jgi.p|Nanoce1779_2|526880, mRNA_4084 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|526880
Unique NamemRNA_4084
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length429
Alignment locationscaffold_8:797366..797794 -

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Properties
Property NameValue
TranscriptId526966
TrackFilteredModels2
ProteinId526880
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:797366..797794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526880gene_4084Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4084CDS_4084Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526880mRNA_4084-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4084 ID=mRNA_4084|Name=jgi.p|Nanoce1779_2|526880|organism=Nannochloropsis oceanica|type=mRNA|length=429bp
ATGCGGGTGTTGAGTCATCGGAAGTTGGTGGATCGACACGGATGTTTGGT
GAAATGTTTGGGATTTCTGGATAAATATGTGCAGTTAAGGAGGGAACAGG
GGGTAGAAGAAGAGGTGCTGAAAGAAGAAGGGAGGGAGGGCGGTGTACCT
CCGGCAGTTACGGTGGCTGCCGCTGGAAAGGCGATGGAGCAGGAAGTGGT
GTTTAATATGGGGCGGGCGTTTCACCAGGCGGGATTATTGCACATGGCCG
TGCCATTCTATCAGGATGCTTTAAAGATGTTCGATGCGCATGGGGAGTTG
TGGAAGAGGGGGTTGGGAGACAAGGGGCATGTCACCCGGGAGGCTGCCTG
GAATCTGGTGGTGATTTATACGGGTTCCAAGAATAGGGAAATGGCGCGAG
GGTTGGTGGAGAGGTACTTGCGGGTGTGA
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protein sequence of jgi.p|Nanoce1779_2|526880

>mRNA_4084-protein ID=mRNA_4084-protein|Name=jgi.p|Nanoce1779_2|526880|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MRVLSHRKLVDRHGCLVKCLGFLDKYVQLRREQGVEEEVLKEEGREGGVP
PAVTVAAAGKAMEQEVVFNMGRAFHQAGLLHMAVPFYQDALKMFDAHGEL
WKRGLGDKGHVTREAAWNLVVIYTGSKNREMARGLVERYLRV*
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mRNA from alignment at scaffold_8:797366..797794-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4084 ID=mRNA_4084|Name=jgi.p|Nanoce1779_2|526880|organism=Nannochloropsis oceanica|type=mRNA|length=429bp|location=Sequence derived from alignment at scaffold_8:797366..797794- (Nannochloropsis oceanica)
ATGCGGGTGTTGAGTCATCGGAAGTTGGTGGATCGACACGGATGTTTGGT
GAAATGTTTGGGATTTCTGGATAAATATGTGCAGTTAAGGAGGGAACAGG
GGGTAGAAGAAGAGGTGCTGAAAGAAGAAGGGAGGGAGGGCGGTGTACCT
CCGGCAGTTACGGTGGCTGCCGCTGGAAAGGCGATGGAGCAGGAAGTGGT
GTTTAATATGGGGCGGGCGTTTCACCAGGCGGGATTATTGCACATGGCCG
TGCCATTCTATCAGGATGCTTTAAAGATGTTCGATGCGCATGGGGAGTTG
TGGAAGAGGGGGTTGGGAGACAAGGGGCATGTCACCCGGGAGGCTGCCTG
GAATCTGGTGGTGATTTATACGGGTTCCAAGAATAGGGAAATGGCGCGAG
GGTTGGTGGAGAGGTACTTGCGGGTGTGA
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Coding sequence (CDS) from alignment at scaffold_8:797366..797794-

>mRNA_4084 ID=mRNA_4084|Name=jgi.p|Nanoce1779_2|526880|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_8:797366..797794- (Nannochloropsis oceanica)
ATGCGGGTGTTGAGTCATCGGAAGTTGGTGGATCGACACGGATGTTTGGT
GAAATGTTTGGGATTTCTGGATAAATATGTGCAGTTAAGGAGGGAACAGG
GGGTAGAAGAAGAGGTGCTGAAAGAAGAAGGGAGGGAGGGCGGTGTACCT
CCGGCAGTTACGGTGGCTGCCGCTGGAAAGGCGATGGAGCAGGAAGTGGT
GTTTAATATGGGGCGGGCGTTTCACCAGGCGGGATTATTGCACATGGCCG
TGCCATTCTATCAGGATGCTTTAAAGATGTTCGATGCGCATGGGGAGTTG
TGGAAGAGGGGGTTGGGAGACAAGGGGCATGTCACCCGGGAGGCTGCCTG
GAATCTGGTGGTGATTTATACGGGTTCCAAGAATAGGGAAATGGCGCGAG
GGTTGGTGGAGAGGTACTTGCGGGTGTGA
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Synonyms
Publications