jgi.p|Nanoce1779_2|670267, mRNA_4077 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670267
Unique NamemRNA_4077
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1844
Alignment locationscaffold_8:779471..781540 -

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Properties
Property NameValue
TranscriptId670353
TrackFilteredModels2
ProteinId670267
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:779471..781540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670267gene_4077Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670267mRNA_4077-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4077CDS_4077Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4077 ID=mRNA_4077|Name=jgi.p|Nanoce1779_2|670267|organism=Nannochloropsis oceanica|type=mRNA|length=1844bp
CCCGCGACAGCCCCCGCTCGCCAAAACAAGTGTCGTCGAGGTGCACACGA
CACCCACTTACATCAGTGAACACACAAATGCAAGCAAGGCAATGAAGTCA
ACATACGGGGCCACCGTTATCAGCGACGCACAGGCCTTTGTGGCGGCAGC
TAAGGCGCGACAAGACGACGGGGCAACAAAAACCTCCTCCCTCCAAGCCC
TAAAGATCCTACAAGACCACGACGCATCCGCGCTACGCAGCGTCCTCGAT
AAATACGACATTTTTGTATTTGACTGTGACGGCGTGTTGTGGCGCGGTGC
CGAGCTCCTACCTGGATCGGCCCGTACCCTTGCCCTGCTCCGCACCCGTG
GCAAGCGCGTCTTTTTCGTGACTAACAACAGCAGCAAAAGCCGCGCCGAG
TACGTCGCCAAGTTCACAAAGCTAAAGATTTCAGTGGATGTCTCGGAGAT
TATTCCTTCATCTTGGGCGGCGGCCGAGTATTTGCGCGTGGAGCGTCCCG
ATGTGAAAAAAGCATTCGTAATTGGCTGCCAAGGCTTGGTGGACGAGCTG
GCGTTGGTAGGGATTGATTCCATTTGCGGTGCGGACAAAGAGTACGCCAC
ACGAATATATGCAACAGAAGCCGATTTTCTAGCTATTGACGCTGACCCTG
ATGTGGGTGCCGTGGTGTGTGGCTGGGATCTGACATTCAATTATGCGAAG
CTGTGCTTGGCAAGCTTGCACCTCCAAAAAAACCCGGGGGCAGCATTCGT
GGCCACCAATAAAGATGCATTTGATAAATTAGCCGACCGAAATGTGCCTG
GGAATGGATGCGCGGTCGCTGCGGTGGAACAGAGCGTGAATCGCATGGCT
GTGACTGTTGGAAAACCCTCGAAATGGCTGGTGGACCGATTGATGACAAT
GCATGGGCTAGACCCGAGGCGGACGGTGGTCGTGGGCGATCGCTTAGATA
CGGATATACAGCTGGGAGTTGTAGGAGGTTGCGATACTGTGTTGGTGGGG
ACGGGTTGCACGAGCACGGTCGAGGCTTTGGTGGTGGAAGAGGAGGAAGG
GGGCCAAGGGAAGGGGAGGGGGTTGCCGACATACTTGTTGTCACATTTGG
GGGCTTTGAGTGGGGATGACATGGAGTGTAGGAATGGAAATGAAAAATCG
GATAACGGGGTGTGACCATAGGGAGGGCCATGAAAAATGTTCAAGCCCTT
GCCCACGGTTGATTATCTTGGCCCGGAATGACTATGTGCTTGCGAACGGA
AATAAATAGCAGAAGAGTTACCACAGTATAACCAACCAGTGGCATATTTG
GTCTATATTGTTTCAAAGCCCATTTACTTCCAAAGGACACGAGGGCTTCA
AAAGCACCCGTGCGGGATTGAGAGTGCTTCTCGTGCGCTTTTGTTTTTTA
CAAGGGTACCCAAGATACCTGGAGATCCATTCGCTTGGACGCAATTTTAT
CAAGTGACAATTCATGTGTATGGCAACAGGAACAAGCGTAACATCCTTTT
AGTACAGCGCTTGCAAAAAGGAGCGAGGATATTTTGACCGCAAGAATTCC
GTTACTATCCAGGGTACGCGTTTACGAAGATTTGGTTTTCTTATATTACC
CTTTCAGGCATGAATGGTGGGAATGACGTGCAGATTACGAAGCGAGAAAA
TTGACGTGCAGACGATGAAGACGATCGATCCAAGTGCCCGACATTTAAAT
CTTCCTCCTTGGTCCTGGTAAAAGACGGCAAGAATGGGAGCGTATTTTGA
CTTTATTTATTGTCCCTTTGGTGTGGCCACGATACTGTCGTTCTCCTCCA
GGCTGACGCGCGGGGGAATCAGCTGTGGGTGTGTGGTGTGTGGC
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protein sequence of jgi.p|Nanoce1779_2|670267

>mRNA_4077-protein ID=mRNA_4077-protein|Name=jgi.p|Nanoce1779_2|670267|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MKSTYGATVISDAQAFVAAAKARQDDGATKTSSLQALKILQDHDASALRS
VLDKYDIFVFDCDGVLWRGAELLPGSARTLALLRTRGKRVFFVTNNSSKS
RAEYVAKFTKLKISVDVSEIIPSSWAAAEYLRVERPDVKKAFVIGCQGLV
DELALVGIDSICGADKEYATRIYATEADFLAIDADPDVGAVVCGWDLTFN
YAKLCLASLHLQKNPGAAFVATNKDAFDKLADRNVPGNGCAVAAVEQSVN
RMAVTVGKPSKWLVDRLMTMHGLDPRRTVVVGDRLDTDIQLGVVGGCDTV
LVGTGCTSTVEALVVEEEEGGQGKGRGLPTYLLSHLGALSGDDMECRNGN
EKSDNGV*
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mRNA from alignment at scaffold_8:779471..781540-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4077 ID=mRNA_4077|Name=jgi.p|Nanoce1779_2|670267|organism=Nannochloropsis oceanica|type=mRNA|length=2070bp|location=Sequence derived from alignment at scaffold_8:779471..781540- (Nannochloropsis oceanica)
CCCGCGACAGCCCCCGCTCGCCAAAACAAGTGTCGTCGAGGTGCACACGA
CACCCACTTACATCAGTGAACACACAAATGCAAGCAAGGCAATGAAGTCA
ACATACGGGGCCACCGTTATCAGCGACGCACAGGCCTTTGTGGCGGCAGC
TAAGGCGCGACAAGACGACGGGGCAACAAAAACCTCCTCCCTCCAAGCCC
TAAAGATCCTACAAGACCACGACGCATCCGCGCTACGCAGCGTCCTCGGT
AAGAGTAGCGTTGGATCCAAATGTTTCTCTGGAAGATTAGTGCTGGCTTA
CTTGGAGGGGGCGGCTCCACTGGCCCTGTTGGCTTTGCTGGTTTTCCCCA
AAAAAAAAGGGCTCTCTTCTAAAGTGGACGGACGGGCGGCTTGGACACTT
CGGGTCCCCTACAAACTTCTACTCTGACACTATTCTTTGCTTCCTATCCC
AATGTGCCTATCGTCCATGCACAGATAAATACGACATTTTTGTATTTGAC
TGTGACGGCGTGTTGTGGCGCGGTGCCGAGCTCCTACCTGGATCGGCCCG
TACCCTTGCCCTGCTCCGCACCCGTGGCAAGCGCGTCTTTTTCGTGACTA
ACAACAGCAGCAAAAGCCGCGCCGAGTACGTCGCCAAGTTCACAAAGCTA
AAGATTTCAGTGGATGTCTCGGAGATTATTCCTTCATCTTGGGCGGCGGC
CGAGTATTTGCGCGTGGAGCGTCCCGATGTGAAAAAAGCATTCGTAATTG
GCTGCCAAGGCTTGGTGGACGAGCTGGCGTTGGTAGGGATTGATTCCATT
TGCGGTGCGGACAAAGAGTACGCCACACGAATATATGCAACAGAAGCCGA
TTTTCTAGCTATTGACGCTGACCCTGATGTGGGTGCCGTGGTGTGTGGCT
GGGATCTGACATTCAATTATGCGAAGCTGTGCTTGGCAAGCTTGCACCTC
CAAAAAAACCCGGGGGCAGCATTCGTGGCCACCAATAAAGATGCATTTGA
TAAATTAGCCGACCGAAATGTGCCTGGGAATGGATGCGCGGTCGCTGCGG
TGGAACAGAGCGTGAATCGCATGGCTGTGACTGTTGGAAAACCCTCGAAA
TGGCTGGTGGACCGATTGATGACAATGCATGGGCTAGACCCGAGGCGGAC
GGTGGTCGTGGGCGATCGCTTAGATACGGATATACAGCTGGGAGTTGTAG
GAGGTTGCGATACTGTGTTGGTGGGGACGGGTTGCACGAGCACGGTCGAG
GCTTTGGTGGTGGAAGAGGAGGAAGGGGGCCAAGGGAAGGGGAGGGGGTT
GCCGACATACTTGTTGTCACATTTGGGGGCTTTGAGTGGGGATGACATGG
AGTGTAGGAATGGAAATGAAAAATCGGATAACGGGGTGTGACCATAGGGA
GGGCCATGAAAAATGTTCAAGCCCTTGCCCACGGTTGATTATCTTGGCCC
GGAATGACTATGTGCTTGCGAACGGAAATAAATAGCAGAAGAGTTACCAC
AGTATAACCAACCAGTGGCATATTTGGTCTATATTGTTTCAAAGCCCATT
TACTTCCAAAGGACACGAGGGCTTCAAAAGCACCCGTGCGGGATTGAGAG
TGCTTCTCGTGCGCTTTTGTTTTTTACAAGGGTACCCAAGATACCTGGAG
ATCCATTCGCTTGGACGCAATTTTATCAAGTGACAATTCATGTGTATGGC
AACAGGAACAAGCGTAACATCCTTTTAGTACAGCGCTTGCAAAAAGGAGC
GAGGATATTTTGACCGCAAGAATTCCGTTACTATCCAGGGTACGCGTTTA
CGAAGATTTGGTTTTCTTATATTACCCTTTCAGGCATGAATGGTGGGAAT
GACGTGCAGATTACGAAGCGAGAAAATTGACGTGCAGACGATGAAGACGA
TCGATCCAAGTGCCCGACATTTAAATCTTCCTCCTTGGTCCTGGTAAAAG
ACGGCAAGAATGGGAGCGTATTTTGACTTTATTTATTGTCCCTTTGGTGT
GGCCACGATACTGTCGTTCTCCTCCAGGCTGACGCGCGGGGGAATCAGCT
GTGGGTGTGTGGTGTGTGGC
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Coding sequence (CDS) from alignment at scaffold_8:779471..781540-

>mRNA_4077 ID=mRNA_4077|Name=jgi.p|Nanoce1779_2|670267|organism=Nannochloropsis oceanica|type=CDS|length=2148bp|location=Sequence derived from alignment at scaffold_8:779471..781540- (Nannochloropsis oceanica)
ATAAATACGACATTTTTGTATTTGACTGTGACGGCGTGTTGTGGCGCGGT
GCCGAGCTCCTACCTGGATCGGCCCGTACCCTTGCCCTGCTCCGCACCCG
TGGCAAGCGCGTCTTTTTCGTGACTAACAACAGCAGCAAAAGCCGCGCCG
AGTACGTCGCCAAGTTCACAAAGCTAAAGATTTCAGTGGATGTCTCGGAG
ATTATTCCTTCATCTTGGGCGGCGGCCGAGTATTTGCGCGTGGAGCGTCC
CGATGTGAAAAAAGCATTCGTAATTGGCTGCCAAGGCTTGGTGGACGAGC
TGGCGTTGGTAGGGATTGATTCCATTTGCGGTGCGGACAAAGAGTACGCC
ACACGAATATATGCAACAGAAGCCGATTTTCTAGCTATTGACGCTGACCC
TGATGTGGGTGCCGTGGTGTGTGGCTGGGATCTGACATTCAATTATGCGA
AGCTGTGCTTGGCAAGCTTGCACCTCCAAAAAAACCCGGGGGCAGCATTC
GTGGCCACCAATAAAGATGCATTTGATAAATTAGCCGACCGAAATGTGCC
TGGGAATGGATGCGCGGTCGCTGCGGTGGAACAGAGCGTGAATCGCATGG
CTGTGACTGTTGGAAAACCCTCGAAATGGCTGGTGGACCGATTGATGACA
ATGCATGGGCTAGACCCGAGGCGGACGGTGGTCGTGGGCGATCGCTTAGA
TACGGATATACAGCTGGGAGTTGTAGGAGGTTGCGATACTGTGTTGGTGG
GGACGGGTTGCACGAGCACGGTCGAGGCTTTGGTGGTGGAAGAGGAGGAA
GGGGGCCAAGGGAAGGGGAGGGGGTTGCCGACATACTTGTTGTCACATTT
GGGGGCTTTGAGTGGGGATGACATGGAGTGTAGGAATGGAAATGAAAAAT
CGGATAACGGGGTGTGAATGAAGTCAACATACGGGGCCACCGTTATCAGC
GACGCACAGGCCTTTGTGGCGGCAGCTAAGGCGCGACAAGACGACGGGGC
AACAAAAACCTCCTCCCTCCAAGCCCTAAAGATCCTACAAGACCACGACG
CATCCGCGCTACGCAGCGTCCTCGATAAATACGACATTTTTGTATTTGAC
TGTGACGGCGTGTTGTGGCGCGGTGCCGAGCTCCTACCTGGATCGGCCCG
TACCCTTGCCCTGCTCCGCACCCGTGGCAAGCGCGTCTTTTTCGTGACTA
ACAACAGCAGCAAAAGCCGCGCCGAGTACGTCGCCAAGTTCACAAAGCTA
AAGATTTCAGTGGATGTCTCGGAGATTATTCCTTCATCTTGGGCGGCGGC
CGAGTATTTGCGCGTGGAGCGTCCCGATGTGAAAAAAGCATTCGTAATTG
GCTGCCAAGGCTTGGTGGACGAGCTGGCGTTGGTAGGGATTGATTCCATT
TGCGGTGCGGACAAAGAGTACGCCACACGAATATATGCAACAGAAGCCGA
TTTTCTAGCTATTGACGCTGACCCTGATGTGGGTGCCGTGGTGTGTGGCT
GGGATCTGACATTCAATTATGCGAAGCTGTGCTTGGCAAGCTTGCACCTC
CAAAAAAACCCGGGGGCAGCATTCGTGGCCACCAATAAAGATGCATTTGA
TAAATTAGCCGACCGAAATGTGCCTGGGAATGGATGCGCGGTCGCTGCGG
TGGAACAGAGCGTGAATCGCATGGCTGTGACTGTTGGAAAACCCTCGAAA
TGGCTGGTGGACCGATTGATGACAATGCATGGGCTAGACCCGAGGCGGAC
GGTGGTCGTGGGCGATCGCTTAGATACGGATATACAGCTGGGAGTTGTAG
GAGGTTGCGATACTGTGTTGGTGGGGACGGGTTGCACGAGCACGGTCGAG
GCTTTGGTGGTGGAAGAGGAGGAAGGGGGCCAAGGGAAGGGGAGGGGGTT
GCCGACATACTTGTTGTCACATTTGGGGGCTTTGAGTGGGGATGACATGG
AGTGTAGGAATGGAAATGAAAAATCGGATAACGGGGTGTGAATGAAGTCA
ACATACGGGGCCACCGTTATCAGCGACGCACAGGCCTTTGTGGCGGCAGC
TAAGGCGCGACAAGACGACGGGGCAACAAAAACCTCCTCCCTCCAAGCCC
TAAAGATCCTACAAGACCACGACGCATCCGCGCTACGCAGCGTCCTCG
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Synonyms
Publications