jgi.p|Nanoce1779_2|527342, mRNA_4088 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527342
Unique NamemRNA_4088
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length525
Alignment locationscaffold_8:806556..807612 -

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Properties
Property NameValue
TranscriptId527428
TrackFilteredModels2
ProteinId527342
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:806556..807612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527342gene_4088Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527342mRNA_4088-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4088CDS_4088Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4088 ID=mRNA_4088|Name=jgi.p|Nanoce1779_2|527342|organism=Nannochloropsis oceanica|type=mRNA|length=525bp
ATGGCAAGAATTTTGAGCCAGGAGGTGAAAAAGAAGGCCCCTGTGCTGGC
CAAGCGACGGACGCCGCTAATGAAAGACATGGAGAAGGAGAAGCGAGAGC
GGCATCGCGCCAAGGAGGCGGCGGAGGAAAAACGCGCTGCGCTGAATCAC
CAGCTGTATGTGCCCGATCACAAGGATACGGAGCGGGAGAGGCAGTTGAG
GCGAATTGCGACACGTGGGGTGGTGGCCTTGTTCAATGCCGTGACCAAAG
CGAGGCAAGCGCAGGAGGACGGCGGCGATGCTGCTACAGCCAAAGACATG
TCCAAAAAAGACTTCTTGGAGATGCTGAAATCCTCGACCTCCAAGACTGG
CAGTAGTGCTGCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCACGGAGG
CAAGTTGGGCTGCGATCCAGGATGATTACTTGATGACCGCCCCGAAGATT
AACGACTATGGCTCCGAGGAAGAGGAGGGAGATATGGAAGGGGAGGGCAT
GATGAGTGAGTCAGAAGCAGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|527342

>mRNA_4088-protein ID=mRNA_4088-protein|Name=jgi.p|Nanoce1779_2|527342|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MARILSQEVKKKAPVLAKRRTPLMKDMEKEKRERHRAKEAAEEKRAALNH
QLYVPDHKDTERERQLRRIATRGVVALFNAVTKARQAQEDGGDAATAKDM
SKKDFLEMLKSSTSKTGSSAANSSSSSSSSSTEASWAAIQDDYLMTAPKI
NDYGSEEEEGDMEGEGMMSESEAE*
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mRNA from alignment at scaffold_8:806556..807612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4088 ID=mRNA_4088|Name=jgi.p|Nanoce1779_2|527342|organism=Nannochloropsis oceanica|type=mRNA|length=1057bp|location=Sequence derived from alignment at scaffold_8:806556..807612- (Nannochloropsis oceanica)
ATGGCAAGAATTTTGAGCCAGGAGGTGAAAAAGAAGGCCCCTGTGCTGGC
CAAGCGACGGACGCCGCTAATGAAAGACATGGAGAAGGAGAAGCGAGAGC
GGCATCGCGCCAAGGAGGCGGCGGAGGAAAAACGCGCTGCGCTGAATCAC
CAGCTGTATGTGCCCGATCACAAGGATACGGAGCGGGAGAGGCAGTTGAG
GCGAATTGCGACACGTGGGGTGGTGGCCTTGTTCAATGCCGTGACCAAAG
CGAGGCAAGCGCAGGAGGACGGCGGCGATGCTGCTACAGGTATGTTGTCA
TGTTTACATATTTTTTATCTTATCCTATGCATCCAACATAAGGATTATGT
AATTGTATGGGAAATTGTCCATCCCATTTCTTCGATCCTTGGTATGAGAA
GAGTACTCCTGTACAGAACTTTACCTCTTCCCCCACCCCCTTCAGCCCCC
CGATCCCAAGCTTACGTATGAACCAGTGGTCTTGTGGAAAGCTCAATGTG
ATGATTGCCAAATTCAATGCATAGTTCACCTGAACTTCCCTTGATGATAA
AGATGCGCCATCTTATCTTTCGCCCCTATCTGATACGACTTTCCAACAAG
GCCAGGCCGAGTTTTCAAACGCATGCCTGTTCCCCGTTTTCATTTCATTC
CCTCCGGCCATCATTTACTTATCTATCCACTTTTCTTTCCGGCTCAACTC
CTCCTTGTAGGGAAAGCCGGCGGCGGGGGAAAAGCCAAAGACATGTCCAA
AAAAGACTTCTTGGAGATGCTGAAATCCTCGACCTCCAAGACTGGCAGTA
GTGCTGCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGTTAGTAGA
AAAGGTGAACAAAAAAGGAAGGGAAGGAATCCCTTCCTTGATGAGACGCC
GGGAGGGCAGGGCGGGGAGGAGGAAGCGGAGGCAAGTTGGGCTGCGATCC
AGGATGATTACTTGATGACCGCCCCGAAGATTAACGACTATGGCTCCGAG
GAAGAGGAGGGAGATATGGAAGGGGAGGGCATGATGAGTGAGTCAGAAGC
AGAGTAG
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Coding sequence (CDS) from alignment at scaffold_8:806556..807612-

>mRNA_4088 ID=mRNA_4088|Name=jgi.p|Nanoce1779_2|527342|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at scaffold_8:806556..807612- (Nannochloropsis oceanica)
CGGAGGCAAGTTGGGCTGCGATCCAGGATGATTACTTGATGACCGCCCCG
AAGATTAACGACTATGGCTCCGAGGAAGAGGAGGGAGATATGGAAGGGGA
GGGCATGATGAGTGAGTCAGAAGCAGAGTAGCCAAAGACATGTCCAAAAA
AGACTTCTTGGAGATGCTGAAATCCTCGACCTCCAAGACTGGCAGTAGTG
CTGCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAATGGCAAGAATTTT
GAGCCAGGAGGTGAAAAAGAAGGCCCCTGTGCTGGCCAAGCGACGGACGC
CGCTAATGAAAGACATGGAGAAGGAGAAGCGAGAGCGGCATCGCGCCAAG
GAGGCGGCGGAGGAAAAACGCGCTGCGCTGAATCACCAGCTGTATGTGCC
CGATCACAAGGATACGGAGCGGGAGAGGCAGTTGAGGCGAATTGCGACAC
GTGGGGTGGTGGCCTTGTTCAATGCCGTGACCAAAGCGAGGCAAGCGCAG
GAGGACGGCGGCGATGCTGCTACAGCGGAGGCAAGTTGGGCTGCGATCCA
GGATGATTACTTGATGACCGCCCCGAAGATTAACGACTATGGCTCCGAGG
AAGAGGAGGGAGATATGGAAGGGGAGGGCATGATGAGTGAGTCAGAAGCA
GAGTAGCCAAAGACATGTCCAAAAAAGACTTCTTGGAGATGCTGAAATCC
TCGACCTCCAAGACTGGCAGTAGTGCTGCCAACAGCAGCAGCAGCAGCAG
CAGCAGCAGCAATGGCAAGAATTTTGAGCCAGGAGGTGAAAAAGAAGGCC
CCTGTGCTGGCCAAGCGACGGACGCCGCTAATGAAAGACATGGAGAAGGA
GAAGCGAGAGCGGCATCGCGCCAAGGAGGCGGCGGAGGAAAAACGCGCTG
CGCTGAATCACCAGCTGTATGTGCCCGATCACAAGGATACGGAGCGGGAG
AGGCAGTTGAGGCGAATTGCGACACGTGGGGTGGTGGCCTTGTTCAATGC
CGTGACCAAAGCGAGGCAAGCGCAGGAGGACGGCGGCGATGCTGCTACAG
CGGAGGCAAGTTGGGCTGCGATCCAGGATGATTACTTGATGACCGCCCCG
AAGATTAACGACTATGGCTCCGAGGAAGAGGAGGGAGATATGGAAGGGGA
GGGCATGATGAGTGAGTCAGAAGCAGAGTAGCCAAAGACATGTCCAAAAA
AGACTTCTTGGAGATGCTGAAATCCTCGACCTCCAAGACTGGCAGTAGTG
CTGCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAATGGCAAGAATTTT
GAGCCAGGAGGTGAAAAAGAAGGCCCCTGTGCTGGCCAAGCGACGGACGC
CGCTAATGAAAGACATGGAGAAGGAGAAGCGAGAGCGGCATCGCGCCAAG
GAGGCGGCGGAGGAAAAACGCGCTGCGCTGAATCACCAGCTGTATGTGCC
CGATCACAAGGATACGGAGCGGGAGAGGCAGTTGAGGCGAATTGCGACAC
GTGGGGTGGTGGCCTTGTTCAATGCCGTGACCAAAGCGAGGCAAGCGCAG
GAGGACGGCGGCGATGCTGCTACAG
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Synonyms
Publications