jgi.p|Nanoce1779_2|577245, mRNA_409 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577245
Unique NamemRNA_409
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length917
Alignment locationscaffold_3:1013593..1014509 -

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Properties
Property NameValue
TranscriptId577331
TrackFilteredModels2
ProteinId577245
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1013593..1014509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577245gene_409Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577245mRNA_409-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_409CDS_409Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_409 ID=mRNA_409|Name=jgi.p|Nanoce1779_2|577245|organism=Nannochloropsis oceanica|type=mRNA|length=917bp
AGCAGAGGGTGATGGAAGAGAGGTGGGATGACGTCGTCCCCAAGACATTA
GGGGAGGAGGTGATGATGAACGGGAGGAGGAGGGGGAGGGAGGGAGAGGA
GGAGCTGCCGGAGGTGTCTCAGGAGAAGTCGACGGAGGGCCTTGGAGCGA
TTTATGAGAAGGAGTACATGCGGTTAGCCATGGGCCAGGGGGGGGGGGAA
GGAGGGGAGAAAGAGACGAAGGAAACTCGGGAAAAGATAGAGATGGCGGC
ATTGTTTCGATTGGTGTGTGGGAAATTGGACGCGCTGTCTAACTTCAATT
TCGTCCCGAAGGCCGCACAGGTTGAGATGACGGTGCAGGCGAACGTGCCT
GCTATCGCGATGGAAGAGGTGTTGCCTTTGGCGGTCGGACACGCCGACAC
CCAGGCACCGGAGGAGGTGCATGGGAAGAAGCGTGGAAGGGAGGGGGTGT
TGAGAGAAGCTGCGGAATTGGACCAAGCGGATCGGAACAGGATTAGGAGG
GATAAGAAGGCAGCACGGCGCAAGGCCAGAAAGCAGGCAGCAACGGAGGA
GAAACTGGTGAATCGCATCAACCCCGGTCTGGGGAACAAATACGCGAAAG
AGAAAATGCGGTCAGAGATCAAGGCGAGTGGGAAGGTGGTGCAAGGCACG
TTGGAAGCAGCGAGTCAACAAGGCGCATACAGTACTTCCGGGAAGTTCTT
TGCGGGCCTTCAGGAGGAGGTGTCGGCGCATGGGGGGGCGTATGCGAAGA
GGAAGGTGACGGAGAAGGGGCAAGAGACGGCGAAGGAGCTGGCGCGGACG
GCGGGGGGGAACAGATTGAAGCTTTAGCATTGAAATATTTGAAATAATTT
TGAGGGATACTGCACGGAACGAAAGTATTGTGTGGGTGCGAGGTTTTTCA
GTCCAACAGCTTGGGTA
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protein sequence of jgi.p|Nanoce1779_2|577245

>mRNA_409-protein ID=mRNA_409-protein|Name=jgi.p|Nanoce1779_2|577245|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MEERWDDVVPKTLGEEVMMNGRRRGREGEEELPEVSQEKSTEGLGAIYEK
EYMRLAMGQGGGEGGEKETKETREKIEMAALFRLVCGKLDALSNFNFVPK
AAQVEMTVQANVPAIAMEEVLPLAVGHADTQAPEEVHGKKRGREGVLREA
AELDQADRNRIRRDKKAARRKARKQAATEEKLVNRINPGLGNKYAKEKMR
SEIKASGKVVQGTLEAASQQGAYSTSGKFFAGLQEEVSAHGGAYAKRKVT
EKGQETAKELARTAGGNRLKL*
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mRNA from alignment at scaffold_3:1013593..1014509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_409 ID=mRNA_409|Name=jgi.p|Nanoce1779_2|577245|organism=Nannochloropsis oceanica|type=mRNA|length=917bp|location=Sequence derived from alignment at scaffold_3:1013593..1014509- (Nannochloropsis oceanica)
AGCAGAGGGTGATGGAAGAGAGGTGGGATGACGTCGTCCCCAAGACATTA
GGGGAGGAGGTGATGATGAACGGGAGGAGGAGGGGGAGGGAGGGAGAGGA
GGAGCTGCCGGAGGTGTCTCAGGAGAAGTCGACGGAGGGCCTTGGAGCGA
TTTATGAGAAGGAGTACATGCGGTTAGCCATGGGCCAGGGGGGGGGGGAA
GGAGGGGAGAAAGAGACGAAGGAAACTCGGGAAAAGATAGAGATGGCGGC
ATTGTTTCGATTGGTGTGTGGGAAATTGGACGCGCTGTCTAACTTCAATT
TCGTCCCGAAGGCCGCACAGGTTGAGATGACGGTGCAGGCGAACGTGCCT
GCTATCGCGATGGAAGAGGTGTTGCCTTTGGCGGTCGGACACGCCGACAC
CCAGGCACCGGAGGAGGTGCATGGGAAGAAGCGTGGAAGGGAGGGGGTGT
TGAGAGAAGCTGCGGAATTGGACCAAGCGGATCGGAACAGGATTAGGAGG
GATAAGAAGGCAGCACGGCGCAAGGCCAGAAAGCAGGCAGCAACGGAGGA
GAAACTGGTGAATCGCATCAACCCCGGTCTGGGGAACAAATACGCGAAAG
AGAAAATGCGGTCAGAGATCAAGGCGAGTGGGAAGGTGGTGCAAGGCACG
TTGGAAGCAGCGAGTCAACAAGGCGCATACAGTACTTCCGGGAAGTTCTT
TGCGGGCCTTCAGGAGGAGGTGTCGGCGCATGGGGGGGCGTATGCGAAGA
GGAAGGTGACGGAGAAGGGGCAAGAGACGGCGAAGGAGCTGGCGCGGACG
GCGGGGGGGAACAGATTGAAGCTTTAGCATTGAAATATTTGAAATAATTT
TGAGGGATACTGCACGGAACGAAAGTATTGTGTGGGTGCGAGGTTTTTCA
GTCCAACAGCTTGGGTA
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Coding sequence (CDS) from alignment at scaffold_3:1013593..1014509-

>mRNA_409 ID=mRNA_409|Name=jgi.p|Nanoce1779_2|577245|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_3:1013593..1014509- (Nannochloropsis oceanica)
ATGGAAGAGAGGTGGGATGACGTCGTCCCCAAGACATTAGGGGAGGAGGT
GATGATGAACGGGAGGAGGAGGGGGAGGGAGGGAGAGGAGGAGCTGCCGG
AGGTGTCTCAGGAGAAGTCGACGGAGGGCCTTGGAGCGATTTATGAGAAG
GAGTACATGCGGTTAGCCATGGGCCAGGGGGGGGGGGAAGGAGGGGAGAA
AGAGACGAAGGAAACTCGGGAAAAGATAGAGATGGCGGCATTGTTTCGAT
TGGTGTGTGGGAAATTGGACGCGCTGTCTAACTTCAATTTCGTCCCGAAG
GCCGCACAGGTTGAGATGACGGTGCAGGCGAACGTGCCTGCTATCGCGAT
GGAAGAGGTGTTGCCTTTGGCGGTCGGACACGCCGACACCCAGGCACCGG
AGGAGGTGCATGGGAAGAAGCGTGGAAGGGAGGGGGTGTTGAGAGAAGCT
GCGGAATTGGACCAAGCGGATCGGAACAGGATTAGGAGGGATAAGAAGGC
AGCACGGCGCAAGGCCAGAAAGCAGGCAGCAACGGAGGAGAAACTGGTGA
ATCGCATCAACCCCGGTCTGGGGAACAAATACGCGAAAGAGAAAATGCGG
TCAGAGATCAAGGCGAGTGGGAAGGTGGTGCAAGGCACGTTGGAAGCAGC
GAGTCAACAAGGCGCATACAGTACTTCCGGGAAGTTCTTTGCGGGCCTTC
AGGAGGAGGTGTCGGCGCATGGGGGGGCGTATGCGAAGAGGAAGGTGACG
GAGAAGGGGCAAGAGACGGCGAAGGAGCTGGCGCGGACGGCGGGGGGGAA
CAGATTGAAGCTTTAG
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Synonyms
Publications