jgi.p|Nanoce1779_2|527093, mRNA_4087 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|527093
Unique Name	mRNA_4087
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1179
Alignment location	scaffold_8:805038..806216 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	527179
Track	FilteredModels2
ProteinId	527093

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:805038..806216 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527093	gene_4087	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527093	mRNA_4087-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4087	CDS_4087	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:805038..806216+
coding sequence from alignment at scaffold_8:805038..806216+

mRNA sequence

>mRNA_4087 ID=mRNA_4087|Name=jgi.p|Nanoce1779_2|527093|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp
ATGTCTCGCCGCATCCGCGACGACATCCTTGTTCGGATCTACGCCGAGAA
CGACGCCCTTCTCTCCACCCCCGAGGGGGCCAACATCAAAGCCCAGCTCG
ACCAGCTCAAACAAGAACTATCAACTCCACAGACGTCCTCCCTCTCGCCA
ATTCAGAACGATGGTGGGCCTGACGTAAGCGTCTGGGGGAAGATCATGGC
CCCCTATGCGAAGAGCAACTGGTTGGACGCCCCGTGGTTAGTAACGGAGT
TCTATTTTTACCGTCGCATCGTCCAAATCTTTGGGTATTTTCAAACAGGC
TACGACCCGTTCAAGGATCAAAAACGCCTGGGGCTTGAAGGGGCGTTGGA
ATTAACACAGCAACTGGCGGCTCGTGCGGAGGAAGTGCACAAGGCAGGTG
AACCAGAGACCGGGCTCAGGTTCGCGCTCTTTGCCTCTCTTTGGGGCAAT
AAGATGGACTTGAGCCTGTGGCCTTCACAGTCGGATGCTGTAAATAAGGC
CCAGATCTTCGCCAACGTCTTGGAGGCGAGTTCGATTAATTTGCTCGCGG
ACGATTTTCCCGCTGTAGCAGCGCATTTGAAGGAAGGAGGGAAGGAGGGA
GGGAGGGTGGACATCATTGTGGATAATGCAGGATTCGAGCTGATCACGGA
TTTGCTACTGGCGGATGCGTTGCTTGTGCACGGGTTGGCCGCTAAGGTGG
TATTTCATACCAAGGGCCACCCTACCTTTGTCAGTGATGCGATGGACAAA
GACGTACAGGAGACAATCGAGTACCTCGCTGCTGCCGGCGTCTTTGCCGC
GAAAGACCGTTGGGTCTCGTATATGAAGACAGGTCAATGGGAATTACACG
CGCATAATTACTGGGCGCAGCCATTTCCGTTTTGGGAGCGTCCGAGAGAC
GTGAGTGAGGACTTGAAGAAGGCAAGGTTGGCGTTTGTGAAGGGAGATGC
CAATTACAGACGGTTGTTAGGGGATCGGGAGTGGGAGTTAGGCACGCCAT
TTGAGGAGGTGGCCTCGTATTTCCCCTGTCCAGTTGTAGCATTGAGGACG
TTGAAGGCGGAGTTGGGGTGTGGGATGGCGGAGGGGGAGGTAGGGAGGGC
AATTAAGGCGGATGCAAAAGATTGGATGGTGACGGGGAAGTATGGCGTGG
TTCAGTTTGTGGACCCGGAAAAGCTTTAG

protein sequence of jgi.p|Nanoce1779_2|527093

>mRNA_4087-protein ID=mRNA_4087-protein|Name=jgi.p|Nanoce1779_2|527093|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MSRRIRDDILVRIYAENDALLSTPEGANIKAQLDQLKQELSTPQTSSLSP
IQNDGGPDVSVWGKIMAPYAKSNWLDAPWLVTEFYFYRRIVQIFGYFQTG
YDPFKDQKRLGLEGALELTQQLAARAEEVHKAGEPETGLRFALFASLWGN
KMDLSLWPSQSDAVNKAQIFANVLEASSINLLADDFPAVAAHLKEGGKEG
GRVDIIVDNAGFELITDLLLADALLVHGLAAKVVFHTKGHPTFVSDAMDK
DVQETIEYLAAAGVFAAKDRWVSYMKTGQWELHAHNYWAQPFPFWERPRD
VSEDLKKARLAFVKGDANYRRLLGDREWELGTPFEEVASYFPCPVVALRT
LKAELGCGMAEGEVGRAIKADAKDWMVTGKYGVVQFVDPEKL*

mRNA from alignment at scaffold_8:805038..806216+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4087 ID=mRNA_4087|Name=jgi.p|Nanoce1779_2|527093|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp|location=Sequence derived from alignment at scaffold_8:805038..806216+ (Nannochloropsis oceanica)
ATGTCTCGCCGCATCCGCGACGACATCCTTGTTCGGATCTACGCCGAGAA
CGACGCCCTTCTCTCCACCCCCGAGGGGGCCAACATCAAAGCCCAGCTCG
ACCAGCTCAAACAAGAACTATCAACTCCACAGACGTCCTCCCTCTCGCCA
ATTCAGAACGATGGTGGGCCTGACGTAAGCGTCTGGGGGAAGATCATGGC
CCCCTATGCGAAGAGCAACTGGTTGGACGCCCCGTGGTTAGTAACGGAGT
TCTATTTTTACCGTCGCATCGTCCAAATCTTTGGGTATTTTCAAACAGGC
TACGACCCGTTCAAGGATCAAAAACGCCTGGGGCTTGAAGGGGCGTTGGA
ATTAACACAGCAACTGGCGGCTCGTGCGGAGGAAGTGCACAAGGCAGGTG
AACCAGAGACCGGGCTCAGGTTCGCGCTCTTTGCCTCTCTTTGGGGCAAT
AAGATGGACTTGAGCCTGTGGCCTTCACAGTCGGATGCTGTAAATAAGGC
CCAGATCTTCGCCAACGTCTTGGAGGCGAGTTCGATTAATTTGCTCGCGG
ACGATTTTCCCGCTGTAGCAGCGCATTTGAAGGAAGGAGGGAAGGAGGGA
GGGAGGGTGGACATCATTGTGGATAATGCAGGATTCGAGCTGATCACGGA
TTTGCTACTGGCGGATGCGTTGCTTGTGCACGGGTTGGCCGCTAAGGTGG
TATTTCATACCAAGGGCCACCCTACCTTTGTCAGTGATGCGATGGACAAA
GACGTACAGGAGACAATCGAGTACCTCGCTGCTGCCGGCGTCTTTGCCGC
GAAAGACCGTTGGGTCTCGTATATGAAGACAGGTCAATGGGAATTACACG
CGCATAATTACTGGGCGCAGCCATTTCCGTTTTGGGAGCGTCCGAGAGAC
GTGAGTGAGGACTTGAAGAAGGCAAGGTTGGCGTTTGTGAAGGGAGATGC
CAATTACAGACGGTTGTTAGGGGATCGGGAGTGGGAGTTAGGCACGCCAT
TTGAGGAGGTGGCCTCGTATTTCCCCTGTCCAGTTGTAGCATTGAGGACG
TTGAAGGCGGAGTTGGGGTGTGGGATGGCGGAGGGGGAGGTAGGGAGGGC
AATTAAGGCGGATGCAAAAGATTGGATGGTGACGGGGAAGTATGGCGTGG
TTCAGTTTGTGGACCCGGAAAAGCTTTAG

Coding sequence (CDS) from alignment at scaffold_8:805038..806216+

>mRNA_4087 ID=mRNA_4087|Name=jgi.p|Nanoce1779_2|527093|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_8:805038..806216+ (Nannochloropsis oceanica)
ATGTCTCGCCGCATCCGCGACGACATCCTTGTTCGGATCTACGCCGAGAA
CGACGCCCTTCTCTCCACCCCCGAGGGGGCCAACATCAAAGCCCAGCTCG
ACCAGCTCAAACAAGAACTATCAACTCCACAGACGTCCTCCCTCTCGCCA
ATTCAGAACGATGGTGGGCCTGACGTAAGCGTCTGGGGGAAGATCATGGC
CCCCTATGCGAAGAGCAACTGGTTGGACGCCCCGTGGTTAGTAACGGAGT
TCTATTTTTACCGTCGCATCGTCCAAATCTTTGGGTATTTTCAAACAGGC
TACGACCCGTTCAAGGATCAAAAACGCCTGGGGCTTGAAGGGGCGTTGGA
ATTAACACAGCAACTGGCGGCTCGTGCGGAGGAAGTGCACAAGGCAGGTG
AACCAGAGACCGGGCTCAGGTTCGCGCTCTTTGCCTCTCTTTGGGGCAAT
AAGATGGACTTGAGCCTGTGGCCTTCACAGTCGGATGCTGTAAATAAGGC
CCAGATCTTCGCCAACGTCTTGGAGGCGAGTTCGATTAATTTGCTCGCGG
ACGATTTTCCCGCTGTAGCAGCGCATTTGAAGGAAGGAGGGAAGGAGGGA
GGGAGGGTGGACATCATTGTGGATAATGCAGGATTCGAGCTGATCACGGA
TTTGCTACTGGCGGATGCGTTGCTTGTGCACGGGTTGGCCGCTAAGGTGG
TATTTCATACCAAGGGCCACCCTACCTTTGTCAGTGATGCGATGGACAAA
GACGTACAGGAGACAATCGAGTACCTCGCTGCTGCCGGCGTCTTTGCCGC
GAAAGACCGTTGGGTCTCGTATATGAAGACAGGTCAATGGGAATTACACG
CGCATAATTACTGGGCGCAGCCATTTCCGTTTTGGGAGCGTCCGAGAGAC
GTGAGTGAGGACTTGAAGAAGGCAAGGTTGGCGTTTGTGAAGGGAGATGC
CAATTACAGACGGTTGTTAGGGGATCGGGAGTGGGAGTTAGGCACGCCAT
TTGAGGAGGTGGCCTCGTATTTCCCCTGTCCAGTTGTAGCATTGAGGACG
TTGAAGGCGGAGTTGGGGTGTGGGATGGCGGAGGGGGAGGTAGGGAGGGC
AATTAAGGCGGATGCAAAAGATTGGATGGTGACGGGGAAGTATGGCGTGG
TTCAGTTTGTGGACCCGGAAAAGCTTTAG

Synonyms

Publications