jgi.p|Nanoce1779_2|586478, mRNA_4090 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586478
Unique NamemRNA_4090
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1225
Alignment locationscaffold_8:812943..814295 +

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Properties
Property NameValue
TranscriptId586564
TrackFilteredModels2
ProteinId586478
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:812943..814295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586478gene_4090Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586478mRNA_4090-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4090CDS_4090Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4090 ID=mRNA_4090|Name=jgi.p|Nanoce1779_2|586478|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp
ACAGTTCACGCGATGGGGCCCTTTCGCGAAAGTCCAAAACGAGCCGACAT
GTCGGCGCCATTAACAACAATTACGACGCCAATCACGAAGAGGAAGCGGG
GCCGGCCGGAACACCAGAAGACATGGCTTCAAGAATTCTTGCTCGGCGGC
GTCTCGACAAGTGTGGCATGCCTATTCAGCAACCCGTTTGATGTGCTCAA
GGTACGAATGCAACTCCAAGGTGAACTCAAGAGCAAAGGCACCTACCAAG
TCCACTACCGTAACTTCCTCCATGCCGCTTGGACCATTATGCGGGTCGAG
GGCATCCTGGCCTTACAAAAGGGATTGGGACCCGCGATCCTTTACCAATT
TGTAATGAACGGGGTAAGGCTGGGCACGTTCCAAACGCTCGTCAACCGCG
GAGTGACCGCCGATAACGAAATGAGGACGAGAGAACAAGGAGGACATACT
CGTAGCATGAGAACCATGAGTAGTGGCAGCTCCAATAGCAGTAGTAGTGG
CATTAGTAGCAACAGTGGTGGCGGCAAGCTGGCCCGCTCCGCATTGGCTG
GAGCATTGGGTGGAGCTTTGGGTGGGGTTGTGGGTAGTCCCCTCTACCTC
GTCAAAACGCAATTACAATCACGCGCACTACAAGCTATTGCTGTTGGACA
TCAACATCACCATACCTCGACTTATCAGGCCTTAAGAGAAATACACATGC
AACATGGTTACAGAGGCTTGTGGCGAGGGGTGGAGGGAGCGGTGCCGCGA
CTGATGCTGGGATCCGCATTGCAGCTGTCTACCTTTTCGTATATCAAAGA
GGCGGTTCGGAAGTGGGGATGGGTGGATGAGGGATGGGTCCCTGTACTGG
CATCATTACTTTCGAGCGTGAATATCATTTTGTTTATGGAGCCATTGGAT
GTGGTGAGGACGCGGCTGTATAATCAGCCAACGGATGAAAGAGGAAGGGG
AATTTATTACAGGGGGTTTGTGGATTGTTTTACAAGGGTGGTGGAAAAAG
AAGGATTCTTCCATGGAATGTACAAGGGGGCGGGGGCTGCATACTTCAGG
ATGGCACCGCAGGCGATCCTTGGGCTGAGTTTCTGGGACTCGTTCAGGAG
GATCTGGTATGGCAGGGGGTTCGGGAGGAATGGGAATGAAGAGATGGAGG
AGTGAAAGACTTGAGGGACAGAAACCAAGCAAGCCTAGGCAAAAAAGTAA
CAACAAATTATTTTTTCCATAAAAG
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protein sequence of jgi.p|Nanoce1779_2|586478

>mRNA_4090-protein ID=mRNA_4090-protein|Name=jgi.p|Nanoce1779_2|586478|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MGPFRESPKRADMSAPLTTITTPITKRKRGRPEHQKTWLQEFLLGGVSTS
VACLFSNPFDVLKVRMQLQGELKSKGTYQVHYRNFLHAAWTIMRVEGILA
LQKGLGPAILYQFVMNGVRLGTFQTLVNRGVTADNEMRTREQGGHTRSMR
TMSSGSSNSSSSGISSNSGGGKLARSALAGALGGALGGVVGSPLYLVKTQ
LQSRALQAIAVGHQHHHTSTYQALREIHMQHGYRGLWRGVEGAVPRLMLG
SALQLSTFSYIKEAVRKWGWVDEGWVPVLASLLSSVNIILFMEPLDVVRT
RLYNQPTDERGRGIYYRGFVDCFTRVVEKEGFFHGMYKGAGAAYFRMAPQ
AILGLSFWDSFRRIWYGRGFGRNGNEEMEE*
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mRNA from alignment at scaffold_8:812943..814295+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4090 ID=mRNA_4090|Name=jgi.p|Nanoce1779_2|586478|organism=Nannochloropsis oceanica|type=mRNA|length=1353bp|location=Sequence derived from alignment at scaffold_8:812943..814295+ (Nannochloropsis oceanica)
ACAGTTCACGCGATGGGGCCCTTTCGCGAAAGTCCAAAACGAGCCGACAT
GTCGGCGCCATTAACAACAATTACGACGCCAATCACGAAGAGGAAGCGGG
GCCGGCCGGAACACCAGAAGACATGGCTTCAAGAATTCTTGCTCGGCGGC
GTCTCGACAAGTGTGGCATGCCTATTCAGCAACCCGTTTGATGTGCTCAA
GGTACTATCAGAAATGTATGCTTTTCGTCTATTTGTCTCTATCCAAGTCC
TCTCGCCCGCCTATTTTAGTTCCCTCAAGTCCCATTCATTTTATTTCCTT
CCCTCCTTCCCCACACCCACTCCCTCCAGGTACGAATGCAACTCCAAGGT
GAACTCAAGAGCAAAGGCACCTACCAAGTCCACTACCGTAACTTCCTCCA
TGCCGCTTGGACCATTATGCGGGTCGAGGGCATCCTGGCCTTACAAAAGG
GATTGGGACCCGCGATCCTTTACCAATTTGTAATGAACGGGGTAAGGCTG
GGCACGTTCCAAACGCTCGTCAACCGCGGAGTGACCGCCGATAACGAAAT
GAGGACGAGAGAACAAGGAGGACATACTCGTAGCATGAGAACCATGAGTA
GTGGCAGCTCCAATAGCAGTAGTAGTGGCATTAGTAGCAACAGTGGTGGC
GGCAAGCTGGCCCGCTCCGCATTGGCTGGAGCATTGGGTGGAGCTTTGGG
TGGGGTTGTGGGTAGTCCCCTCTACCTCGTCAAAACGCAATTACAATCAC
GCGCACTACAAGCTATTGCTGTTGGACATCAACATCACCATACCTCGACT
TATCAGGCCTTAAGAGAAATACACATGCAACATGGTTACAGAGGCTTGTG
GCGAGGGGTGGAGGGAGCGGTGCCGCGACTGATGCTGGGATCCGCATTGC
AGCTGTCTACCTTTTCGTATATCAAAGAGGCGGTTCGGAAGTGGGGATGG
GTGGATGAGGGATGGGTCCCTGTACTGGCATCATTACTTTCGAGCGTGAA
TATCATTTTGTTTATGGAGCCATTGGATGTGGTGAGGACGCGGCTGTATA
ATCAGCCAACGGATGAAAGAGGAAGGGGAATTTATTACAGGGGGTTTGTG
GATTGTTTTACAAGGGTGGTGGAAAAAGAAGGATTCTTCCATGGAATGTA
CAAGGGGGCGGGGGCTGCATACTTCAGGATGGCACCGCAGGCGATCCTTG
GGCTGAGTTTCTGGGACTCGTTCAGGAGGATCTGGTATGGCAGGGGGTTC
GGGAGGAATGGGAATGAAGAGATGGAGGAGTGAAAGACTTGAGGGACAGA
AACCAAGCAAGCCTAGGCAAAAAAGTAACAACAAATTATTTTTTCCATAA
AAG
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Coding sequence (CDS) from alignment at scaffold_8:812943..814295+

>mRNA_4090 ID=mRNA_4090|Name=jgi.p|Nanoce1779_2|586478|organism=Nannochloropsis oceanica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_8:812943..814295+ (Nannochloropsis oceanica)
ATGGGGCCCTTTCGCGAAAGTCCAAAACGAGCCGACATGTCGGCGCCATT
AACAACAATTACGACGCCAATCACGAAGAGGAAGCGGGGCCGGCCGGAAC
ACCAGAAGACATGGCTTCAAGAATTCTTGCTCGGCGGCGTCTCGACAAGT
GTGGCATGCCTATTCAGCAACCCGTTTGATGTGCTCAAGGTACGAATGCA
ACTCCAAGGTGAACTCAAGAGCAAAGGCACCTACCAAGTCCACTACCGTA
ACTTCCTCCATGCCGCTTGGACCATTATGCGGGTCGAGGGCATCCTGGCC
TTACAAAAGGGATTGGGACCCGCGATCCTTTACCAATTTGTAATGAACGG
GGTAAGGCTGGGCACGTTCCAAACGCTCGTCAACCGCGGAGTGACCGCCG
ATAACGAAATGAGGACGAGAGAACAAGGAGGACATACTCGTAGCATGAGA
ACCATGAGTAGTGGCAGCTCCAATAGCAGTAGTAGTGGCATTAGTAGCAA
CAGTGGTGGCGGCAAGCTGGCCCGCTCCGCATTGGCTGGAGCATTGGGTG
GAGCTTTGGGTGGGGTTGTGGGTAGTCCCCTCTACCTCGTCAAAACGCAA
TTACAATCACGCGCACTACAAGCTATTGCTGTTGGACATCAACATCACCA
TACCTCGACTTATCAGGCCTTAAGAGAAATACACATGCAACATGGTTACA
GAGGCTTGTGGCGAGGGGTGGAGGGAGCGGTGCCGCGACTGATGCTGGGA
TCCGCATTGCAGCTGTCTACCTTTTCGTATATCAAAGAGGCGGTTCGGAA
GTGGGGATGGGTGGATGAGGGATGGGTCCCTGTACTGGCATCATTACTTT
CGAGCGTGAATATCATTTTGTTTATGGAGCCATTGGATGTGGTGAGGACG
CGGCTGTATAATCAGCCAACGGATGAAAGAGGAAGGGGAATTTATTACAG
GGGGTTTGTGGATTGTTTTACAAGGGTGGTGGAAAAAGAAGGATTCTTCC
ATGGAATGTACAAGGGGGCGGGGGCTGCATACTTCAGGATGGCACCGCAG
GCGATCCTTGGGCTGAGTTTCTGGGACTCGTTCAGGAGGATCTGGTATGG
CAGGGGGTTCGGGAGGAATGGGAATGAAGAGATGGAGGAGTGAATGGGGC
CCTTTCGCGAAAGTCCAAAACGAGCCGACATGTCGGCGCCATTAACAACA
ATTACGACGCCAATCACGAAGAGGAAGCGGGGCCGGCCGGAACACCAGAA
GACATGGCTTCAAGAATTCTTGCTCGGCGGCGTCTCGACAAGTGTGGCAT
GCCTATTCAGCAACCCGTTTGATGTGCTCAAGGTACGAATGCAACTCCAA
GGTGAACTCAAGAGCAAAGGCACCTACCAAGTCCACTACCGTAACTTCCT
CCATGCCGCTTGGACCATTATGCGGGTCGAGGGCATCCTGGCCTTACAAA
AGGGATTGGGACCCGCGATCCTTTACCAATTTGTAATGAACGGGGTAAGG
CTGGGCACGTTCCAAACGCTCGTCAACCGCGGAGTGACCGCCGATAACGA
AATGAGGACGAGAGAACAAGGAGGACATACTCGTAGCATGAGAACCATGA
GTAGTGGCAGCTCCAATAGCAGTAGTAGTGGCATTAGTAGCAACAGTGGT
GGCGGCAAGCTGGCCCGCTCCGCATTGGCTGGAGCATTGGGTGGAGCTTT
GGGTGGGGTTGTGGGTAGTCCCCTCTACCTCGTCAAAACGCAATTACAAT
CACGCGCACTACAAGCTATTGCTGTTGGACATCAACATCACCATACCTCG
ACTTATCAGGCCTTAAGAGAAATACACATGCAACATGGTTACAGAGGCTT
GTGGCGAGGGGTGGAGGGAGCGGTGCCGCGACTGATGCTGGGATCCGCAT
TGCAGCTGTCTACCTTTTCGTATATCAAAGAGGCGGTTCGGAAGTGGGGA
TGGGTGGATGAGGGATGGGTCCCTGTACTGGCATCATTACTTTCGAGCGT
GAATATCATTTTGTTTATGGAGCCATTGGATGTGGTGAGGACGCGGCTGT
ATAATCAGCCAACGGATGAAAGAGGAAGGGGAATTTATTACAGGGGGTTT
GTGGATTGTTTTACAAGGGTGGTGGAAAAAGAAGGATTCTTCCATGGAAT
GTACAAGGGGGCGGGGGCTGCATACTTCAGGATGGCACCGCAGGCGATCC
TTGGGCTGAGTTTCTGGGACTCGTTCAGGAGGATCTGGTATGGCAGGGGG
TTCGGGAGGAATGGGAATGAAGAGATGGAGGAGTGA
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Synonyms
Publications