jgi.p|Nanoce1779_2|586462, mRNA_4086 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586462
Unique Name	mRNA_4086
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1917
Alignment location	scaffold_8:802616..804532 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586548
Track	FilteredModels2
ProteinId	586462

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:802616..804532 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586462	gene_4086	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586462	mRNA_4086-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4086	CDS_4086	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:802616..804532+
coding sequence from alignment at scaffold_8:802616..804532+

mRNA sequence

>mRNA_4086 ID=mRNA_4086|Name=jgi.p|Nanoce1779_2|586462|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp
CAGCCACTCCGTCCCCGTCCTTCCCCCCCGCCAAAGAAAATAACAGGTGC
ATGTTTCCGTCGACATCCTCAATCAAGCGTAGCCTCAGCAACCTGTCCCC
AGGCAAAATCTTGCGCAAGGGCAGCAACAACAGCCTCAGCACCCAAGGCT
CCCCCCTTCGAAGCGTTTCCGGCTTCGACGACGCGAGCACCACCATGGAG
GCTACCACCATCTCTACCCCCACCAGCTCCACGAACACCATGACCGTGCC
TCCTTCCTCCTCAGCGCCTTTGGCCGCCACAACATACACTACAGCTGCTG
TGAGCAACTGCAAGAACAACCCTAATTGGCGCGAGCAAAATACCCTCTCC
TCCCTCCAAGTGGAAGTGATCGAGGTCAAAAATCTCCCCAGCACCTACCC
CTCCCCTCCTCCCTCCCTGTACGTCGAGCTCCAGCTAGGTGACCTCAAAC
TGCGTGCAAATGTCAACAAAAGTAGCACCAGCACCGCGGGCATCCGTCCG
GAAGCCGTTGTGTTCACCCAGAAAAAACTCGCGGGTCTCTACAAGGAAAG
CCTGAAATTTACTTTGATCAATAAAGACACCAAAGCGGTTATTGGCACCT
CCCAGCTGCCGGTGAAGAAATTGATGATTGGGAGGAAGTTCGAGGCTTTT
TTCAATCTGGCGGGAGCAGAAGGGGCGGGAGGAGCGGCTGTTCAGCTTCG
CCTGTCGCTGGAGCTGCTGGGGCCTCTCAGGAAGGAGTTCCGATTTTTGA
GTGATGTGGTGAGTAAGTACTATTCGACCGTCGACCGAACTTTGGATGGA
GCGGTGGCTGCGGGCCATGCGGCTCAGCCGTATGTCGCCAATAAGTGGAC
ATTGCCATTGTTGGTGCCCTTCGCGGTGCTGCTGCTGGCGGCGTCTCCGT
TCATGGGGGTGGCGCTCACTATTGGGTTGCCGGTGTTTTTGCCGTTGATT
CTGTTGGGTTTGATAGCAGGTTTGACGATGTTTATCGCCTCGATCATTTT
GGCCTTGTCCTCGAGGGCGGGTCGGGTGAAAGTCGAGGCGTTATTGGACC
CGGTCGTCCGGAAATTGACCCAGACGTCGACAGGACAGCAATTGTTGTAC
GAGACGGGCCCGAGACCTTCTCCATTGAGGGTGGCGAAGACGTTTGCGCC
TAAGGGGAAATGGGAGCGGCTGGTGACGTCGATCATTTTGGATGGGATTG
GATGCAGCTCTTATCTACTGCCTGTTTTAGGGGAGATGACTGATTTGGCC
TGGGCACCTTTGTTTGCTGTGTGTGTGCACGCGATGTACAGTGAGTCTAG
CCCCTATGCCCACTACGTCGGGTTGATCGAGGAGCTGTTGCCTTTCACTG
ATATTATCCCCACGGCGACCTTGGCATGGTTGAGGGAGAACGGCGCGGCC
TTGGCCAAGGACCTGCATGTAAGTGCAGTGAAGGGTCAGAGGCGAGGGCA
GGTGGCGTAGATGGCGATGAGGGCAGATACCAGCAGTGCCAGTCACAATC
GTAGGTAATAATCATAATAGAGAAAGGGGTCGGGATTGAGGCTATTACTT
TGTTTGCGTATGTGCCAATTCCAAAAAAGTGTTTTTCTATGTTGTTAGTT
ATCCATTTCCACCATTACGTCAAAGAATCAGTGCGTGGCATATGAACACC
GCCCCTGGGGGACAAGAGGGAGCAATGGCAGCCGCAGCAATCGAAAGAAA
CGAAAAAGAATGAGGAGTAAAGATAAAGGAAAAGACTACACGCCGCCAAC
CCATTTATTAAATGGAACGATTTTGAAAAGGCGAAAGACCAAGAAAAAGA
CCAAGTATTGGCAAGTATGACTAGATCAAGCAAAGAAGAGACAAGTTGAG
GGCTCAGATATGCACGATAGAGGAAGAGTAAAATCGACACAAGGAAACCA
CCCCAAAAAAAGAAAAA

protein sequence of jgi.p|Nanoce1779_2|586462

>mRNA_4086-protein ID=mRNA_4086-protein|Name=jgi.p|Nanoce1779_2|586462|organism=Nannochloropsis oceanica|type=polypeptide|length=470bp
MFPSTSSIKRSLSNLSPGKILRKGSNNSLSTQGSPLRSVSGFDDASTTME
ATTISTPTSSTNTMTVPPSSSAPLAATTYTTAAVSNCKNNPNWREQNTLS
SLQVEVIEVKNLPSTYPSPPPSLYVELQLGDLKLRANVNKSSTSTAGIRP
EAVVFTQKKLAGLYKESLKFTLINKDTKAVIGTSQLPVKKLMIGRKFEAF
FNLAGAEGAGGAAVQLRLSLELLGPLRKEFRFLSDVVSKYYSTVDRTLDG
AVAAGHAAQPYVANKWTLPLLVPFAVLLLAASPFMGVALTIGLPVFLPLI
LLGLIAGLTMFIASIILALSSRAGRVKVEALLDPVVRKLTQTSTGQQLLY
ETGPRPSPLRVAKTFAPKGKWERLVTSIILDGIGCSSYLLPVLGEMTDLA
WAPLFAVCVHAMYSESSPYAHYVGLIEELLPFTDIIPTATLAWLRENGAA
LAKDLHVSAVKGQRRGQVA*

mRNA from alignment at scaffold_8:802616..804532+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4086 ID=mRNA_4086|Name=jgi.p|Nanoce1779_2|586462|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp|location=Sequence derived from alignment at scaffold_8:802616..804532+ (Nannochloropsis oceanica)
CAGCCACTCCGTCCCCGTCCTTCCCCCCCGCCAAAGAAAATAACAGGTGC
ATGTTTCCGTCGACATCCTCAATCAAGCGTAGCCTCAGCAACCTGTCCCC
AGGCAAAATCTTGCGCAAGGGCAGCAACAACAGCCTCAGCACCCAAGGCT
CCCCCCTTCGAAGCGTTTCCGGCTTCGACGACGCGAGCACCACCATGGAG
GCTACCACCATCTCTACCCCCACCAGCTCCACGAACACCATGACCGTGCC
TCCTTCCTCCTCAGCGCCTTTGGCCGCCACAACATACACTACAGCTGCTG
TGAGCAACTGCAAGAACAACCCTAATTGGCGCGAGCAAAATACCCTCTCC
TCCCTCCAAGTGGAAGTGATCGAGGTCAAAAATCTCCCCAGCACCTACCC
CTCCCCTCCTCCCTCCCTGTACGTCGAGCTCCAGCTAGGTGACCTCAAAC
TGCGTGCAAATGTCAACAAAAGTAGCACCAGCACCGCGGGCATCCGTCCG
GAAGCCGTTGTGTTCACCCAGAAAAAACTCGCGGGTCTCTACAAGGAAAG
CCTGAAATTTACTTTGATCAATAAAGACACCAAAGCGGTTATTGGCACCT
CCCAGCTGCCGGTGAAGAAATTGATGATTGGGAGGAAGTTCGAGGCTTTT
TTCAATCTGGCGGGAGCAGAAGGGGCGGGAGGAGCGGCTGTTCAGCTTCG
CCTGTCGCTGGAGCTGCTGGGGCCTCTCAGGAAGGAGTTCCGATTTTTGA
GTGATGTGGTGAGTAAGTACTATTCGACCGTCGACCGAACTTTGGATGGA
GCGGTGGCTGCGGGCCATGCGGCTCAGCCGTATGTCGCCAATAAGTGGAC
ATTGCCATTGTTGGTGCCCTTCGCGGTGCTGCTGCTGGCGGCGTCTCCGT
TCATGGGGGTGGCGCTCACTATTGGGTTGCCGGTGTTTTTGCCGTTGATT
CTGTTGGGTTTGATAGCAGGTTTGACGATGTTTATCGCCTCGATCATTTT
GGCCTTGTCCTCGAGGGCGGGTCGGGTGAAAGTCGAGGCGTTATTGGACC
CGGTCGTCCGGAAATTGACCCAGACGTCGACAGGACAGCAATTGTTGTAC
GAGACGGGCCCGAGACCTTCTCCATTGAGGGTGGCGAAGACGTTTGCGCC
TAAGGGGAAATGGGAGCGGCTGGTGACGTCGATCATTTTGGATGGGATTG
GATGCAGCTCTTATCTACTGCCTGTTTTAGGGGAGATGACTGATTTGGCC
TGGGCACCTTTGTTTGCTGTGTGTGTGCACGCGATGTACAGTGAGTCTAG
CCCCTATGCCCACTACGTCGGGTTGATCGAGGAGCTGTTGCCTTTCACTG
ATATTATCCCCACGGCGACCTTGGCATGGTTGAGGGAGAACGGCGCGGCC
TTGGCCAAGGACCTGCATGTAAGTGCAGTGAAGGGTCAGAGGCGAGGGCA
GGTGGCGTAGATGGCGATGAGGGCAGATACCAGCAGTGCCAGTCACAATC
GTAGGTAATAATCATAATAGAGAAAGGGGTCGGGATTGAGGCTATTACTT
TGTTTGCGTATGTGCCAATTCCAAAAAAGTGTTTTTCTATGTTGTTAGTT
ATCCATTTCCACCATTACGTCAAAGAATCAGTGCGTGGCATATGAACACC
GCCCCTGGGGGACAAGAGGGAGCAATGGCAGCCGCAGCAATCGAAAGAAA
CGAAAAAGAATGAGGAGTAAAGATAAAGGAAAAGACTACACGCCGCCAAC
CCATTTATTAAATGGAACGATTTTGAAAAGGCGAAAGACCAAGAAAAAGA
CCAAGTATTGGCAAGTATGACTAGATCAAGCAAAGAAGAGACAAGTTGAG
GGCTCAGATATGCACGATAGAGGAAGAGTAAAATCGACACAAGGAAACCA
CCCCAAAAAAAGAAAAA

Coding sequence (CDS) from alignment at scaffold_8:802616..804532+

>mRNA_4086 ID=mRNA_4086|Name=jgi.p|Nanoce1779_2|586462|organism=Nannochloropsis oceanica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_8:802616..804532+ (Nannochloropsis oceanica)
ATGTTTCCGTCGACATCCTCAATCAAGCGTAGCCTCAGCAACCTGTCCCC
AGGCAAAATCTTGCGCAAGGGCAGCAACAACAGCCTCAGCACCCAAGGCT
CCCCCCTTCGAAGCGTTTCCGGCTTCGACGACGCGAGCACCACCATGGAG
GCTACCACCATCTCTACCCCCACCAGCTCCACGAACACCATGACCGTGCC
TCCTTCCTCCTCAGCGCCTTTGGCCGCCACAACATACACTACAGCTGCTG
TGAGCAACTGCAAGAACAACCCTAATTGGCGCGAGCAAAATACCCTCTCC
TCCCTCCAAGTGGAAGTGATCGAGGTCAAAAATCTCCCCAGCACCTACCC
CTCCCCTCCTCCCTCCCTGTACGTCGAGCTCCAGCTAGGTGACCTCAAAC
TGCGTGCAAATGTCAACAAAAGTAGCACCAGCACCGCGGGCATCCGTCCG
GAAGCCGTTGTGTTCACCCAGAAAAAACTCGCGGGTCTCTACAAGGAAAG
CCTGAAATTTACTTTGATCAATAAAGACACCAAAGCGGTTATTGGCACCT
CCCAGCTGCCGGTGAAGAAATTGATGATTGGGAGGAAGTTCGAGGCTTTT
TTCAATCTGGCGGGAGCAGAAGGGGCGGGAGGAGCGGCTGTTCAGCTTCG
CCTGTCGCTGGAGCTGCTGGGGCCTCTCAGGAAGGAGTTCCGATTTTTGA
GTGATGTGGTGAGTAAGTACTATTCGACCGTCGACCGAACTTTGGATGGA
GCGGTGGCTGCGGGCCATGCGGCTCAGCCGTATGTCGCCAATAAGTGGAC
ATTGCCATTGTTGGTGCCCTTCGCGGTGCTGCTGCTGGCGGCGTCTCCGT
TCATGGGGGTGGCGCTCACTATTGGGTTGCCGGTGTTTTTGCCGTTGATT
CTGTTGGGTTTGATAGCAGGTTTGACGATGTTTATCGCCTCGATCATTTT
GGCCTTGTCCTCGAGGGCGGGTCGGGTGAAAGTCGAGGCGTTATTGGACC
CGGTCGTCCGGAAATTGACCCAGACGTCGACAGGACAGCAATTGTTGTAC
GAGACGGGCCCGAGACCTTCTCCATTGAGGGTGGCGAAGACGTTTGCGCC
TAAGGGGAAATGGGAGCGGCTGGTGACGTCGATCATTTTGGATGGGATTG
GATGCAGCTCTTATCTACTGCCTGTTTTAGGGGAGATGACTGATTTGGCC
TGGGCACCTTTGTTTGCTGTGTGTGTGCACGCGATGTACAGTGAGTCTAG
CCCCTATGCCCACTACGTCGGGTTGATCGAGGAGCTGTTGCCTTTCACTG
ATATTATCCCCACGGCGACCTTGGCATGGTTGAGGGAGAACGGCGCGGCC
TTGGCCAAGGACCTGCATGTAAGTGCAGTGAAGGGTCAGAGGCGAGGGCA
GGTGGCGTAG

Synonyms

Publications