTATTTTCTTGTTACAGTTAAGAAGGGTGTTACTCGCTCGC
ATAGCCGCTCGCCTCGGTCCCTCTGTTACACCCCTTCGCCCCTGTGCTTT
CCTTCCCTTCAACCCTTTGAGCTTCCTCTTCACAGATCCCACCAGCACGC
GCGCACACCGCCACCAACAGACAATGGAAGTCTTCAATGCTAACTATCAG
ATAGGCACGATGATGACGACTGATAAGGCAGCACATGGCCCGTTTTAATT
CGAAGTCCTTTCAACATTATAATTGAACACACCACACCACATCATTAAAA
ACCATGTTGACGGGACATTGGACTAGTCGCCGCTGCGTGATCCGTCGATG
AATTGCACCAAAACTGTCGCCGAAGTTTGCTTAGGTTGCGGCGTCTGAGG
GCGGCGTTGTGCTGCTTACGGCGGCTATGCCGGGCTCCATCCGCGTCAAG
GCGGATGGGTTTGAAGCCAACGAGGAGGATATTGCTGCCGTTTGCTTGTC
TGCAATCAGGGAACTGCAACGCCATTGCCCGGCGCTTCCCACGGAGGATG
TTGTGATTGAGCACGGCGGTGGCGAGGGCCATGCAATCGTACTGCATGAG
CGCAACAACCATGGCGAGGTGGTGATTCGGCTCGACACCTGCAAGACCTT
TTGGAGCCAGTATGCCTATCAGGCCGCTCACGAGATGTGTCACGTCCATT
GCAGTTTCCGCTGTGGTCCGATACAGAACCAGTGGTTCGAAGAGACCGTC
TGTGAGACGGCGTCGCTTTTCTGCCTTCGTGCCATGGCGCACACCTGGAA
GACTGAGCCACCATACCGTCACTGGGCGGACTACGCGACGTCTTTGCTAG
AATACACCGAAGATGTAATTTCCAAACGCATATACAAGGCCGAACTCATT
AACAAAGGCCTTCCCCAATTTTACCGCGACCATGAGACCGAGTTACGGGC
CAACGCATGCGGACGTGAGCTTAACGGCGCCATTGCCCTGGCATTGTTAC
CGTACCTTGAAGAGATGCCGAAGCATTGGGCGGCATTTCATTGGCTGAAT
GCGACAGAACGTCCAGAAAGTGAGCCCTTCGTCGACTACCTGACACGCTG
GGAGCAAAACACGCCAGCGGAATACAAGGCCACGGTGCAGGGCGTGCAGG
CACTCTTCGGGGTTGTTCCGGCAATGGCTCTATCGGAATCTATTCGTATC
GAGGCTGCCGGCTTCGAAGCAGTCCAGGAGGATATCGCTGCAGTCTGTCT
GTCTGCCATCGGCGAACTGCAACGCCACTGTCCGGAGCTGCCCTCTGAGA
GAGTGGTGATCAAGCACGGGACAGAGGTTATGACGCTGTACGAGCGCAAT
AACGACGGTGAGGTCGTGATCCAGCTGGCCACGCGCAATACCTTCTGGTG
CCAGTACGCCTACCAGGTCATCCAGCAATATGCGACTGTGCATTGTGGCC
TCCGCTGCGGTCCGATGCAGAACCAATGGTTTGAGCAGGCTGTGTGTGAG
ACAGCTTCACTCTTTTGCCTCCGCGGCATGGCCCGCTCGTGGAAGACCGA
GGCACCCTATTCCCACTGGAGAAGTTACGCATCCGCCTTCGCGGAATATG
CCGACGATATGACAACTAAATGCACGTACAAAGTGGAGCTTATGAGTAAG
GGTCTTGTCCACTTTTATCGAGACCATGAGGCCGAGCTACGCGCCGCCAA
TGCAGACAGACGCGACCTCACCGCGGCCATCGCCCTGGCATTGTTGCCAT
TCCTGGAGGAGGCGCCCTGCCGTTGGGCGGCTCTTCGTTGGTTGAACGCG
ACGGCATGTCCCGAAAACGAGCCTTTCGCCGACTACCTAACACGCTGGAG
GAACAACACTCCAGAGAAGCATCAGGACGCAGTGCATGATGTGCGTCAGC
TATTTGGACTTTGCATAAATAATTCGCCATGTCCCCCCGGGGTCTCACCG
GAGTGTGTATCTACACGGCAGCAGCAAGCGGGAATTGAAAGACAAGAATA
AAACGAACGAATGAATAGATAGCATTGCTTCTCGATACGAAAAAGGTGGA
TAATATAAGGAACAAGAAATAATATACGCCCC

protein sequence of jgi.p|Nanoce1779_2|586490

>mRNA_4091-protein ID=mRNA_4091-protein|Name=jgi.p|Nanoce1779_2|586490|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MPGSIRVKADGFEANEEDIAAVCLSAIRELQRHCPALPTEDVVIEHGGGE
GHAIVLHERNNHGEVVIRLDTCKTFWSQYAYQAAHEMCHVHCSFRCGPIQ
NQWFEETVCETASLFCLRAMAHTWKTEPPYRHWADYATSLLEYTEDVISK
RIYKAELINKGLPQFYRDHETELRANACGRELNGAIALALLPYLEEMPKH
WAAFHWLNATERPESEPFVDYLTRWEQNTPAEYKATVQGVQALFGVVPAM
ALSESIRIEAAGFEAVQEDIAAVCLSAIGELQRHCPELPSERVVIKHGTE
VMTLYERNNDGEVVIQLATRNTFWCQYAYQVIQQYATVHCGLRCGPMQNQ
WFEQAVCETASLFCLRGMARSWKTEAPYSHWRSYASAFAEYADDMTTKCT
YKVELMSKGLVHFYRDHEAELRAANADRRDLTAAIALALLPFLEEAPCRW
AALRWLNATACPENEPFADYLTRWRNNTPEKHQDAVHDVRQLFGLCINNS
PCPPGVSPECVSTRQQQAGIERQE*

mRNA from alignment at scaffold_8:815897..818078+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4091 ID=mRNA_4091|Name=jgi.p|Nanoce1779_2|586490|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp|location=Sequence derived from alignment at scaffold_8:815897..818078+ (Nannochloropsis oceanica)
ACCTTAAACGTTATCTGCCCTCAGGAGGCTCCTTCTTGTTCCATAAGCAT
CATGCCGTCCCTATCCTGTAAATGTTCTTTCCCGATCACGGATTTATCCT
GCCTCTCCTCTATTTTCTTGTTACAGTTAAGAAGGGTGTTACTCGCTCGC
ATAGCCGCTCGCCTCGGTCCCTCTGTTACACCCCTTCGCCCCTGTGCTTT
CCTTCCCTTCAACCCTTTGAGCTTCCTCTTCACAGATCCCACCAGCACGC
GCGCACACCGCCACCAACAGACAATGGAAGTCTTCAATGCTAACTATCAG
ATAGGCACGATGATGACGACTGATAAGGCAGCACATGGCCCGTTTTAATT
CGAAGTCCTTTCAACATTATAATTGAACACACCACACCACATCATTAAAA
ACCATGTTGACGGGACATTGGACTAGTCGCCGCTGCGTGATCCGTCGATG
AATTGCACCAAAACTGTCGCCGAAGTTTGCTTAGGTTGCGGCGTCTGAGG
GCGGCGTTGTGCTGCTTACGGCGGCTATGCCGGGCTCCATCCGCGTCAAG
GCGGATGGGTTTGAAGCCAACGAGGAGGATATTGCTGCCGTTTGCTTGTC
TGCAATCAGGGAACTGCAACGCCATTGCCCGGCGCTTCCCACGGAGGATG
TTGTGATTGAGCACGGCGGTGGCGAGGGCCATGCAATCGTACTGCATGAG
CGCAACAACCATGGCGAGGTGGTGATTCGGCTCGACACCTGCAAGACCTT
TTGGAGCCAGTATGCCTATCAGGCCGCTCACGAGATGTGTCACGTCCATT
GCAGTTTCCGCTGTGGTCCGATACAGAACCAGTGGTTCGAAGAGACCGTC
TGTGAGACGGCGTCGCTTTTCTGCCTTCGTGCCATGGCGCACACCTGGAA
GACTGAGCCACCATACCGTCACTGGGCGGACTACGCGACGTCTTTGCTAG
AATACACCGAAGATGTAATTTCCAAACGCATATACAAGGCCGAACTCATT
AACAAAGGCCTTCCCCAATTTTACCGCGACCATGAGACCGAGTTACGGGC
CAACGCATGCGGACGTGAGCTTAACGGCGCCATTGCCCTGGCATTGTTAC
CGTACCTTGAAGAGATGCCGAAGCATTGGGCGGCATTTCATTGGCTGAAT
GCGACAGAACGTCCAGAAAGTGAGCCCTTCGTCGACTACCTGACACGCTG
GGAGCAAAACACGCCAGCGGAATACAAGGCCACGGTGCAGGGCGTGCAGG
CACTCTTCGGGGTTGTTCCGGCAATGGCTCTATCGGAATCTATTCGTATC
GAGGCTGCCGGCTTCGAAGCAGTCCAGGAGGATATCGCTGCAGTCTGTCT
GTCTGCCATCGGCGAACTGCAACGCCACTGTCCGGAGCTGCCCTCTGAGA
GAGTGGTGATCAAGCACGGGACAGAGGTTATGACGCTGTACGAGCGCAAT
AACGACGGTGAGGTCGTGATCCAGCTGGCCACGCGCAATACCTTCTGGTG
CCAGTACGCCTACCAGGTCATCCAGCAATATGCGACTGTGCATTGTGGCC
TCCGCTGCGGTCCGATGCAGAACCAATGGTTTGAGCAGGCTGTGTGTGAG
ACAGCTTCACTCTTTTGCCTCCGCGGCATGGCCCGCTCGTGGAAGACCGA
GGCACCCTATTCCCACTGGAGAAGTTACGCATCCGCCTTCGCGGAATATG
CCGACGATATGACAACTAAATGCACGTACAAAGTGGAGCTTATGAGTAAG
GGTCTTGTCCACTTTTATCGAGACCATGAGGCCGAGCTACGCGCCGCCAA
TGCAGACAGACGCGACCTCACCGCGGCCATCGCCCTGGCATTGTTGCCAT
TCCTGGAGGAGGCGCCCTGCCGTTGGGCGGCTCTTCGTTGGTTGAACGCG
ACGGCATGTCCCGAAAACGAGCCTTTCGCCGACTACCTAACACGCTGGAG
GAACAACACTCCAGAGAAGCATCAGGACGCAGTGCATGATGTGCGTCAGC
TATTTGGACTTTGCATAAATAATTCGCCATGTCCCCCCGGGGTCTCACCG
GAGTGTGTATCTACACGGCAGCAGCAAGCGGGAATTGAAAGACAAGAATA
AAACGAACGAATGAATAGATAGCATTGCTTCTCGATACGAAAAAGGTGGA
TAATATAAGGAACAAGAAATAATATACGCCCC

Coding sequence (CDS) from alignment at scaffold_8:815897..818078+

>mRNA_4091 ID=mRNA_4091|Name=jgi.p|Nanoce1779_2|586490|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at scaffold_8:815897..818078+ (Nannochloropsis oceanica)
ATGCCGGGCTCCATCCGCGTCAAGGCGGATGGGTTTGAAGCCAACGAGGA
GGATATTGCTGCCGTTTGCTTGTCTGCAATCAGGGAACTGCAACGCCATT
GCCCGGCGCTTCCCACGGAGGATGTTGTGATTGAGCACGGCGGTGGCGAG
GGCCATGCAATCGTACTGCATGAGCGCAACAACCATGGCGAGGTGGTGAT
TCGGCTCGACACCTGCAAGACCTTTTGGAGCCAGTATGCCTATCAGGCCG
CTCACGAGATGTGTCACGTCCATTGCAGTTTCCGCTGTGGTCCGATACAG
AACCAGTGGTTCGAAGAGACCGTCTGTGAGACGGCGTCGCTTTTCTGCCT
TCGTGCCATGGCGCACACCTGGAAGACTGAGCCACCATACCGTCACTGGG
CGGACTACGCGACGTCTTTGCTAGAATACACCGAAGATGTAATTTCCAAA
CGCATATACAAGGCCGAACTCATTAACAAAGGCCTTCCCCAATTTTACCG
CGACCATGAGACCGAGTTACGGGCCAACGCATGCGGACGTGAGCTTAACG
GCGCCATTGCCCTGGCATTGTTACCGTACCTTGAAGAGATGCCGAAGCAT
TGGGCGGCATTTCATTGGCTGAATGCGACAGAACGTCCAGAAAGTGAGCC
CTTCGTCGACTACCTGACACGCTGGGAGCAAAACACGCCAGCGGAATACA
AGGCCACGGTGCAGGGCGTGCAGGCACTCTTCGGGGTTGTTCCGGCAATG
GCTCTATCGGAATCTATTCGTATCGAGGCTGCCGGCTTCGAAGCAGTCCA
GGAGGATATCGCTGCAGTCTGTCTGTCTGCCATCGGCGAACTGCAACGCC
ACTGTCCGGAGCTGCCCTCTGAGAGAGTGGTGATCAAGCACGGGACAGAG
GTTATGACGCTGTACGAGCGCAATAACGACGGTGAGGTCGTGATCCAGCT
GGCCACGCGCAATACCTTCTGGTGCCAGTACGCCTACCAGGTCATCCAGC
AATATGCGACTGTGCATTGTGGCCTCCGCTGCGGTCCGATGCAGAACCAA
TGGTTTGAGCAGGCTGTGTGTGAGACAGCTTCACTCTTTTGCCTCCGCGG
CATGGCCCGCTCGTGGAAGACCGAGGCACCCTATTCCCACTGGAGAAGTT
ACGCATCCGCCTTCGCGGAATATGCCGACGATATGACAACTAAATGCACG
TACAAAGTGGAGCTTATGAGTAAGGGTCTTGTCCACTTTTATCGAGACCA
TGAGGCCGAGCTACGCGCCGCCAATGCAGACAGACGCGACCTCACCGCGG
CCATCGCCCTGGCATTGTTGCCATTCCTGGAGGAGGCGCCCTGCCGTTGG
GCGGCTCTTCGTTGGTTGAACGCGACGGCATGTCCCGAAAACGAGCCTTT
CGCCGACTACCTAACACGCTGGAGGAACAACACTCCAGAGAAGCATCAGG
ACGCAGTGCATGATGTGCGTCAGCTATTTGGACTTTGCATAAATAATTCG
CCATGTCCCCCCGGGGTCTCACCGGAGTGTGTATCTACACGGCAGCAGCA
AGCGGGAATTGAAAGACAAGAATAA

Synonyms

Publications