|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 540914 |
| Track | FilteredModels2 |
| ProteinId | 540828 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:785411..787444 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4079 ID=mRNA_4079|Name=jgi.p|Nanoce1779_2|540828|organism=Nannochloropsis oceanica|type=mRNA|length=1406bp
CATGCACACTCATGCATAGTAAGGAGCGACACACGCGCTGCAACACAGCG
TGTCCGGGGCACCCTTCGCCGACACTGCTTCACAAAGCGATCAGAAAGAA
ACGGCCTCACCTCGCCTCCTCAACTCGACACAACCCTTTCACAGTGTTAA
AGAGATGGCACATCCTCTCGAGCCAACTCCACCGCCTACGGCCAGGGCCA
CATCGTCGGCCATGGAAACGCAGATGCTCCAGGTGCTGCGGTCCACATTT
GGCCTGAACGAGTTCAGGGAAATGCAAATGGACGTCATTTCCCACGTCCT
CCACGGCGGCTCCGGTCTGGTCCTCTTCCCCACGGGCGGGGGCAAGTCTC
TCTGCTACCAGCTCCCTGCCCTCCTTTCCGACGGTGTTACCATTGTTATA
AGCCCCCTCATCTCCCTGATGCAAGACCAAGTTACTGCCCTGCAGGCCCG
AGGGGTAAAAGCACGCAACTTCAGCTCCGCCCAAGACGCCTCCACCATTA
ATCAGACCCTTGCTGAACTCGCAGCGCTCCCCAAGCCTCATGTCAAGATC
CTCTATATCACCCCTGAGCGGCTCTCCTCCCCGTCCTTTGCCCCCATTCT
CCAGCAGCTCCACGCTCGTGGCCTCCTGGCCGCATTTGCTGTCGACGAGG
CCCACTGTATTTCTCAGTGGGGCCACGATTTCCGTCCGGCCTACCGCCAG
CTGGGAATGATTCGGGCCGCATTCCCTTCCGTCCCCTGCCTTGCCCTCAC
CGCCACCGCCACTCCATCTGTGCAACGAGACATTCAGATGCAGCTCTCCC
TCCCTCCCTCCGTCGTCTTCAAGCGCTCCTTCGATCGTCCCAATCTGTTT
TATCGCGTGGAGTACAAGTCTTTATTGAGAGACATTCATGAAACTGCGTC
AAGAAAAGCAGCCGAGTCAGAGAGGGAGGGAAGGAGGGAGGGAGGTAGCG
CCATAGTCTACTGTTGGAAGACGGCGGACTGTGACCTGCTGGCCGCCGAG
CTGACCAAGAGGGGCATTCCCACTCTGGCATATCATGGCAAGATGAAGGA
CGGCCAAAGGAAAGAGGTGCAGGGGTTGTTCTCCGAGGGGCTGGTCAAGG
TGGTGACGGCGTCGTGTGCGTTTGGCATGGGCATCGATAAGGCCGATGTC
CGGCTGGTGGTGCATTGGACGGTCCCCAACACCCTTGAAGCTTTCTACCA
AGAAAGTGGGCGCGCTGGCCGTGACGGGAAGCCAGCTTTCTCTCTCCTCT
TTTACTCGGACCACGACCTCAGCTCTCGCCAGTACATACTTGCTAAAGGG
CTGGACGAGGGAGAGAGGGAGGGAGGCAGGGGCGAAAGCAAAGAGAAGGA
GGTGGAACGGAAGGGGGAAGAGTTGATGAAGGTCAGGGAATATGCGCTGG
AGGGGG back to topprotein sequence of jgi.p|Nanoce1779_2|540828 >mRNA_4079-protein ID=mRNA_4079-protein|Name=jgi.p|Nanoce1779_2|540828|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MAHPLEPTPPPTARATSSAMETQMLQVLRSTFGLNEFREMQMDVISHVLH
GGSGLVLFPTGGGKSLCYQLPALLSDGVTIVISPLISLMQDQVTALQARG
VKARNFSSAQDASTINQTLAELAALPKPHVKILYITPERLSSPSFAPILQ
QLHARGLLAAFAVDEAHCISQWGHDFRPAYRQLGMIRAAFPSVPCLALTA
TATPSVQRDIQMQLSLPPSVVFKRSFDRPNLFYRVEYKSLLRDIHETASR
KAAESEREGRREGGSAIVYCWKTADCDLLAAELTKRGIPTLAYHGKMKDG
QRKEVQGLFSEGLVKVVTASCAFGMGIDKADVRLVVHWTVPNTLEAFYQE
SGRAGRDGKPAFSLLFYSDHDLSSRQYILAKGLDEGEREGGRGESKEKEV
ERKGEELMKVREYALEG back to topmRNA from alignment at scaffold_8:785411..787444- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4079 ID=mRNA_4079|Name=jgi.p|Nanoce1779_2|540828|organism=Nannochloropsis oceanica|type=mRNA|length=2034bp|location=Sequence derived from alignment at scaffold_8:785411..787444- (Nannochloropsis oceanica)
CATGCACACTCATGCATAGTAAGGAGCGACACACGCGCTGCAACACAGCG
TGTCCGGGGCACCCTTCGCCGACACTGCTTCACAAAGCGATCAGAAAGAA
ACGGCCTCACCTCGCCTCCTCAACTCGACACAACCCTTTCACAGTGTTAA
AGAGATGGCACATCCTCTCGAGCCAACTCCACCGCCTACGGCCAGGGCCA
CATCGTCGGCCATGGAAACGCAGATGCTCCAGGTGCTGCGGTCCACATTT
GGCCTGAACGAGTTCAGGGAAATGCAAATGGACGTCATTTCCCACGTCCT
CCACGGCGGCTCCGGTCTGGTCCTCTTCCCCACGGGCGGGGGCAAGTCTC
TCTGCTACCAGCTCCCTGCCCTCCTTTCCGACGGTGTTACCATTGTTATA
AGCCCCCTCATCTCCCTGATGCAAGACCAAGTTACTGCCCTGCAGGCCCG
AGGGGTAAAAGCACGCAACTTCAGCTCCGCCCAAGACGCCTCCACCATTA
ATCAGACCCTTGCTGAACTCGCAGCGCTCCCCAAGCCTCATGTCAAGATC
CTCTATATCACCCCTGAGCGGCTCTCCTCCCCGTCCTTTGCCCCCATTCT
CCAGCAGCTCCACGCTCGTGGCCTCCTGGCCGCATTTGCTGTCGACGAGG
CCCACTGTATTTCTCAGGTACGCTCCTTTCTTAAGCGCCTCCTATTTTCG
GCTGTTTCGTCCCTTTTATTTTTGGAAGCGGATTTGGATCAACACAAATG
TCCTTCTTCATGCCACTTTTCAGTTATATTTCCTTATCCCTCCCTCCCTC
CCTCCCTTCCTCACCTTTTCCAGTGGGGCCACGATTTCCGTCCGGCCTAC
CGCCAGCTGGGAATGATTCGGGCCGCATTCCCTTCCGTCCCCTGCCTTGC
CCTCACCGCCACCGCCACTCCATCTGTGCAACGAGACATTCAGATGCAGC
TCTCCCTCCCTCCCTCCGTCGTCTTCAAGCGCTCCTTCGATCGTCCCAAT
CTGTTTTATCGCGTGGAGTACAAGTCTTTATTGAGAGACATTCATGGTGT
GCTTGCCTCAGCGATAAAAAGCGAGATCGGCCCATTCGTGTGTCAGGCCA
CAAAGAAGGGGGAAGCGGGAGGAGGAAGGCAAAAAGGCAAAGGTTTAGGA
GGAGGAGGAGGAGGAGGGGCGTCGTTCTCGTCGTCCTCGATGGCGCTAGC
AGGAGAAGGACGAGGGGGAGGGACCCTTAATTCTTTTTTCCAATCACGGA
TTGGAGCACCAAAAGCAGCGGCAGCAGCAGCAGCAACAACAACCTCAAAA
GGAGAAACTGCGTCAAGAAAAGCAGCCGAGTCAGAGAGGGAGGGAAGGAG
GGAGGGAGGTAGCGCCATAGTCTACTGTTGGAAGACGGCGGACTGTGACC
TGCTGGCCGCCGAGCTGACCAAGAGGGGCATTCCCACTCTGGCATATCAT
GGCAAGATGAAGGACGGCCAAAGGAAAGAGGTGCAGGGGTTGTTCTCCGA
GGGGCTGGTCAAGGTGGTGACGGCGTCGTGTGCGTTTGGCATGGGCATCG
ATAAGGCCGATGTCCGGCTGGTGGTGCATTGGACGGTAAGCTCGCACATG
CCTCCCTTCATCCCCTGCCTCCCACTCCTTCGTTTTCCGTTTCTTTGTTT
GTTGCTGTCTCATCCGGGCATCCATCTTGTGCCTCCAACTCTCTCCCTCC
TCTCTACCTCTGTCGATAATCACCTCACACGGACATTCCTTTCTTTCTTT
CTCCCTGTCTACACACATACCCTTTTTCCCCCCTCTCGCCCTCGTCCAGG
TCCCCAACACCCTTGAAGCTTTCTACCAAGAAAGTGGGCGCGCTGGCCGT
GACGGGAAGCCAGCTTTCTCTCTCCTCTTTTACTCGGACCACGACCTCAG
CTCTCGCCAGTACATACTTGCTAAAGGGCTGGACGAGGGAGAGAGGGAGG
GAGGCAGGGGCGAAAGCAAAGAGAAGGAGGTGGAACGGAAGGGGGAAGAG
TTGATGAAGGTCAGGGAATATGCGCTGGAGGGGG back to topCoding sequence (CDS) from alignment at scaffold_8:785411..787444- >mRNA_4079 ID=mRNA_4079|Name=jgi.p|Nanoce1779_2|540828|organism=Nannochloropsis oceanica|type=CDS|length=5004bp|location=Sequence derived from alignment at scaffold_8:785411..787444- (Nannochloropsis oceanica)
GTCCCCAACACCCTTGAAGCTTTCTACCAAGAAAGTGGGCGCGCTGGCCG
TGACGGGAAGCCAGCTTTCTCTCTCCTCTTTTACTCGGACCACGACCTCA
GCTCTCGCCAGTACATACTTGCTAAAGGGCTGGACGAGGGAGAGAGGGAG
GGAGGCAGGGGCGAAAGCAAAGAGAAGGAGGTGGAACGGAAGGGGGAAGA
GTTGATGAAGGTCAGGGAATATGCGCTGGAGGGGAAACTGCGTCAAGAAA
AGCAGCCGAGTCAGAGAGGGAGGGAAGGAGGGAGGGAGGTAGCGCCATAG
TCTACTGTTGGAAGACGGCGGACTGTGACCTGCTGGCCGCCGAGCTGACC
AAGAGGGGCATTCCCACTCTGGCATATCATGGCAAGATGAAGGACGGCCA
AAGGAAAGAGGTGCAGGGGTTGTTCTCCGAGGGGCTGGTCAAGGTGGTGA
CGGCGTCGTGTGCGTTTGGCATGGGCATCGATAAGGCCGATGTCCGGCTG
GTGGTGCATTGGACGTGGGGCCACGATTTCCGTCCGGCCTACCGCCAGCT
GGGAATGATTCGGGCCGCATTCCCTTCCGTCCCCTGCCTTGCCCTCACCG
CCACCGCCACTCCATCTGTGCAACGAGACATTCAGATGCAGCTCTCCCTC
CCTCCCTCCGTCGTCTTCAAGCGCTCCTTCGATCGTCCCAATCTGTTTTA
TCGCGTGGAGTACAAGTCTTTATTGAGAGACATTCATGATGGCACATCCT
CTCGAGCCAACTCCACCGCCTACGGCCAGGGCCACATCGTCGGCCATGGA
AACGCAGATGCTCCAGGTGCTGCGGTCCACATTTGGCCTGAACGAGTTCA
GGGAAATGCAAATGGACGTCATTTCCCACGTCCTCCACGGCGGCTCCGGT
CTGGTCCTCTTCCCCACGGGCGGGGGCAAGTCTCTCTGCTACCAGCTCCC
TGCCCTCCTTTCCGACGGTGTTACCATTGTTATAAGCCCCCTCATCTCCC
TGATGCAAGACCAAGTTACTGCCCTGCAGGCCCGAGGGGTAAAAGCACGC
AACTTCAGCTCCGCCCAAGACGCCTCCACCATTAATCAGACCCTTGCTGA
ACTCGCAGCGCTCCCCAAGCCTCATGTCAAGATCCTCTATATCACCCCTG
AGCGGCTCTCCTCCCCGTCCTTTGCCCCCATTCTCCAGCAGCTCCACGCT
CGTGGCCTCCTGGCCGCATTTGCTGTCGACGAGGCCCACTGTATTTCTCA
GGTCCCCAACACCCTTGAAGCTTTCTACCAAGAAAGTGGGCGCGCTGGCC
GTGACGGGAAGCCAGCTTTCTCTCTCCTCTTTTACTCGGACCACGACCTC
AGCTCTCGCCAGTACATACTTGCTAAAGGGCTGGACGAGGGAGAGAGGGA
GGGAGGCAGGGGCGAAAGCAAAGAGAAGGAGGTGGAACGGAAGGGGGAAG
AGTTGATGAAGGTCAGGGAATATGCGCTGGAGGGGAAACTGCGTCAAGAA
AAGCAGCCGAGTCAGAGAGGGAGGGAAGGAGGGAGGGAGGTAGCGCCATA
GTCTACTGTTGGAAGACGGCGGACTGTGACCTGCTGGCCGCCGAGCTGAC
CAAGAGGGGCATTCCCACTCTGGCATATCATGGCAAGATGAAGGACGGCC
AAAGGAAAGAGGTGCAGGGGTTGTTCTCCGAGGGGCTGGTCAAGGTGGTG
ACGGCGTCGTGTGCGTTTGGCATGGGCATCGATAAGGCCGATGTCCGGCT
GGTGGTGCATTGGACGTGGGGCCACGATTTCCGTCCGGCCTACCGCCAGC
TGGGAATGATTCGGGCCGCATTCCCTTCCGTCCCCTGCCTTGCCCTCACC
GCCACCGCCACTCCATCTGTGCAACGAGACATTCAGATGCAGCTCTCCCT
CCCTCCCTCCGTCGTCTTCAAGCGCTCCTTCGATCGTCCCAATCTGTTTT
ATCGCGTGGAGTACAAGTCTTTATTGAGAGACATTCATGATGGCACATCC
TCTCGAGCCAACTCCACCGCCTACGGCCAGGGCCACATCGTCGGCCATGG
AAACGCAGATGCTCCAGGTGCTGCGGTCCACATTTGGCCTGAACGAGTTC
AGGGAAATGCAAATGGACGTCATTTCCCACGTCCTCCACGGCGGCTCCGG
TCTGGTCCTCTTCCCCACGGGCGGGGGCAAGTCTCTCTGCTACCAGCTCC
CTGCCCTCCTTTCCGACGGTGTTACCATTGTTATAAGCCCCCTCATCTCC
CTGATGCAAGACCAAGTTACTGCCCTGCAGGCCCGAGGGGTAAAAGCACG
CAACTTCAGCTCCGCCCAAGACGCCTCCACCATTAATCAGACCCTTGCTG
AACTCGCAGCGCTCCCCAAGCCTCATGTCAAGATCCTCTATATCACCCCT
GAGCGGCTCTCCTCCCCGTCCTTTGCCCCCATTCTCCAGCAGCTCCACGC
TCGTGGCCTCCTGGCCGCATTTGCTGTCGACGAGGCCCACTGTATTTCTC
AGGTCCCCAACACCCTTGAAGCTTTCTACCAAGAAAGTGGGCGCGCTGGC
CGTGACGGGAAGCCAGCTTTCTCTCTCCTCTTTTACTCGGACCACGACCT
CAGCTCTCGCCAGTACATACTTGCTAAAGGGCTGGACGAGGGAGAGAGGG
AGGGAGGCAGGGGCGAAAGCAAAGAGAAGGAGGTGGAACGGAAGGGGGAA
GAGTTGATGAAGGTCAGGGAATATGCGCTGGAGGGGAAACTGCGTCAAGA
AAAGCAGCCGAGTCAGAGAGGGAGGGAAGGAGGGAGGGAGGTAGCGCCAT
AGTCTACTGTTGGAAGACGGCGGACTGTGACCTGCTGGCCGCCGAGCTGA
CCAAGAGGGGCATTCCCACTCTGGCATATCATGGCAAGATGAAGGACGGC
CAAAGGAAAGAGGTGCAGGGGTTGTTCTCCGAGGGGCTGGTCAAGGTGGT
GACGGCGTCGTGTGCGTTTGGCATGGGCATCGATAAGGCCGATGTCCGGC
TGGTGGTGCATTGGACGTGGGGCCACGATTTCCGTCCGGCCTACCGCCAG
CTGGGAATGATTCGGGCCGCATTCCCTTCCGTCCCCTGCCTTGCCCTCAC
CGCCACCGCCACTCCATCTGTGCAACGAGACATTCAGATGCAGCTCTCCC
TCCCTCCCTCCGTCGTCTTCAAGCGCTCCTTCGATCGTCCCAATCTGTTT
TATCGCGTGGAGTACAAGTCTTTATTGAGAGACATTCATGATGGCACATC
CTCTCGAGCCAACTCCACCGCCTACGGCCAGGGCCACATCGTCGGCCATG
GAAACGCAGATGCTCCAGGTGCTGCGGTCCACATTTGGCCTGAACGAGTT
CAGGGAAATGCAAATGGACGTCATTTCCCACGTCCTCCACGGCGGCTCCG
GTCTGGTCCTCTTCCCCACGGGCGGGGGCAAGTCTCTCTGCTACCAGCTC
CCTGCCCTCCTTTCCGACGGTGTTACCATTGTTATAAGCCCCCTCATCTC
CCTGATGCAAGACCAAGTTACTGCCCTGCAGGCCCGAGGGGTAAAAGCAC
GCAACTTCAGCTCCGCCCAAGACGCCTCCACCATTAATCAGACCCTTGCT
GAACTCGCAGCGCTCCCCAAGCCTCATGTCAAGATCCTCTATATCACCCC
TGAGCGGCTCTCCTCCCCGTCCTTTGCCCCCATTCTCCAGCAGCTCCACG
CTCGTGGCCTCCTGGCCGCATTTGCTGTCGACGAGGCCCACTGTATTTCT
CAGGTCCCCAACACCCTTGAAGCTTTCTACCAAGAAAGTGGGCGCGCTGG
CCGTGACGGGAAGCCAGCTTTCTCTCTCCTCTTTTACTCGGACCACGACC
TCAGCTCTCGCCAGTACATACTTGCTAAAGGGCTGGACGAGGGAGAGAGG
GAGGGAGGCAGGGGCGAAAGCAAAGAGAAGGAGGTGGAACGGAAGGGGGA
AGAGTTGATGAAGGTCAGGGAATATGCGCTGGAGGGGAAACTGCGTCAAG
AAAAGCAGCCGAGTCAGAGAGGGAGGGAAGGAGGGAGGGAGGTAGCGCCA
TAGTCTACTGTTGGAAGACGGCGGACTGTGACCTGCTGGCCGCCGAGCTG
ACCAAGAGGGGCATTCCCACTCTGGCATATCATGGCAAGATGAAGGACGG
CCAAAGGAAAGAGGTGCAGGGGTTGTTCTCCGAGGGGCTGGTCAAGGTGG
TGACGGCGTCGTGTGCGTTTGGCATGGGCATCGATAAGGCCGATGTCCGG
CTGGTGGTGCATTGGACGTGGGGCCACGATTTCCGTCCGGCCTACCGCCA
GCTGGGAATGATTCGGGCCGCATTCCCTTCCGTCCCCTGCCTTGCCCTCA
CCGCCACCGCCACTCCATCTGTGCAACGAGACATTCAGATGCAGCTCTCC
CTCCCTCCCTCCGTCGTCTTCAAGCGCTCCTTCGATCGTCCCAATCTGTT
TTATCGCGTGGAGTACAAGTCTTTATTGAGAGACATTCATGATGGCACAT
CCTCTCGAGCCAACTCCACCGCCTACGGCCAGGGCCACATCGTCGGCCAT
GGAAACGCAGATGCTCCAGGTGCTGCGGTCCACATTTGGCCTGAACGAGT
TCAGGGAAATGCAAATGGACGTCATTTCCCACGTCCTCCACGGCGGCTCC
GGTCTGGTCCTCTTCCCCACGGGCGGGGGCAAGTCTCTCTGCTACCAGCT
CCCTGCCCTCCTTTCCGACGGTGTTACCATTGTTATAAGCCCCCTCATCT
CCCTGATGCAAGACCAAGTTACTGCCCTGCAGGCCCGAGGGGTAAAAGCA
CGCAACTTCAGCTCCGCCCAAGACGCCTCCACCATTAATCAGACCCTTGC
TGAACTCGCAGCGCTCCCCAAGCCTCATGTCAAGATCCTCTATATCACCC
CTGAGCGGCTCTCCTCCCCGTCCTTTGCCCCCATTCTCCAGCAGCTCCAC
GCTCGTGGCCTCCTGGCCGCATTTGCTGTCGACGAGGCCCACTGTATTTC
TCAG back to top
|