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Properties
| Property Name | Value |
|---|
| TranscriptId | 424000 |
| Track | FilteredModels2 |
| ProteinId | 423914 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:789430..792023 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4081 ID=mRNA_4081|Name=jgi.p|Nanoce1779_2|423914|organism=Nannochloropsis oceanica|type=mRNA|length=2415bp
TACACAGTCCATGCAAGACATATATAGACACTCACGCAGTCTAGCAGTGA
CTTTTCTCTATGCCCCTACCTCACATTTTGCACCTTCCCTCATACTAGCA
TCATATCAGAACACGTAACTGGAGCGTGGGCCCAGAAATCGAAGCATGTC
CGCGACCCCATGACCCGCAGCAGCAGCAATAGCAGCAGCATACGGAGACC
TTAGGCTCAACCGCCACAGGTATTACTATCATGGCGAGCACGGGCTGGAG
CGTCACGTCCTGGTTTTCGTCATGGACCACCTCCTCTTCATCTCCTACTT
CCCAAGGCGGCGCCAGCCGCAGCATCAGCCGCAGCCGCAAGGACAAACAT
TGCCATACTTACCAGTCTCATCAGCACCACCCGCCTTGCAGCTTCCTTGA
CAGCAGTGGAGCCGATGGGAGGGGCAACAGCAGCGGCAGCAGCAACAGCA
GGAGTGGGCTACATAGCAGTGGGCCACACAGCCCTTACAAGCAGCACCCG
CAGCCTCGACATGGCAGCCGAAAGATTTTGTGTCGCTATGGCATGGGCTG
CACGCATGTGCTTGACCCCATCCATGCAGAACGATTTTGGCACCCACCCG
TCCCTGGGGAGGGGTTGCCATTGGCTACCTATGAAGGAAAAAATGGGGGT
TACGCGGCCGAGGCGAAGGGTGGGGATTATCACTTGATGCTTATGGAAGG
AGGGGGCTCGGCCTCCTTTCCGTGCCATGAATGTGGTTTATTCTTTGAAG
AATTAGGAGAGTTAAGGCTTCATTTGCAGAGTAAGACCGCTTGGTCGAAT
CTGAGTCTGGTGGGATGTAGGGTTAGTTGCTTGATGGACAGTAAAGAGTG
GCAAGAAGGGCTCGTAGTTGAGTACCTAGAGGCAACGGGGAAGCATCGCG
TGGTCTTTGAGCACATGGGCCAATCAAGGTGGATCTCCATGCTACGCTCC
GCCTTTTTTATAGTCCGTCGTCGGCCCCCTTTACCCTCCTCCGCTGAAAG
CAAAGACCCTTTCCCTTCCCCTTCCCCTCACAACCTCTCCTCCTCCCTCC
CTCCCTCCACCTGGACGTACACCGAAGACCTCTCCCTCGATTACGCACGC
GCACAAGCGATAATGCACGAGGCTTATGGCTACAAGATCCAAGAAACGGG
CCATAAAACCCAAGGCCACCTGTGTGTCACTGACTCCGACCGTGCCCTCG
CCGAGGATGCGCACTCCTCGCTCTTGTACGGCGAGCTCCTGCCACGTGGC
ATAAATAAAGCACTGGGTGCCTTGCGACTACGAGGAGCAGAGGCAGCAGT
CGTCTACGAGCTAGGGATGGGTATAGGGAAAGTAGCTATGCAGATCTTCC
TCCAATTTTCCTCCACATCAGAAGGAGGGGAGGGGAGGGGGAGCGAGCTC
AGTCCTGAGGAACCGGGGAGGGAGGGAGGGAGGACGAGGAAGAGAAAGAC
AAGGTTAAGGAGGGTGTATGGGGTAGAGTTGTCGTCGGCGCGCTTTGTGA
TGGCGGAGGCGGCAGCGCATCGCTTGTGTAAGGAACGGCCGGGGGAGTTT
CGAATGACGGAATGGGTGAAGGGGAGGAGGGTGGTGGTGGAGTCCATAGC
TGATGTAGGAAGGGGGGGGAGAGAAGGGGCAGTGCTTGAGATGGAGGTGG
GGAATTTACTCGAGGTCCAGGGGCTGGAGACTGCTGATATTGTCTTGCTG
GAGACGGATTTGGGGGCAGCGGTGCACCATGATTTGTGCATGCTGTTGAG
GCGGATGAAGAGTGGGGCGAGGGCGTTCACTTATTTGGATCTGAGGAAAA
TTTGGGGGGGTGGAGAAGGAGGGGGGAAGGAGGACAGGAGGCGGGGGGGC
ATTTTCCCGTTTCGGCAGTTGGAGATCAACCGGGTGGTGAGTGACAGGTA
CGCCACGAGCTGGAGTGTCAATAGAGGGCATCATTTCTACTTGTGGATGA
AGGTGTTGGAGTCTGGTAATGACGACCTGATTGTTCCGGAAGGACACCCG
GAGCCGAGTGAATGGGTGCCAGATGCCGGGTATGGAGGTGTGGGGGAGAG
AGGGAGGGAGGGAGAGAGGCTGCAATTTGAGTATTTACGGCGGCGGCCCC
AGCAACAGCAGCGGGGGTTACAGGGGAGGGAGCATGATCGTCGATGGCAA
CGACGGCCGACTGCTGGGTATCAATATTGGTGTCGACAGCATTCTACGCC
CTCTTACTCGTCTTATTCTCCCTCAAGGGAGGATGAGGGAGGAGAAAAAG
GAGGAGGAGGAGGAAGGGGAGGGAGGAGCAGTAGTGCAGAGAGAGTAAAC
GAAAGGTAGTGCGAAGGTGCGTGTGAAGACTAAACTAATCACGCGATGAG
CACAAGGCAGACAATATGGGGTTCTAACATTCGTGGGAGCCCGCCAGATT
CGCCAATTCGGTCGG back to topprotein sequence of jgi.p|Nanoce1779_2|423914 >mRNA_4081-protein ID=mRNA_4081-protein|Name=jgi.p|Nanoce1779_2|423914|organism=Nannochloropsis oceanica|type=polypeptide|length=693bp
MASTGWSVTSWFSSWTTSSSSPTSQGGASRSISRSRKDKHCHTYQSHQHH
PPCSFLDSSGADGRGNSSGSSNSRSGLHSSGPHSPYKQHPQPRHGSRKIL
CRYGMGCTHVLDPIHAERFWHPPVPGEGLPLATYEGKNGGYAAEAKGGDY
HLMLMEGGGSASFPCHECGLFFEELGELRLHLQSKTAWSNLSLVGCRVSC
LMDSKEWQEGLVVEYLEATGKHRVVFEHMGQSRWISMLRSAFFIVRRRPP
LPSSAESKDPFPSPSPHNLSSSLPPSTWTYTEDLSLDYARAQAIMHEAYG
YKIQETGHKTQGHLCVTDSDRALAEDAHSSLLYGELLPRGINKALGALRL
RGAEAAVVYELGMGIGKVAMQIFLQFSSTSEGGEGRGSELSPEEPGREGG
RTRKRKTRLRRVYGVELSSARFVMAEAAAHRLCKERPGEFRMTEWVKGRR
VVVESIADVGRGGREGAVLEMEVGNLLEVQGLETADIVLLETDLGAAVHH
DLCMLLRRMKSGARAFTYLDLRKIWGGGEGGGKEDRRRGGIFPFRQLEIN
RVVSDRYATSWSVNRGHHFYLWMKVLESGNDDLIVPEGHPEPSEWVPDAG
YGGVGERGREGERLQFEYLRRRPQQQQRGLQGREHDRRWQRRPTAGYQYW
CRQHSTPSYSSYSPSREDEGGEKGGGGGRGGRSSSAERVNER* back to topmRNA from alignment at scaffold_8:789430..792023- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4081 ID=mRNA_4081|Name=jgi.p|Nanoce1779_2|423914|organism=Nannochloropsis oceanica|type=mRNA|length=2594bp|location=Sequence derived from alignment at scaffold_8:789430..792023- (Nannochloropsis oceanica)
TACACAGTCCATGCAAGACATATATAGACACTCACGCAGTCTAGCAGTGA
CTTTTCTCTATGCCCCTACCTCACATTTTGCACCTTCCCTCATACTAGCA
TCATATCAGAACACGTAACTGGAGCGTGGGCCCAGAAATCGAAGCATGTC
CGCGACCCCATGACCCGCAGCAGCAGCAATAGCAGCAGCATACGGAGACC
TTAGGCTCAACCGCCACAGGTATTACTATCATGGCGAGCACGGGCTGGAG
CGTCACGTCCTGGTTTTCGTCATGGACCACCTCCTCTTCATCTCCTACTT
CCCAAGGCGGCGCCAGCCGCAGCATCAGCCGCAGCCGCAAGGACAAACAT
TGCCATACTTACCAGTCTCATCAGCACCACCCGCCTTGCAGCTTCCTTGA
CAGCAGTGGAGCCGATGGGAGGGGCAACAGCAGCGGCAGCAGCAACAGCA
GGAGTGGGCTACATAGCAGTGGGCCACACAGCCCTTACAAGCAGCACCCG
CAGCCTCGACATGGCAGCCGAAAGATTTTGTGTCGCTATGGCATGGGCTG
CACGCATGTGCTTGACCCCATCCATGCAGAACGATTTTGGCACCCACCCG
TCCCTGGGGAGGGGTTGCCATTGGCTACCTATGAAGGAAAAAATGGGGGT
TACGCGGCCGAGGCGAAGGGTGGGGATTATCACTTGATGCTTATGGAAGG
AGGGGGCTCGGCCTCCTTTCCGTGCCATGAATGTGGTTTATTCTTTGAAG
AATTAGGAGAGTTAAGGCTTCATTTGCAGAGTAAGACCGCTTGGTCGAAT
CTGAGTCTGGTGGGATGTAGGGTTAGTTGCTTGATGGACAGTAAAGAGTG
GCAAGAAGGGCTCGTAGTTGAGTACCTAGAGGCAACGGGGAAGCATCGCG
TGGTCTTTGAGCACATGGGCCAATCAAGGTGGATCTCCATGCTACGCTCC
GCCTTTTTTATAGTCCGTCGTCGGCCCCCTTTACCCTCCTCCGCTGAAAG
CAAAGACCCTTTCCCTTCCCCTTCCCCTCACAACCTCTCCTCCTCCCTCC
CTCCCTCCACCTGGACGTACACCGAAGACCTCTCCCTCGATTACGCACGC
GCACAAGCGATAATGCACGAGGCTTATGGCTACAAGATCCAAGAAACGGG
CCATAAAACCCAAGGCCACCTGTGTGTCACTGACTCCGACCGTGCCCTCG
CCGAGGATGCGCACTCCTCGCTCTTGTACGGCGAGCTCCTGCCACGTGGC
ATAAATAAAGCACTGGGTGCCTTGCGACTACGAGGAGCAGAGGCAGCAGT
CGTCTACGAGCTAGGGATGGGTATAGGGAAAGTAGCTATGCAGATCTTCC
TCCAATTTTCCTCCACATCAGAAGGAGGGGAGGGGAGGGGGAGCGAGCTC
AGTCCTGAGGAACCGGGGAGGGAGGGAGGGAGGACGAGGAAGAGAAAGAC
AAGGTTAAGGAGGGTGTATGGGGTAGAGTTGTCGTCGGCGCGCTTTGTGA
TGGCGGAGGCGGCAGCGCATCGCTTGTGTAAGGAACGGCCGGGGGAGTTT
CGAATGACGGAATGGGTGAAGGGGAGGAGGGTGGTGGTGGAGTCCATAGC
TGATGTAGGAAGGGGGGGGAGAGAAGGGGCAGTGCTTGAGATGGAGGTGG
GGAATTTACTCGAGGTCCAGGGGCTGGAGACTGCTGATATTGTCTTGCTG
GAGACGGATTTGGGGGCAGCGGTGCACCATGATTTGTGCATGCTGTTGAG
GCGGATGAAGAGTGGGGCGAGGGCGTTCACTTATTTGGATCTGAGGAAAA
TTTGGGGGGGTGGAGAAGGAGGGGGGAAGGAGGACAGGAGGCGGGGGGGC
ATTTTCCCGTTTCGGCAGTTGGAGATCAACCGGGTGGTGAGTGACAGGTA
CGCCACGAGCTGGAGTGTCAATAGAGGGCATCATTTCTACTTGTGGATGA
AGGTGTTGGAGTCTGGTAATGACGACCTGATTGTTCCGGAAGGACACCCG
GAGCCGAGTGAATGGGTGCCAGATGCCGGGTATGGAGGTGTGGGGGAGAG
AGGGAGGGAGGGAGAGAGGCTGCAATTTGAGTATTTACGGCGGCGGCCCC
AGCAACAGCAGCGGGGGTTACAGGGGAGGGAGCATGATCGTCGATGGCAA
CGACGGCCGACTGCTGGGTATCAATATTGGTGTCGACAGCATTCTACGCC
CTCTTACTCGTCTTATTCTCCCTCAAGGGAGGATGAGGGAGGAGAAAAAG
GAGGAGGAGGAGGAAGGGGAGGGAGGAGCAGTAGTGCAGAGAGGCCAGTC
TTATCGAGCTGGGGGAAGATGATGAAGAGGCTGACGGGGGCGGGAGGGGG
CGGGGGAGGAAATGGAGGGGGGAGCTCGCCGCTGTCGCCGGATTTGGTTT
CCCCGCGGCGGTGACGAGGACGTGGAGGAGAAGGTGCAGGAGTGACGGAG
GAGGAGGAGGAGGAGGAGAGAGAGTAAACGAAAGGTAGTGCGAAGGTGCG
TGTGAAGACTAAACTAATCACGCGATGAGCACAAGGCAGACAATATGGGG
TTCTAACATTCGTGGGAGCCCGCCAGATTCGCCAATTCGGTCGG back to topCoding sequence (CDS) from alignment at scaffold_8:789430..792023- >mRNA_4081 ID=mRNA_4081|Name=jgi.p|Nanoce1779_2|423914|organism=Nannochloropsis oceanica|type=CDS|length=4158bp|location=Sequence derived from alignment at scaffold_8:789430..792023- (Nannochloropsis oceanica)
AGTAAACGAAAGGTAGATGGCGAGCACGGGCTGGAGCGTCACGTCCTGGT
TTTCGTCATGGACCACCTCCTCTTCATCTCCTACTTCCCAAGGCGGCGCC
AGCCGCAGCATCAGCCGCAGCCGCAAGGACAAACATTGCCATACTTACCA
GTCTCATCAGCACCACCCGCCTTGCAGCTTCCTTGACAGCAGTGGAGCCG
ATGGGAGGGGCAACAGCAGCGGCAGCAGCAACAGCAGGAGTGGGCTACAT
AGCAGTGGGCCACACAGCCCTTACAAGCAGCACCCGCAGCCTCGACATGG
CAGCCGAAAGATTTTGTGTCGCTATGGCATGGGCTGCACGCATGTGCTTG
ACCCCATCCATGCAGAACGATTTTGGCACCCACCCGTCCCTGGGGAGGGG
TTGCCATTGGCTACCTATGAAGGAAAAAATGGGGGTTACGCGGCCGAGGC
GAAGGGTGGGGATTATCACTTGATGCTTATGGAAGGAGGGGGCTCGGCCT
CCTTTCCGTGCCATGAATGTGGTTTATTCTTTGAAGAATTAGGAGAGTTA
AGGCTTCATTTGCAGAGTAAGACCGCTTGGTCGAATCTGAGTCTGGTGGG
ATGTAGGGTTAGTTGCTTGATGGACAGTAAAGAGTGGCAAGAAGGGCTCG
TAGTTGAGTACCTAGAGGCAACGGGGAAGCATCGCGTGGTCTTTGAGCAC
ATGGGCCAATCAAGGTGGATCTCCATGCTACGCTCCGCCTTTTTTATAGT
CCGTCGTCGGCCCCCTTTACCCTCCTCCGCTGAAAGCAAAGACCCTTTCC
CTTCCCCTTCCCCTCACAACCTCTCCTCCTCCCTCCCTCCCTCCACCTGG
ACGTACACCGAAGACCTCTCCCTCGATTACGCACGCGCACAAGCGATAAT
GCACGAGGCTTATGGCTACAAGATCCAAGAAACGGGCCATAAAACCCAAG
GCCACCTGTGTGTCACTGACTCCGACCGTGCCCTCGCCGAGGATGCGCAC
TCCTCGCTCTTGTACGGCGAGCTCCTGCCACGTGGCATAAATAAAGCACT
GGGTGCCTTGCGACTACGAGGAGCAGAGGCAGCAGTCGTCTACGAGCTAG
GGATGGGTATAGGGAAAGTAGCTATGCAGATCTTCCTCCAATTTTCCTCC
ACATCAGAAGGAGGGGAGGGGAGGGGGAGCGAGCTCAGTCCTGAGGAACC
GGGGAGGGAGGGAGGGAGGACGAGGAAGAGAAAGACAAGGTTAAGGAGGG
TGTATGGGGTAGAGTTGTCGTCGGCGCGCTTTGTGATGGCGGAGGCGGCA
GCGCATCGCTTGTGTAAGGAACGGCCGGGGGAGTTTCGAATGACGGAATG
GGTGAAGGGGAGGAGGGTGGTGGTGGAGTCCATAGCTGATGTAGGAAGGG
GGGGGAGAGAAGGGGCAGTGCTTGAGATGGAGGTGGGGAATTTACTCGAG
GTCCAGGGGCTGGAGACTGCTGATATTGTCTTGCTGGAGACGGATTTGGG
GGCAGCGGTGCACCATGATTTGTGCATGCTGTTGAGGCGGATGAAGAGTG
GGGCGAGGGCGTTCACTTATTTGGATCTGAGGAAAATTTGGGGGGGTGGA
GAAGGAGGGGGGAAGGAGGACAGGAGGCGGGGGGGCATTTTCCCGTTTCG
GCAGTTGGAGATCAACCGGGTGGTGAGTGACAGGTACGCCACGAGCTGGA
GTGTCAATAGAGGGCATCATTTCTACTTGTGGATGAAGGTGTTGGAGTCT
GGTAATGACGACCTGATTGTTCCGGAAGGACACCCGGAGCCGAGTGAATG
GGTGCCAGATGCCGGGTATGGAGGTGTGGGGGAGAGAGGGAGGGAGGGAG
AGAGGCTGCAATTTGAGTATTTACGGCGGCGGCCCCAGCAACAGCAGCGG
GGGTTACAGGGGAGGGAGCATGATCGTCGATGGCAACGACGGCCGACTGC
TGGGTATCAATATTGGTGTCGACAGCATTCTACGCCCTCTTACTCGTCTT
ATTCTCCCTCAAGGGAGGATGAGGGAGGAGAAAAAGGAGGAGGAGGAGGA
AGGGGAGGGAGGAGCAGTAGTGCAGAGAGAGTAAACGAAAGGTAGATGGC
GAGCACGGGCTGGAGCGTCACGTCCTGGTTTTCGTCATGGACCACCTCCT
CTTCATCTCCTACTTCCCAAGGCGGCGCCAGCCGCAGCATCAGCCGCAGC
CGCAAGGACAAACATTGCCATACTTACCAGTCTCATCAGCACCACCCGCC
TTGCAGCTTCCTTGACAGCAGTGGAGCCGATGGGAGGGGCAACAGCAGCG
GCAGCAGCAACAGCAGGAGTGGGCTACATAGCAGTGGGCCACACAGCCCT
TACAAGCAGCACCCGCAGCCTCGACATGGCAGCCGAAAGATTTTGTGTCG
CTATGGCATGGGCTGCACGCATGTGCTTGACCCCATCCATGCAGAACGAT
TTTGGCACCCACCCGTCCCTGGGGAGGGGTTGCCATTGGCTACCTATGAA
GGAAAAAATGGGGGTTACGCGGCCGAGGCGAAGGGTGGGGATTATCACTT
GATGCTTATGGAAGGAGGGGGCTCGGCCTCCTTTCCGTGCCATGAATGTG
GTTTATTCTTTGAAGAATTAGGAGAGTTAAGGCTTCATTTGCAGAGTAAG
ACCGCTTGGTCGAATCTGAGTCTGGTGGGATGTAGGGTTAGTTGCTTGAT
GGACAGTAAAGAGTGGCAAGAAGGGCTCGTAGTTGAGTACCTAGAGGCAA
CGGGGAAGCATCGCGTGGTCTTTGAGCACATGGGCCAATCAAGGTGGATC
TCCATGCTACGCTCCGCCTTTTTTATAGTCCGTCGTCGGCCCCCTTTACC
CTCCTCCGCTGAAAGCAAAGACCCTTTCCCTTCCCCTTCCCCTCACAACC
TCTCCTCCTCCCTCCCTCCCTCCACCTGGACGTACACCGAAGACCTCTCC
CTCGATTACGCACGCGCACAAGCGATAATGCACGAGGCTTATGGCTACAA
GATCCAAGAAACGGGCCATAAAACCCAAGGCCACCTGTGTGTCACTGACT
CCGACCGTGCCCTCGCCGAGGATGCGCACTCCTCGCTCTTGTACGGCGAG
CTCCTGCCACGTGGCATAAATAAAGCACTGGGTGCCTTGCGACTACGAGG
AGCAGAGGCAGCAGTCGTCTACGAGCTAGGGATGGGTATAGGGAAAGTAG
CTATGCAGATCTTCCTCCAATTTTCCTCCACATCAGAAGGAGGGGAGGGG
AGGGGGAGCGAGCTCAGTCCTGAGGAACCGGGGAGGGAGGGAGGGAGGAC
GAGGAAGAGAAAGACAAGGTTAAGGAGGGTGTATGGGGTAGAGTTGTCGT
CGGCGCGCTTTGTGATGGCGGAGGCGGCAGCGCATCGCTTGTGTAAGGAA
CGGCCGGGGGAGTTTCGAATGACGGAATGGGTGAAGGGGAGGAGGGTGGT
GGTGGAGTCCATAGCTGATGTAGGAAGGGGGGGGAGAGAAGGGGCAGTGC
TTGAGATGGAGGTGGGGAATTTACTCGAGGTCCAGGGGCTGGAGACTGCT
GATATTGTCTTGCTGGAGACGGATTTGGGGGCAGCGGTGCACCATGATTT
GTGCATGCTGTTGAGGCGGATGAAGAGTGGGGCGAGGGCGTTCACTTATT
TGGATCTGAGGAAAATTTGGGGGGGTGGAGAAGGAGGGGGGAAGGAGGAC
AGGAGGCGGGGGGGCATTTTCCCGTTTCGGCAGTTGGAGATCAACCGGGT
GGTGAGTGACAGGTACGCCACGAGCTGGAGTGTCAATAGAGGGCATCATT
TCTACTTGTGGATGAAGGTGTTGGAGTCTGGTAATGACGACCTGATTGTT
CCGGAAGGACACCCGGAGCCGAGTGAATGGGTGCCAGATGCCGGGTATGG
AGGTGTGGGGGAGAGAGGGAGGGAGGGAGAGAGGCTGCAATTTGAGTATT
TACGGCGGCGGCCCCAGCAACAGCAGCGGGGGTTACAGGGGAGGGAGCAT
GATCGTCGATGGCAACGACGGCCGACTGCTGGGTATCAATATTGGTGTCG
ACAGCATTCTACGCCCTCTTACTCGTCTTATTCTCCCTCAAGGGAGGATG
AGGGAGGAGAAAAAGGAGGAGGAGGAGGAAGGGGAGGGAGGAGCAGTAGT
GCAGAGAG back to top
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