jgi.p|Nanoce1779_2|586442, mRNA_4080 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586442
Unique NamemRNA_4080
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1420
Alignment locationscaffold_8:787420..788839 +

Link to JBrowse

Properties
Property NameValue
TranscriptId586528
TrackFilteredModels2
ProteinId586442
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:787420..788839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586442gene_4080Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586442mRNA_4080-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4080CDS_4080Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4080 ID=mRNA_4080|Name=jgi.p|Nanoce1779_2|586442|organism=Nannochloropsis oceanica|type=mRNA|length=1420bp
TCCTTACTATGCATGAGTGTGCATGTGTGTTAGGATGATGGAGTAAGGTG
TGACCGAAGAGGTGGAGAGGCTGGTGAAGCGTTGGGCCAACACAAAGGGC
ATCGACAATGCTTCACTACGACAGACAGAGGAGGTCACAAAACCTGGCCA
AATCATGCAAACCACACAAACCCACGAACCAACAGGCATGTCCTCGTCCT
AACGCAGCAGCATGGAATCCTCCACATTCCCATCCTCGTCCGCCCCACGA
GCTCTGCCTCAGGAAACATTCTGGCCGCCGCCCTTGTCGTCCTCCAAATC
TCGCCGGTGTAATGCATCCCCGCGCTTCGAACAGCTGGGCAAAATAGGAG
AAGGTGCGTTCGGGGACGTCTACGCAGGCACAGACCACCTTAGTGATAAA
CTCGTAGCTATCAAGGAAGTACGACTGACCAACCTGAAACGACACGGATT
GCCCAAGCCGGCTTTGCGAGAGCTTCGGGCACTGCAACAATTGGAAGGGC
ACGAGCACGTGCTTCGCTTGATCGACGCGTTCCCACGGGGCGGGGCCATA
GCCTTGGTCCTGGAATACATGCCCAGCGATTTGGAAGTCATTATCCGAAC
CCGCACTTCTCTCCTTCCGGAAAACCATCTGAAATGCTATCTATGGATGC
TTCTCCAAGGCCTCTCCTTCCTCCACGCCAAGCACATCCTCCACCGCGAC
CTAAAGCCCTCCAACCTTCTCCTCTCAGCCCACGGCACCCTCAAAATTGG
AGACTTTGGGAGCGCACGCATTCATGTGAAACCCGCGCATGATGGAGAAG
AATATTCACATCCGGTTGGCACCAAATGGTACCGCGCCCCAGAGCTTTTA
TTCGGGGCAAGGCAGTATGGTCCTGCGATAGACCTGTGGGCTGTCGGTAC
AATTATGGGCGAGCTGAGTTGTCTTCGTCCGCTGTTTCCCGGACAGAATG
ACATGGATCAGTTGTCACGAGTTTTGCAAGTGTTGGGAACACCTACATTA
AAGTCGTTGCCTGCCTTGAAAGAGCTGCCTGATTATCATAAAGTGGCTTT
TCCGGACATGCCCCCGCAAGACCTCGGGAGGGTATTTCCTCGGATCCCGA
GGGAGGGCTTGAATCTGTTTAAGTCTTTCTTAAGTTTAGATCCGATGGGG
AGGCCTTCTGCGGAGGAGGCGTTAGTGGATTGTTGGTTTTATGTGGAGCC
GGAAATGTGTGAGAGGAGGGAGCTGATAGTGGTGGAAAGGGAGGTACCCG
TAAAACTAAGGGAGGTTTTGGGGAAGGGGAGGACGAAGGGGAAAGAGGAA
GTGGACGATGAGCTCTTAGGGAGGTTGGCCTGATTAGAATGTGAATAAAA
AGAAACGAGTAATAGAGGGGTTTCCTCTCTAAGCAATCTATGTAAAATAT
CGTGCAACTTTCTCAAGGCC
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protein sequence of jgi.p|Nanoce1779_2|586442

>mRNA_4080-protein ID=mRNA_4080-protein|Name=jgi.p|Nanoce1779_2|586442|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MESSTFPSSSAPRALPQETFWPPPLSSSKSRRCNASPRFEQLGKIGEGAF
GDVYAGTDHLSDKLVAIKEVRLTNLKRHGLPKPALRELRALQQLEGHEHV
LRLIDAFPRGGAIALVLEYMPSDLEVIIRTRTSLLPENHLKCYLWMLLQG
LSFLHAKHILHRDLKPSNLLLSAHGTLKIGDFGSARIHVKPAHDGEEYSH
PVGTKWYRAPELLFGARQYGPAIDLWAVGTIMGELSCLRPLFPGQNDMDQ
LSRVLQVLGTPTLKSLPALKELPDYHKVAFPDMPPQDLGRVFPRIPREGL
NLFKSFLSLDPMGRPSAEEALVDCWFYVEPEMCERRELIVVEREVPVKLR
EVLGKGRTKGKEEVDDELLGRLA*
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mRNA from alignment at scaffold_8:787420..788839+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4080 ID=mRNA_4080|Name=jgi.p|Nanoce1779_2|586442|organism=Nannochloropsis oceanica|type=mRNA|length=1420bp|location=Sequence derived from alignment at scaffold_8:787420..788839+ (Nannochloropsis oceanica)
TCCTTACTATGCATGAGTGTGCATGTGTGTTAGGATGATGGAGTAAGGTG
TGACCGAAGAGGTGGAGAGGCTGGTGAAGCGTTGGGCCAACACAAAGGGC
ATCGACAATGCTTCACTACGACAGACAGAGGAGGTCACAAAACCTGGCCA
AATCATGCAAACCACACAAACCCACGAACCAACAGGCATGTCCTCGTCCT
AACGCAGCAGCATGGAATCCTCCACATTCCCATCCTCGTCCGCCCCACGA
GCTCTGCCTCAGGAAACATTCTGGCCGCCGCCCTTGTCGTCCTCCAAATC
TCGCCGGTGTAATGCATCCCCGCGCTTCGAACAGCTGGGCAAAATAGGAG
AAGGTGCGTTCGGGGACGTCTACGCAGGCACAGACCACCTTAGTGATAAA
CTCGTAGCTATCAAGGAAGTACGACTGACCAACCTGAAACGACACGGATT
GCCCAAGCCGGCTTTGCGAGAGCTTCGGGCACTGCAACAATTGGAAGGGC
ACGAGCACGTGCTTCGCTTGATCGACGCGTTCCCACGGGGCGGGGCCATA
GCCTTGGTCCTGGAATACATGCCCAGCGATTTGGAAGTCATTATCCGAAC
CCGCACTTCTCTCCTTCCGGAAAACCATCTGAAATGCTATCTATGGATGC
TTCTCCAAGGCCTCTCCTTCCTCCACGCCAAGCACATCCTCCACCGCGAC
CTAAAGCCCTCCAACCTTCTCCTCTCAGCCCACGGCACCCTCAAAATTGG
AGACTTTGGGAGCGCACGCATTCATGTGAAACCCGCGCATGATGGAGAAG
AATATTCACATCCGGTTGGCACCAAATGGTACCGCGCCCCAGAGCTTTTA
TTCGGGGCAAGGCAGTATGGTCCTGCGATAGACCTGTGGGCTGTCGGTAC
AATTATGGGCGAGCTGAGTTGTCTTCGTCCGCTGTTTCCCGGACAGAATG
ACATGGATCAGTTGTCACGAGTTTTGCAAGTGTTGGGAACACCTACATTA
AAGTCGTTGCCTGCCTTGAAAGAGCTGCCTGATTATCATAAAGTGGCTTT
TCCGGACATGCCCCCGCAAGACCTCGGGAGGGTATTTCCTCGGATCCCGA
GGGAGGGCTTGAATCTGTTTAAGTCTTTCTTAAGTTTAGATCCGATGGGG
AGGCCTTCTGCGGAGGAGGCGTTAGTGGATTGTTGGTTTTATGTGGAGCC
GGAAATGTGTGAGAGGAGGGAGCTGATAGTGGTGGAAAGGGAGGTACCCG
TAAAACTAAGGGAGGTTTTGGGGAAGGGGAGGACGAAGGGGAAAGAGGAA
GTGGACGATGAGCTCTTAGGGAGGTTGGCCTGATTAGAATGTGAATAAAA
AGAAACGAGTAATAGAGGGGTTTCCTCTCTAAGCAATCTATGTAAAATAT
CGTGCAACTTTCTCAAGGCC
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Coding sequence (CDS) from alignment at scaffold_8:787420..788839+

>mRNA_4080 ID=mRNA_4080|Name=jgi.p|Nanoce1779_2|586442|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_8:787420..788839+ (Nannochloropsis oceanica)
ATGGAATCCTCCACATTCCCATCCTCGTCCGCCCCACGAGCTCTGCCTCA
GGAAACATTCTGGCCGCCGCCCTTGTCGTCCTCCAAATCTCGCCGGTGTA
ATGCATCCCCGCGCTTCGAACAGCTGGGCAAAATAGGAGAAGGTGCGTTC
GGGGACGTCTACGCAGGCACAGACCACCTTAGTGATAAACTCGTAGCTAT
CAAGGAAGTACGACTGACCAACCTGAAACGACACGGATTGCCCAAGCCGG
CTTTGCGAGAGCTTCGGGCACTGCAACAATTGGAAGGGCACGAGCACGTG
CTTCGCTTGATCGACGCGTTCCCACGGGGCGGGGCCATAGCCTTGGTCCT
GGAATACATGCCCAGCGATTTGGAAGTCATTATCCGAACCCGCACTTCTC
TCCTTCCGGAAAACCATCTGAAATGCTATCTATGGATGCTTCTCCAAGGC
CTCTCCTTCCTCCACGCCAAGCACATCCTCCACCGCGACCTAAAGCCCTC
CAACCTTCTCCTCTCAGCCCACGGCACCCTCAAAATTGGAGACTTTGGGA
GCGCACGCATTCATGTGAAACCCGCGCATGATGGAGAAGAATATTCACAT
CCGGTTGGCACCAAATGGTACCGCGCCCCAGAGCTTTTATTCGGGGCAAG
GCAGTATGGTCCTGCGATAGACCTGTGGGCTGTCGGTACAATTATGGGCG
AGCTGAGTTGTCTTCGTCCGCTGTTTCCCGGACAGAATGACATGGATCAG
TTGTCACGAGTTTTGCAAGTGTTGGGAACACCTACATTAAAGTCGTTGCC
TGCCTTGAAAGAGCTGCCTGATTATCATAAAGTGGCTTTTCCGGACATGC
CCCCGCAAGACCTCGGGAGGGTATTTCCTCGGATCCCGAGGGAGGGCTTG
AATCTGTTTAAGTCTTTCTTAAGTTTAGATCCGATGGGGAGGCCTTCTGC
GGAGGAGGCGTTAGTGGATTGTTGGTTTTATGTGGAGCCGGAAATGTGTG
AGAGGAGGGAGCTGATAGTGGTGGAAAGGGAGGTACCCGTAAAACTAAGG
GAGGTTTTGGGGAAGGGGAGGACGAAGGGGAAAGAGGAAGTGGACGATGA
GCTCTTAGGGAGGTTGGCCTGA
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Synonyms
Publications