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Properties
| Property Name | Value |
|---|
| TranscriptId | 586519 |
| Track | FilteredModels2 |
| ProteinId | 586433 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:781516..784131 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4078 ID=mRNA_4078|Name=jgi.p|Nanoce1779_2|586433|organism=Nannochloropsis oceanica|type=mRNA|length=2463bp
TTTGGCGAGCGGGGGCTGTCGCGGGGCTGCGCTGGCCCAGCACATGGCCA
CAACAACACATTTTATTCCTCTCCTACAACTACACAAGCACAGGATCGAA
ACAAAAAGTGGGCAACCAATGCTGCCGCTGGCATGGAGCCGACGGTACGG
CCCCCTGGCCTTCCCTCCCCTCTTTTCCCTTCTTTGGCAACCAGCCCGCC
TGGTAGCCTCCCCTTTGCCGTTACTGCGCACACACGCCTTGTCGTGCCTC
CGTCAAGGCCAAGGACGCAGTGGTGTGGCTGATGTCGCTACAAACATACG
TGCACCAACTTTGTATCGCTATAGACATGCTTTCTCTGTGATTGTTCCAA
TCTTCCTATTCCTGCTAGGCTCTCCTACGTACGCCTTTCGAGCTGTCCCC
ATGCGGGCACGCGTTAGCTCTGAGTCCATTTCGTCCTCGACAATGGTGGA
AAGAAATTTGAAAAAATTTCGGGCAGTCACACGCTCAGACTCTGGGCTTT
GTTTGTTGAGCCTAACAGGCTCCTCATCGTCAAGTCCGGCCGCCTACCCT
ACCACCTCTGAGATATCCTCCAATCCTGTTGCTGCCGCGGAGAAGGACCC
ACCCAGTTTATTGACCCCTCTTGCAGATAAAGGATTGTTACTTTGTGATT
TGGCGACTAGGCATCAATTATTTGATAATCAGGAGGAATCTATCACCCCT
AGTGAGTTGGTGGCATGCCTAAAAGCGCCGGAATCAATGGACGGTACGGA
GCCAGACCCGGAGAGCTTCCGGGCCATCTTATTCGACTTTGTGACGACCA
AGCCCGAGGCCTTTAGTTTACAAGATCTGGCCACGCTCATCCAAGCGTCA
TCAACTTCACTCAATCAGCAATCAGCCATCCTTCCATCTCTCCTCGACCT
CCTTCTCGACACCACTACCCTCCGCATGCGTGCAAACCCCCCTAACTCCC
TCCTTCCAACCACCTGGGTCCACCTGGCCCTCGCTTCCAACTTCCTGCCT
CCTATCCTCAAAGCCCGTCCTGCCTCTCATCGTTTTCTACAACAACTGAC
CACAAATCTCTCTTCGCGTCTATCTGCCCTCTCTCCATCTGATCTTGTCC
TGGCCATAAGGGTATGGCCCAGAGAGCCAGCCGACTTGGACGATTTCAGC
TGTAAGCTCATCCAGGCGATCTTGCTGCAGAGTATCAACAGCCTGCATGC
CTTCGATCCACCTGAATTAACCCAGCTGATACAGGGGCTGAGAAGACCAA
TGACGCCCACACGGTTATCAATTTTGGAAGCACTCGACGAAACAGGGCAA
GAAACCCCCGATCTGAACAGCAGACAACGGCTATTCAAAGCAGCAATCAA
AACAATTGCTCGTCGTCACATCCACCAACTCTCCCCCCGCGAGCTCTCCG
TATTCATACAAGCCTGCGTCACGGACCTGAGCTTCGCAGATTGGTCGAAA
GACCTCGGAGTCGCCTTCCCTCGTACCTATACCACTGCAGCCTTGAAGCA
TATCCCACACATGGCTCCCCTCCAAATCCTCCCCACTCTCTCCGCCTTCC
TCTTCCTCCGCTCCGTCTTCGATTTCTCCCCTGGCAGTGAAATCTACCAT
GGGCTAGCCAAGATGGCAATAGAAAAGGTGGAGGAGGGAGGAAAGGAGGA
AGGTGAAGAGGATCCTTCTGTCCTCTTGTCCCTCCTTCAGACATTCGCTT
TTTTTGCCAGCCCTGAGTATGATCCCGGGGAGGTGTTGGAAGTTTTGACT
CGCAAGGTATTGAGACATCTGCACTCCTTCTCTCCCTTCTCCCTTCGGTG
TCTGGTGGAAACGTTGGCGTTGCCGAGCCATTCGTACGTGCCTTCTTTCG
GGATGCTCACAGAGATATCACATCACGCAGCGAATCAGCTCCTTAGACAG
GATGGTGCTGCTGCTCCTGCTGCAGCTGCTGCTATTACTGTTGCGAATGG
TTCGCCGGTTATAGTTGACTATGTCTACATTGTACGGAGTCTGGCCATGA
TTGTTGTGAGGAAAGGGGCTGCAAGCTGGGGCTTACGGACGGGCATGGCA
AAGGTTGGGCAGAAGGAGGAGGAGATTGAGGGGTGGAGGGAAGAGAGGGA
GAAAGGAGAGAAAGAAGGAGGGGAAGGACCGGCGGCAGAGGGGATGTTTA
GAAAGATGCAGGAGTTTTCCCGGTATTTTTAGAAGGATAGGAGCGGCGTG
TGTGTGTGTGTGTGTGTTTGTGAGGAAGGTTTGACCATGAACTCCTGTAT
AGGCATCGGGGCATTTATGTGCATTGGCCGTGTGTAAGTGATTAAGGTTT
GGACGCAAATATGTAGGATATAAGGCTGACCGGTCAGAGACAAGAAAGAT
GGGAGTAGCAGAGTGGGAGCTGATCAATTTAAGAAGGGAGCCACACACAA
ACACCAAGCGACGACGAGGATGACGGGCAGCAAATGCCCGACGGAAAAAA
TATTGACCAAATA back to topprotein sequence of jgi.p|Nanoce1779_2|586433 >mRNA_4078-protein ID=mRNA_4078-protein|Name=jgi.p|Nanoce1779_2|586433|organism=Nannochloropsis oceanica|type=polypeptide|length=713bp
MATTTHFIPLLQLHKHRIETKSGQPMLPLAWSRRYGPLAFPPLFSLLWQP
ARLVASPLPLLRTHALSCLRQGQGRSGVADVATNIRAPTLYRYRHAFSVI
VPIFLFLLGSPTYAFRAVPMRARVSSESISSSTMVERNLKKFRAVTRSDS
GLCLLSLTGSSSSSPAAYPTTSEISSNPVAAAEKDPPSLLTPLADKGLLL
CDLATRHQLFDNQEESITPSELVACLKAPESMDGTEPDPESFRAILFDFV
TTKPEAFSLQDLATLIQASSTSLNQQSAILPSLLDLLLDTTTLRMRANPP
NSLLPTTWVHLALASNFLPPILKARPASHRFLQQLTTNLSSRLSALSPSD
LVLAIRVWPREPADLDDFSCKLIQAILLQSINSLHAFDPPELTQLIQGLR
RPMTPTRLSILEALDETGQETPDLNSRQRLFKAAIKTIARRHIHQLSPRE
LSVFIQACVTDLSFADWSKDLGVAFPRTYTTAALKHIPHMAPLQILPTLS
AFLFLRSVFDFSPGSEIYHGLAKMAIEKVEEGGKEEGEEDPSVLLSLLQT
FAFFASPEYDPGEVLEVLTRKVLRHLHSFSPFSLRCLVETLALPSHSYVP
SFGMLTEISHHAANQLLRQDGAAAPAAAAAITVANGSPVIVDYVYIVRSL
AMIVVRKGAASWGLRTGMAKVGQKEEEIEGWREEREKGEKEGGEGPAAEG
MFRKMQEFSRYF* back to topmRNA from alignment at scaffold_8:781516..784131+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4078 ID=mRNA_4078|Name=jgi.p|Nanoce1779_2|586433|organism=Nannochloropsis oceanica|type=mRNA|length=2616bp|location=Sequence derived from alignment at scaffold_8:781516..784131+ (Nannochloropsis oceanica)
TTTGGCGAGCGGGGGCTGTCGCGGGGCTGCGCTGGCCCAGCACATGGCCA
CAACAACACATTTTATTCCTCTCCTACAACTACACAAGCACAGGATCGAA
ACAAAAAGTGGGCAACCAATGCTGCCGCTGGCATGGAGCCGACGGTACGG
CCCCCTGGCCTTCCCTCCCCTCTTTTCCCTTCTTTGGCAACCAGCCCGCC
TGGTAGCCTCCCCTTTGCCGTTACTGCGCACACACGCCTTGTCGTGCCTC
CGTCAAGGCCAAGGACGCAGTGGTGTGGCTGATGTCGCTACAAACATACG
TGCACCAACTTTGTATCGCTATAGACATGCTTTCTCTGTGATTGTTCCAA
TCTTCCTATTCCTGCTAGGCTCTCCTACGTACGCCTTTCGAGCTGTCCCC
ATGCGGGCACGCGTTAGCTCTGAGTCCATTTCGTCCTCGACAATGGTGGA
AAGAAATTTGAAAAAATTTCGGGCAGTCACACGCTCAGACTCTGGGCTTT
GTTTGTTGAGCCTAACAGGCTCCTCATCGTCAAGTCCGGCCGCCTACCCT
ACCACCTCTGAGATATCCTCCAATCCTGTTGCTGCCGCGGAGAAGGACCC
ACCCAGTTTATTGACCCCTCTTGCAGATAAAGGATTGTTACTTTGTGATT
TGGCGACTAGGCATCAATTATTTGATAATCAGGAGGAATCTATCACCCCT
AGTGAGTTGGTGGCATGCCTAAAAGCGCCGGAATCAATGGACGGTACGGA
GCCAGACCCGGAGAGCTTCCGGGTACGTTAGGGTCGGTGTTTGACCCAAA
TTTTAATGATGATTAAAATTGCTTTCACCACTTATGTCTTCAGGACTGCA
TTAATCTTTTAAATGTCTTCGTCACAAATTCTCCTACTGTTACCTCCATC
CATCCCTTCCCACCACCACCCACAGGCCATCTTATTCGACTTTGTGACGA
CCAAGCCCGAGGCCTTTAGTTTACAAGATCTGGCCACGCTCATCCAAGCG
TCATCAACTTCACTCAATCAGCAATCAGCCATCCTTCCATCTCTCCTCGA
CCTCCTTCTCGACACCACTACCCTCCGCATGCGTGCAAACCCCCCTAACT
CCCTCCTTCCAACCACCTGGGTCCACCTGGCCCTCGCTTCCAACTTCCTG
CCTCCTATCCTCAAAGCCCGTCCTGCCTCTCATCGTTTTCTACAACAACT
GACCACAAATCTCTCTTCGCGTCTATCTGCCCTCTCTCCATCTGATCTTG
TCCTGGCCATAAGGGTATGGCCCAGAGAGCCAGCCGACTTGGACGATTTC
AGCTGTAAGCTCATCCAGGCGATCTTGCTGCAGAGTATCAACAGCCTGCA
TGCCTTCGATCCACCTGAATTAACCCAGCTGATACAGGGGCTGAGAAGAC
CAATGACGCCCACACGGTTATCAATTTTGGAAGCACTCGACGAAACAGGG
CAAGAAACCCCCGATCTGAACAGCAGACAACGGCTATTCAAAGCAGCAAT
CAAAACAATTGCTCGTCGTCACATCCACCAACTCTCCCCCCGCGAGCTCT
CCGTATTCATACAAGCCTGCGTCACGGACCTGAGCTTCGCAGATTGGTCG
AAAGACCTCGGAGTCGCCTTCCCTCGTACCTATACCACTGCAGCCTTGAA
GCATATCCCACACATGGCTCCCCTCCAAATCCTCCCCACTCTCTCCGCCT
TCCTCTTCCTCCGCTCCGTCTTCGATTTCTCCCCTGGCAGTGAAATCTAC
CATGGGCTAGCCAAGATGGCAATAGAAAAGGTGGAGGAGGGAGGAAAGGA
GGAAGGTGAAGAGGATCCTTCTGTCCTCTTGTCCCTCCTTCAGACATTCG
CTTTTTTTGCCAGCCCTGAGTATGATCCCGGGGAGGTGTTGGAAGTTTTG
ACTCGCAAGGTATTGAGACATCTGCACTCCTTCTCTCCCTTCTCCCTTCG
GTGTCTGGTGGAAACGTTGGCGTTGCCGAGCCATTCGTACGTGCCTTCTT
TCGGGATGCTCACAGAGATATCACATCACGCAGCGAATCAGCTCCTTAGA
CAGGATGGTGCTGCTGCTCCTGCTGCAGCTGCTGCTATTACTGTTGCGAA
TGGTTCGCCGGTTATAGTTGACTATGTCTACATTGTACGGAGTCTGGCCA
TGATTGTTGTGAGGAAAGGGGCTGCAAGCTGGGGCTTACGGACGGGCATG
GCAAAGGTTGGGCAGAAGGAGGAGGAGATTGAGGGGTGGAGGGAAGAGAG
GGAGAAAGGAGAGAAAGAAGGAGGGGAAGGACCGGCGGCAGAGGGGATGT
TTAGAAAGATGCAGGAGTTTTCCCGGTATTTTTAGAAGGATAGGAGCGGC
GTGTGTGTGTGTGTGTGTGTTTGTGAGGAAGGTTTGACCATGAACTCCTG
TATAGGCATCGGGGCATTTATGTGCATTGGCCGTGTGTAAGTGATTAAGG
TTTGGACGCAAATATGTAGGATATAAGGCTGACCGGTCAGAGACAAGAAA
GATGGGAGTAGCAGAGTGGGAGCTGATCAATTTAAGAAGGGAGCCACACA
CAAACACCAAGCGACGACGAGGATGACGGGCAGCAAATGCCCGACGGAAA
AAATATTGACCAAATA back to topCoding sequence (CDS) from alignment at scaffold_8:781516..784131+ >mRNA_4078 ID=mRNA_4078|Name=jgi.p|Nanoce1779_2|586433|organism=Nannochloropsis oceanica|type=CDS|length=4278bp|location=Sequence derived from alignment at scaffold_8:781516..784131+ (Nannochloropsis oceanica)
ATGGCCACAACAACACATTTTATTCCTCTCCTACAACTACACAAGCACAG
GATCGAAACAAAAAGTGGGCAACCAATGCTGCCGCTGGCATGGAGCCGAC
GGTACGGCCCCCTGGCCTTCCCTCCCCTCTTTTCCCTTCTTTGGCAACCA
GCCCGCCTGGTAGCCTCCCCTTTGCCGTTACTGCGCACACACGCCTTGTC
GTGCCTCCGTCAAGGCCAAGGACGCAGTGGTGTGGCTGATGTCGCTACAA
ACATACGTGCACCAACTTTGTATCGCTATAGACATGCTTTCTCTGTGATT
GTTCCAATCTTCCTATTCCTGCTAGGCTCTCCTACGTACGCCTTTCGAGC
TGTCCCCATGCGGGCACGCGTTAGCTCTGAGTCCATTTCGTCCTCGACAA
TGGTGGAAAGAAATTTGAAAAAATTTCGGGCAGTCACACGCTCAGACTCT
GGGCTTTGTTTGTTGAGCCTAACAGGCTCCTCATCGTCAAGTCCGGCCGC
CTACCCTACCACCTCTGAGATATCCTCCAATCCTGTTGCTGCCGCGGAGA
AGGACCCACCCAGTTTATTGACCCCTCTTGCAGATAAAGGATTGTTACTT
TGTGATTTGGCGACTAGGCATCAATTATTTGATAATCAGGAGGAATCTAT
CACCCCTAGTGAGTTGGTGGCATGCCTAAAAGCGCCGGAATCAATGGACG
GTACGGAGCCAGACCCGGAGAGCTTCCGGGCCATCTTATTCGACTTTGTG
ACGACCAAGCCCGAGGCCTTTAGTTTACAAGATCTGGCCACGCTCATCCA
AGCGTCATCAACTTCACTCAATCAGCAATCAGCCATCCTTCCATCTCTCC
TCGACCTCCTTCTCGACACCACTACCCTCCGCATGCGTGCAAACCCCCCT
AACTCCCTCCTTCCAACCACCTGGGTCCACCTGGCCCTCGCTTCCAACTT
CCTGCCTCCTATCCTCAAAGCCCGTCCTGCCTCTCATCGTTTTCTACAAC
AACTGACCACAAATCTCTCTTCGCGTCTATCTGCCCTCTCTCCATCTGAT
CTTGTCCTGGCCATAAGGGTATGGCCCAGAGAGCCAGCCGACTTGGACGA
TTTCAGCTGTAAGCTCATCCAGGCGATCTTGCTGCAGAGTATCAACAGCC
TGCATGCCTTCGATCCACCTGAATTAACCCAGCTGATACAGGGGCTGAGA
AGACCAATGACGCCCACACGGTTATCAATTTTGGAAGCACTCGACGAAAC
AGGGCAAGAAACCCCCGATCTGAACAGCAGACAACGGCTATTCAAAGCAG
CAATCAAAACAATTGCTCGTCGTCACATCCACCAACTCTCCCCCCGCGAG
CTCTCCGTATTCATACAAGCCTGCGTCACGGACCTGAGCTTCGCAGATTG
GTCGAAAGACCTCGGAGTCGCCTTCCCTCGTACCTATACCACTGCAGCCT
TGAAGCATATCCCACACATGGCTCCCCTCCAAATCCTCCCCACTCTCTCC
GCCTTCCTCTTCCTCCGCTCCGTCTTCGATTTCTCCCCTGGCAGTGAAAT
CTACCATGGGCTAGCCAAGATGGCAATAGAAAAGGTGGAGGAGGGAGGAA
AGGAGGAAGGTGAAGAGGATCCTTCTGTCCTCTTGTCCCTCCTTCAGACA
TTCGCTTTTTTTGCCAGCCCTGAGTATGATCCCGGGGAGGTGTTGGAAGT
TTTGACTCGCAAGGTATTGAGACATCTGCACTCCTTCTCTCCCTTCTCCC
TTCGGTGTCTGGTGGAAACGTTGGCGTTGCCGAGCCATTCGTACGTGCCT
TCTTTCGGGATGCTCACAGAGATATCACATCACGCAGCGAATCAGCTCCT
TAGACAGGATGGTGCTGCTGCTCCTGCTGCAGCTGCTGCTATTACTGTTG
CGAATGGTTCGCCGGTTATAGTTGACTATGTCTACATTGTACGGAGTCTG
GCCATGATTGTTGTGAGGAAAGGGGCTGCAAGCTGGGGCTTACGGACGGG
CATGGCAAAGGTTGGGCAGAAGGAGGAGGAGATTGAGGGGTGGAGGGAAG
AGAGGGAGAAAGGAGAGAAAGAAGGAGGGGAAGGACCGGCGGCAGAGGGG
ATGTTTAGAAAGATGCAGGAGTTTTCCCGGTATTTTTAGATGGCCACAAC
AACACATTTTATTCCTCTCCTACAACTACACAAGCACAGGATCGAAACAA
AAAGTGGGCAACCAATGCTGCCGCTGGCATGGAGCCGACGGTACGGCCCC
CTGGCCTTCCCTCCCCTCTTTTCCCTTCTTTGGCAACCAGCCCGCCTGGT
AGCCTCCCCTTTGCCGTTACTGCGCACACACGCCTTGTCGTGCCTCCGTC
AAGGCCAAGGACGCAGTGGTGTGGCTGATGTCGCTACAAACATACGTGCA
CCAACTTTGTATCGCTATAGACATGCTTTCTCTGTGATTGTTCCAATCTT
CCTATTCCTGCTAGGCTCTCCTACGTACGCCTTTCGAGCTGTCCCCATGC
GGGCACGCGTTAGCTCTGAGTCCATTTCGTCCTCGACAATGGTGGAAAGA
AATTTGAAAAAATTTCGGGCAGTCACACGCTCAGACTCTGGGCTTTGTTT
GTTGAGCCTAACAGGCTCCTCATCGTCAAGTCCGGCCGCCTACCCTACCA
CCTCTGAGATATCCTCCAATCCTGTTGCTGCCGCGGAGAAGGACCCACCC
AGTTTATTGACCCCTCTTGCAGATAAAGGATTGTTACTTTGTGATTTGGC
GACTAGGCATCAATTATTTGATAATCAGGAGGAATCTATCACCCCTAGTG
AGTTGGTGGCATGCCTAAAAGCGCCGGAATCAATGGACGGTACGGAGCCA
GACCCGGAGAGCTTCCGGGCCATCTTATTCGACTTTGTGACGACCAAGCC
CGAGGCCTTTAGTTTACAAGATCTGGCCACGCTCATCCAAGCGTCATCAA
CTTCACTCAATCAGCAATCAGCCATCCTTCCATCTCTCCTCGACCTCCTT
CTCGACACCACTACCCTCCGCATGCGTGCAAACCCCCCTAACTCCCTCCT
TCCAACCACCTGGGTCCACCTGGCCCTCGCTTCCAACTTCCTGCCTCCTA
TCCTCAAAGCCCGTCCTGCCTCTCATCGTTTTCTACAACAACTGACCACA
AATCTCTCTTCGCGTCTATCTGCCCTCTCTCCATCTGATCTTGTCCTGGC
CATAAGGGTATGGCCCAGAGAGCCAGCCGACTTGGACGATTTCAGCTGTA
AGCTCATCCAGGCGATCTTGCTGCAGAGTATCAACAGCCTGCATGCCTTC
GATCCACCTGAATTAACCCAGCTGATACAGGGGCTGAGAAGACCAATGAC
GCCCACACGGTTATCAATTTTGGAAGCACTCGACGAAACAGGGCAAGAAA
CCCCCGATCTGAACAGCAGACAACGGCTATTCAAAGCAGCAATCAAAACA
ATTGCTCGTCGTCACATCCACCAACTCTCCCCCCGCGAGCTCTCCGTATT
CATACAAGCCTGCGTCACGGACCTGAGCTTCGCAGATTGGTCGAAAGACC
TCGGAGTCGCCTTCCCTCGTACCTATACCACTGCAGCCTTGAAGCATATC
CCACACATGGCTCCCCTCCAAATCCTCCCCACTCTCTCCGCCTTCCTCTT
CCTCCGCTCCGTCTTCGATTTCTCCCCTGGCAGTGAAATCTACCATGGGC
TAGCCAAGATGGCAATAGAAAAGGTGGAGGAGGGAGGAAAGGAGGAAGGT
GAAGAGGATCCTTCTGTCCTCTTGTCCCTCCTTCAGACATTCGCTTTTTT
TGCCAGCCCTGAGTATGATCCCGGGGAGGTGTTGGAAGTTTTGACTCGCA
AGGTATTGAGACATCTGCACTCCTTCTCTCCCTTCTCCCTTCGGTGTCTG
GTGGAAACGTTGGCGTTGCCGAGCCATTCGTACGTGCCTTCTTTCGGGAT
GCTCACAGAGATATCACATCACGCAGCGAATCAGCTCCTTAGACAGGATG
GTGCTGCTGCTCCTGCTGCAGCTGCTGCTATTACTGTTGCGAATGGTTCG
CCGGTTATAGTTGACTATGTCTACATTGTACGGAGTCTGGCCATGATTGT
TGTGAGGAAAGGGGCTGCAAGCTGGGGCTTACGGACGGGCATGGCAAAGG
TTGGGCAGAAGGAGGAGGAGATTGAGGGGTGGAGGGAAGAGAGGGAGAAA
GGAGAGAAAGAAGGAGGGGAAGGACCGGCGGCAGAGGGGATGTTTAGAAA
GATGCAGGAGTTTTCCCGGTATTTTTAG back to top
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