jgi.p|Nanoce1779_2|586451, mRNA_4082 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586451
Unique Name	mRNA_4082
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2920
Alignment location	scaffold_8:794091..797122 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586537
Track	FilteredModels2
ProteinId	586451

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:794091..797122 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586451	gene_4082	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586451	mRNA_4082-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4082	CDS_4082	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:794091..797122+
coding sequence from alignment at scaffold_8:794091..797122+

mRNA sequence

>mRNA_4082 ID=mRNA_4082|Name=jgi.p|Nanoce1779_2|586451|organism=Nannochloropsis oceanica|type=mRNA|length=2920bp
AACAGACTATGCGGACGACGCTGATGGAAAGCTTTTGGAGAGCCACTGTG
CTCCTGGTCATAGCACTTTTGGCCCCCACCACACAAGCCTTCTTCTTGCG
ACCTGCAACATCGACCTCTCCGTCCCAGCTGGCAGCCCAGTCTCACGATC
AAAGCAAGAATGACGTGCGGCATTTCTCCCTGACTTCTTTTCCACTTGCA
GGCCTCGGTTTTTTGGCGCTGAATGTTTTCGCCCCCTTCATAGCGAGCAC
CCCCGCGCATGCCCTCCCGCAAAAAGCGCCCGAAACCAATGCGCAAATGC
TGCTGATCGAAGCCCTTCCCAACAAGAACCCCTTGGTCTTGGACATGGCC
TCTTCCCTGTCTAAAATTACTACAGAGGGCAGTGGAAACATTCGGTCCAT
CGACGCCAAAGGCAGCAAAGGTATCAAGCCATGGCCGGAAGTTCAGCGGG
CGGCGCGATCTGCATCTGGCACTATTGCCGGTCGTGCCAAGGACCTCATC
AAGGGGGCCACGGACGAGAAAGCTGCTCAAGCCGTTCTCAATGATTTGAA
CATTCGCATCGACCAGCTCGGCGCGGCGGCAGACGCCCAAGATCGTGAAG
CAGCGGTCACGGCACAAGTCCAGGCTATGCTGCGGTTAGAGCAGCTGGGC
ACATTGCAAGTGGCCTCGATGCCTTTCCAACCCCCAACTGCAGAGTACCC
TGCCGTGCCCCAGCTACTGGGAAGAGCCGAAATCGAGATTACAACTCGTG
CAGGAAAGACGAGGCAGACTCGGCAGATGTACGCTGTGCTTGATGGATAT
AGTGCACCATTGTCGGCCGGACAGTTTGTGGACCTCGCGCAAAAAAAAGC
GTTTGATGACACGAAAGTTGTAGCGACGGACGAAAGCTCTGTGACTTTTA
CCGCGGATGCAGCCAAGGCCCCGAAGCGAACAGTACCCTTGGAAATTTTT
GTGGTAGGGGATGAGGAGCCTACCTATGGTGAAACCTTGGAGGAGCAGGG
TAGGTTTAAGGAGCGGACTGTGTTGCCATTCAATGCGTACGGCACCATTG
CGATGCTACACCCGCCTGATGACCCGAATGGAGGAGCAAATTCTTTTTTC
TTTTTGAAGGCCGATCCCAGCTATACGCCAGCGGGATTGAACACTTTGGA
TGGGGCGTTCAGTGTGATAGGGTATGTGGTGAAGGGGGAGGATGCCCTGG
ATGATTTGTTGGCGGGAGACGCGATTGAGAGCGTCAAGGTGTTGTCGGGG
TTGGAATTGTTGAAACAAAGCGGCAAATAATTTTCTTGCCGGATTGCAAT
TGAAATAAAACCGTATTTCGAAATGGATAAGCCATCATAATTTCGTTTTT
TGCTGGGGAGAGGGGGGTAGGTTTTATCGCCGAGACTGTTATTTCCGATG
TAGAGAAAAATAAAAAAATAAACCTATAACTTGGCTTCCTTGCAACACTC
CCACCACAAAACAGACCTAATCCCGCCACATGCAATGAAATCGTGGACGT
GCGCCGCCTGTACCTACACCAATGAGCGCGAATCCGCTTTTTGTCAAATC
TGTGCCTCAGGCCGCCCCAGCGTCTCGCATGCTCCCATCGATTTGCGCTC
CCCACCTTCGGCCGAAGGCAAGAAGGCAGACAACGCCAATACCAACAAGA
AGGCATTCAGCATAGCAGCCTCGCGAGCAGAACGGCAACAGGACGATAAC
GGCGATACTGGGATCGAAACTCAACCGGCAGAAGAGAGGCGTGCCAGCAA
CCCTTTTTCTTCCTTCGTCTACAACGGTGATGACGGCGAGGACGACACTA
CGATCTCCTCCGCCACGGTCCGGGCCTTTGCGTTCATGCACCCGCCGCAA
ATAGCTAAGCGACCTTTGAGCAAGCTGCTGAGCGACGGTTGTGGCGGCGG
CGCCGGTGAGGATGGGGCAGGGGACGAGGTCGCGCCGAAAAAGAAGACCA
AAAGAAACCAACACGCATGCGGTGAGGGGGCTCCTGAGGACTTTGAAAAG
GAAAGCGAAGACACCAAAAATGCGACTGTGCTAAAATGGAGGCGAATATT
GGGGCCTTTGGCCAAGCGAACGGGGACTGGAAACAGCGGTATTCAAGCGC
GAGGTGGTGAAGGAGGAGGAGAGGAAGTGAAGGCGGACACCGGCAAGAAT
GTCATAAACCAGACAAGAGCAAAAGAAGTAGGAGGAAAAGAAATGGAAGC
AGTTACCCCCGGAACTGACTCTATCGCTGACTATAATCCTAGCAATCTTA
ACCGCTTTCGCCTACTCGTCGCCGTCATTCTCTCATCGCGCACTCAAGAG
CAAATCGTGCGCCGATCCATCCAAACCATCGAGCAGTGCTACCCTGGCCG
ACAATTCTCCCCCCACTTTTTTGCCTCTTCCATTGAGTCCTGGGAGACCC
TTTCTGAAAAGTTGTCATTCGTACATTGCAATAAAGTCAAAAGCCGGCAC
ATCCTACAAACAGCCAATGTAATCGAGAAGGAATTTGGGGGCCATGTCCC
TAAGAGGAAGGAGCAGCTGTTAAAAATGGCAGGGATTGGACCGACCCTAG
CTCCGTTGCTGGAATTTTTGTTTGCGTGGCTTGACAAAGAAGAGAGAGAG
GACGAGGAGGATGGGAAAGAGGGAGGGAGGAAGCAGGAAACGCAGGAGGG
AGAAGCGCAAGTACCTCAGGGGCAGCAATATCAGCAGGAGCAGCAGCCCA
TGCCATCGGCGTTTCGAGGACATGGAGGAGACGTAAAATTGGAGAATGAA
GACGGTGAGATCATAATCGTGGGATAGTAAATATAGTGGAAGCAATGACT
TGTACAGCGAAGAAGGGGAGGAGGCAGGGGAGGGAGGAAATGGAGGGATG
CAGTCGACGAAATGTTTTGACATCAAAATAACGCGCGATGCGTCAGAAAG
AATGTAAATACCTATGCAGG

protein sequence of jgi.p|Nanoce1779_2|586451

>mRNA_4082-protein ID=mRNA_4082-protein|Name=jgi.p|Nanoce1779_2|586451|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MRTTLMESFWRATVLLVIALLAPTTQAFFLRPATSTSPSQLAAQSHDQSK
NDVRHFSLTSFPLAGLGFLALNVFAPFIASTPAHALPQKAPETNAQMLLI
EALPNKNPLVLDMASSLSKITTEGSGNIRSIDAKGSKGIKPWPEVQRAAR
SASGTIAGRAKDLIKGATDEKAAQAVLNDLNIRIDQLGAAADAQDREAAV
TAQVQAMLRLEQLGTLQVASMPFQPPTAEYPAVPQLLGRAEIEITTRAGK
TRQTRQMYAVLDGYSAPLSAGQFVDLAQKKAFDDTKVVATDESSVTFTAD
AAKAPKRTVPLEIFVVGDEEPTYGETLEEQGRFKERTVLPFNAYGTIAML
HPPDDPNGGANSFFFLKADPSYTPAGLNTLDGAFSVIGYVVKGEDALDDL
LAGDAIESVKVLSGLELLKQSGK*

mRNA from alignment at scaffold_8:794091..797122+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4082 ID=mRNA_4082|Name=jgi.p|Nanoce1779_2|586451|organism=Nannochloropsis oceanica|type=mRNA|length=3032bp|location=Sequence derived from alignment at scaffold_8:794091..797122+ (Nannochloropsis oceanica)
AACAGACTATGCGGACGACGCTGATGGAAAGCTTTTGGAGAGCCACTGTG
CTCCTGGTCATAGCACTTTTGGCCCCCACCACACAAGCCTTCTTCTTGCG
ACCTGCAACATCGACCTCTCCGTCCCAGCTGGCAGCCCAGTCTCACGATC
AAAGCAAGAATGACGTGCGGCATTTCTCCCTGACTTCTTTTCCACTTGCA
GGCCTCGGTTTTTTGGCGCTGAATGTTTTCGCCCCCTTCATAGCGAGCAC
CCCCGCGCATGCCCTCCCGCAAAAAGCGCCCGAAACCAATGCGCAAATGC
TGCTGATCGAAGCCCTTCCCAACAAGAACCCCTTGGTCTTGGACATGGCC
TCTTCCCTGTCTAAAATTACTACAGGTACGTTTCTTCCTTTCCTCCCTTC
TTGCCTCCCCACAATGAGCTCCCAAACAAGTACTTCGTCCTCCACGCCTG
CCTACACGAGTCCGCATCCAACTTATCCATCACACAGAGGGCAGTGGAAA
CATTCGGTCCATCGACGCCAAAGGCAGCAAAGGTATCAAGCCATGGCCGG
AAGTTCAGCGGGCGGCGCGATCTGCATCTGGCACTATTGCCGGTCGTGCC
AAGGACCTCATCAAGGGGGCCACGGACGAGAAAGCTGCTCAAGCCGTTCT
CAATGATTTGAACATTCGCATCGACCAGCTCGGCGCGGCGGCAGACGCCC
AAGATCGTGAAGCAGCGGTCACGGCACAAGTCCAGGCTATGCTGCGGTTA
GAGCAGCTGGGCACATTGCAAGTGGCCTCGATGCCTTTCCAACCCCCAAC
TGCAGAGTACCCTGCCGTGCCCCAGCTACTGGGAAGAGCCGAAATCGAGA
TTACAACTCGTGCAGGAAAGACGAGGCAGACTCGGCAGATGTACGCTGTG
CTTGATGGATATAGTGCACCATTGTCGGCCGGACAGTTTGTGGACCTCGC
GCAAAAAAAAGCGTTTGATGACACGAAAGTTGTAGCGACGGACGAAAGCT
CTGTGACTTTTACCGCGGATGCAGCCAAGGCCCCGAAGCGAACAGTACCC
TTGGAAATTTTTGTGGTAGGGGATGAGGAGCCTACCTATGGTGAAACCTT
GGAGGAGCAGGGTAGGTTTAAGGAGCGGACTGTGTTGCCATTCAATGCGT
ACGGCACCATTGCGATGCTACACCCGCCTGATGACCCGAATGGAGGAGCA
AATTCTTTTTTCTTTTTGAAGGCCGATCCCAGCTATACGCCAGCGGGATT
GAACACTTTGGATGGGGCGTTCAGTGTGATAGGGTATGTGGTGAAGGGGG
AGGATGCCCTGGATGATTTGTTGGCGGGAGACGCGATTGAGAGCGTCAAG
GTGTTGTCGGGGTTGGAATTGTTGAAACAAAGCGGCAAATAATTTTCTTG
CCGGATTGCAATTGAAATAAAACCGTATTTCGAAATGGATAAGCCATCAT
AATTTCGTTTTTTGCTGGGGAGAGGGGGGTAGGTTTTATCGCCGAGACTG
TTATTTCCGATGTAGAGAAAAATAAAAAAATAAACCTATAACTTGGCTTC
CTTGCAACACTCCCACCACAAAACAGACCTAATCCCGCCACATGCAATGA
AATCGTGGACGTGCGCCGCCTGTACCTACACCAATGAGCGCGAATCCGCT
TTTTGTCAAATCTGTGCCTCAGGCCGCCCCAGCGTCTCGCATGCTCCCAT
CGATTTGCGCTCCCCACCTTCGGCCGAAGGCAAGAAGGCAGACAACGCCA
ATACCAACAAGAAGGCATTCAGCATAGCAGCCTCGCGAGCAGAACGGCAA
CAGGACGATAACGGCGATACTGGGATCGAAACTCAACCGGCAGAAGAGAG
GCGTGCCAGCAACCCTTTTTCTTCCTTCGTCTACAACGGTGATGACGGCG
AGGACGACACTACGATCTCCTCCGCCACGGTCCGGGCCTTTGCGTTCATG
CACCCGCCGCAAATAGCTAAGCGACCTTTGAGCAAGCTGCTGAGCGACGG
TTGTGGCGGCGGCGCCGGTGAGGATGGGGCAGGGGACGAGGTCGCGCCGA
AAAAGAAGACCAAAAGAAACCAACACGCATGCGGTGAGGGGGCTCCTGAG
GACTTTGAAAAGGAAAGCGAAGACACCAAAAATGCGACTGTGCTAAAATG
GAGGCGAATATTGGGGCCTTTGGCCAAGCGAACGGGGACTGGAAACAGCG
GTATTCAAGCGCGAGGTGGTGAAGGAGGAGGAGAGGAAGTGAAGGCGGAC
ACCGGCAAGAATGTCATAAACCAGACAAGAGCAAAAGAAGTAGGAGGAAA
AGAAATGGAAGCAGTTACCCCCGGAACTGACTCTATCGCTGACTATAATC
CTAGCAATCTTAACCGCTTTCGCCTACTCGTCGCCGTCATTCTCTCATCG
CGCACTCAAGAGCAAATCGTGCGCCGATCCATCCAAACCATCGAGCAGTG
CTACCCTGGCCGACAATTCTCCCCCCACTTTTTTGCCTCTTCCATTGAGT
CCTGGGAGACCCTTTCTGAAAAGTTGTCATTCGTACATTGCAATAAAGTC
AAAAGCCGGCACATCCTACAAACAGCCAATGTAATCGAGAAGGAATTTGG
GGGCCATGTCCCTAAGAGGAAGGAGCAGCTGTTAAAAATGGCAGGGATTG
GACCGACCCTAGCTCCGTTGCTGGAATTTTTGTTTGCGTGGCTTGACAAA
GAAGAGAGAGAGGACGAGGAGGATGGGAAAGAGGGAGGGAGGAAGCAGGA
AACGCAGGAGGGAGAAGCGCAAGTACCTCAGGGGCAGCAATATCAGCAGG
AGCAGCAGCCCATGCCATCGGCGTTTCGAGGACATGGAGGAGACGTAAAA
TTGGAGAATGAAGACGGTGAGATCATAATCGTGGGATAGTAAATATAGTG
GAAGCAATGACTTGTACAGCGAAGAAGGGGAGGAGGCAGGGGAGGGAGGA
AATGGAGGGATGCAGTCGACGAAATGTTTTGACATCAAAATAACGCGCGA
TGCGTCAGAAAGAATGTAAATACCTATGCAGG

Coding sequence (CDS) from alignment at scaffold_8:794091..797122+

>mRNA_4082 ID=mRNA_4082|Name=jgi.p|Nanoce1779_2|586451|organism=Nannochloropsis oceanica|type=CDS|length=2544bp|location=Sequence derived from alignment at scaffold_8:794091..797122+ (Nannochloropsis oceanica)
ATGCGGACGACGCTGATGGAAAGCTTTTGGAGAGCCACTGTGCTCCTGGT
CATAGCACTTTTGGCCCCCACCACACAAGCCTTCTTCTTGCGACCTGCAA
CATCGACCTCTCCGTCCCAGCTGGCAGCCCAGTCTCACGATCAAAGCAAG
AATGACGTGCGGCATTTCTCCCTGACTTCTTTTCCACTTGCAGGCCTCGG
TTTTTTGGCGCTGAATGTTTTCGCCCCCTTCATAGCGAGCACCCCCGCGC
ATGCCCTCCCGCAAAAAGCGCCCGAAACCAATGCGCAAATGCTGCTGATC
GAAGCCCTTCCCAACAAGAACCCCTTGGTCTTGGACATGGCCTCTTCCCT
GTCTAAAATTACTACAGAGGGCAGTGGAAACATTCGGTCCATCGACGCCA
AAGGCAGCAAAGGTATCAAGCCATGGCCGGAAGTTCAGCGGGCGGCGCGA
TCTGCATCTGGCACTATTGCCGGTCGTGCCAAGGACCTCATCAAGGGGGC
CACGGACGAGAAAGCTGCTCAAGCCGTTCTCAATGATTTGAACATTCGCA
TCGACCAGCTCGGCGCGGCGGCAGACGCCCAAGATCGTGAAGCAGCGGTC
ACGGCACAAGTCCAGGCTATGCTGCGGTTAGAGCAGCTGGGCACATTGCA
AGTGGCCTCGATGCCTTTCCAACCCCCAACTGCAGAGTACCCTGCCGTGC
CCCAGCTACTGGGAAGAGCCGAAATCGAGATTACAACTCGTGCAGGAAAG
ACGAGGCAGACTCGGCAGATGTACGCTGTGCTTGATGGATATAGTGCACC
ATTGTCGGCCGGACAGTTTGTGGACCTCGCGCAAAAAAAAGCGTTTGATG
ACACGAAAGTTGTAGCGACGGACGAAAGCTCTGTGACTTTTACCGCGGAT
GCAGCCAAGGCCCCGAAGCGAACAGTACCCTTGGAAATTTTTGTGGTAGG
GGATGAGGAGCCTACCTATGGTGAAACCTTGGAGGAGCAGGGTAGGTTTA
AGGAGCGGACTGTGTTGCCATTCAATGCGTACGGCACCATTGCGATGCTA
CACCCGCCTGATGACCCGAATGGAGGAGCAAATTCTTTTTTCTTTTTGAA
GGCCGATCCCAGCTATACGCCAGCGGGATTGAACACTTTGGATGGGGCGT
TCAGTGTGATAGGGTATGTGGTGAAGGGGGAGGATGCCCTGGATGATTTG
TTGGCGGGAGACGCGATTGAGAGCGTCAAGGTGTTGTCGGGGTTGGAATT
GTTGAAACAAAGCGGCAAATAAATGCGGACGACGCTGATGGAAAGCTTTT
GGAGAGCCACTGTGCTCCTGGTCATAGCACTTTTGGCCCCCACCACACAA
GCCTTCTTCTTGCGACCTGCAACATCGACCTCTCCGTCCCAGCTGGCAGC
CCAGTCTCACGATCAAAGCAAGAATGACGTGCGGCATTTCTCCCTGACTT
CTTTTCCACTTGCAGGCCTCGGTTTTTTGGCGCTGAATGTTTTCGCCCCC
TTCATAGCGAGCACCCCCGCGCATGCCCTCCCGCAAAAAGCGCCCGAAAC
CAATGCGCAAATGCTGCTGATCGAAGCCCTTCCCAACAAGAACCCCTTGG
TCTTGGACATGGCCTCTTCCCTGTCTAAAATTACTACAGAGGGCAGTGGA
AACATTCGGTCCATCGACGCCAAAGGCAGCAAAGGTATCAAGCCATGGCC
GGAAGTTCAGCGGGCGGCGCGATCTGCATCTGGCACTATTGCCGGTCGTG
CCAAGGACCTCATCAAGGGGGCCACGGACGAGAAAGCTGCTCAAGCCGTT
CTCAATGATTTGAACATTCGCATCGACCAGCTCGGCGCGGCGGCAGACGC
CCAAGATCGTGAAGCAGCGGTCACGGCACAAGTCCAGGCTATGCTGCGGT
TAGAGCAGCTGGGCACATTGCAAGTGGCCTCGATGCCTTTCCAACCCCCA
ACTGCAGAGTACCCTGCCGTGCCCCAGCTACTGGGAAGAGCCGAAATCGA
GATTACAACTCGTGCAGGAAAGACGAGGCAGACTCGGCAGATGTACGCTG
TGCTTGATGGATATAGTGCACCATTGTCGGCCGGACAGTTTGTGGACCTC
GCGCAAAAAAAAGCGTTTGATGACACGAAAGTTGTAGCGACGGACGAAAG
CTCTGTGACTTTTACCGCGGATGCAGCCAAGGCCCCGAAGCGAACAGTAC
CCTTGGAAATTTTTGTGGTAGGGGATGAGGAGCCTACCTATGGTGAAACC
TTGGAGGAGCAGGGTAGGTTTAAGGAGCGGACTGTGTTGCCATTCAATGC
GTACGGCACCATTGCGATGCTACACCCGCCTGATGACCCGAATGGAGGAG
CAAATTCTTTTTTCTTTTTGAAGGCCGATCCCAGCTATACGCCAGCGGGA
TTGAACACTTTGGATGGGGCGTTCAGTGTGATAGGGTATGTGGTGAAGGG
GGAGGATGCCCTGGATGATTTGTTGGCGGGAGACGCGATTGAGAGCGTCA
AGGTGTTGTCGGGGTTGGAATTGTTGAAACAAAGCGGCAAATAA

Synonyms

Publications