jgi.p|Nanoce1779_2|540821, mRNA_4076 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|540821
Unique Name	mRNA_4076
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2476
Alignment location	scaffold_8:773237..775712 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	540907
Track	FilteredModels2
ProteinId	540821

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:773237..775712 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|540821	gene_4076	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|540821	mRNA_4076-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4076	CDS_4076	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:773237..775712-
coding sequence from alignment at scaffold_8:773237..775712-

mRNA sequence

>mRNA_4076 ID=mRNA_4076|Name=jgi.p|Nanoce1779_2|540821|organism=Nannochloropsis oceanica|type=mRNA|length=2476bp
GTTCATTTTACACTTGCTCTTTAAGCTCTTGCTCTCGCACTTTACAGGGA
TCCTCGACATCCATAGCTGCAACTGTTTCTTCATCCCTTTCTCTCTACCC
TTCTTCGTCTCCAGCATCTCATCCCGCACCGCAAGTAGGGAGGAGGTCAT
GCAAGTCTCTCGGTCACTAATCAAAAAACTGAATCTTGACGAATTACAGT
TGTGATCCAGCCTTGATTGGTTGGGCATCCTATCACTACCAAGCATGATT
TCAAAGGCAAATGTCGCTGAGAAAGCATTTATGCCCGCGTCTATCGAGTT
GGCGGGGCCAACTTGGCCCATCATCGTCATCATCCACGACCCAGAGAGCT
GCATCATGCCAAGCTCCATAGGACATAGTTCTCCTTCGCCTTGGAGACCG
CCTTTGGACTGACATACACGGCAGGCGATGTCGCATCAAGGTCACGGACA
CCATGCCTGTGTCCCTGTCTTGCGTGTCCATGCCTCAGTGGCCCTCGAAG
TCTTGTGTCCTTTTTTGATGAGCCGGTAATGGTGGCCGCGCTCGTCGCTC
GCGCGAGTAACCGCTATAGTGTGAGCCTCTTTCCCCAAGCCCTTCCCACC
CATCAGCGGCACGCACACGCCACAAACGGACCCTGTCATGTGTTTTGCCA
AGATGTAGGGCGTTGGCCAGGTCGGTGTGCTTTTCCAGGGCTCAATACAA
CCACAAGGTCATTCCCCCCTCCCAGAGTCATCATTTAGCTACTACCTGCC
TTGCACCTATGCACTACACGCCTCACTACTCATCCCGGAGCCTAGCGGAC
GGCTTGTGTTCCCGCGCTGCCTTTCAAGCGCGTCCCTAGCTGTCTGCCTA
TCGTCCCCCTTCTACCAACTGCAACGCTATGCGGCAATTTGTGAAATATT
TCTCATCCTGTACGCCTTCTGCGCACAGCTCTTGCTACTCCCTTCACTTT
CTTTCGGGCTCACGTGCAATCTCACCACACTGTCCCCCATCCCCCTCCCT
TCCCAGCAAGTAGAAAAATGTTCGCCTTTCTCTCCCAAGGCCCCCTCGCC
GAGCTCCTCGCCCCGGTCAAAGCTCCCCACCAACAACTGCACCAGGCCAT
CGAAGAGCACAAGCACGACATAGCTCAGCAACTCTTGCAAGAAGGAGTTT
ACTTCAACGCCCCCGACTCTGGACGAGGAGATGCTTTACCCATCCATACG
GCCTGTCAAGCCGGCAACCAAACCATGATCGACGCCCTCCTCCAAATGGG
CGCCGACCTTACGGGTGCCAAAGACCGGTATGGAAATAGCACCCTCCATG
CAGCTGCCAAAGGTGGAAAAATCGAGACTGTCAAATTCCTCGTTGCTCAA
GGAGTAGATGTATCTCGTCGAAACACCTACCGACAAACGGCCTACGACGT
GGCGGAATCCCATGTCGTGCGTCAATATCTCCTTCCCCTTCAGCTCCGCT
CCGAGCCCGAGCCCGCTATGGGTAGCCTTGCCTCGGTGCACAACCCCGAC
GTGATTCGGGACTATTCCAACCTGCCCCCACCCCCCACCGCCATGTCGTA
CTCGGCCCAAGCTCCTCCCCTGCCACAGGGCATGCAGCCGCAGCAACAGC
AGCAGCAGCCACAACAGGGGCAGCGGAAAGCACCAGTCTTCGACCGACCC
ATCGCTGCGGACGGATTTCACTGCAGCGTGGGTAATGCAGAGCTTGAGGC
AAAGTACGGCCATGTCAAAAAAGACATCCAAATGGCCCCTCCCCCCGTCA
GCGGGTCCGGCCTCCCCCAAGACCCCCAGCAGCAGCAGCAGCAGCAGCAA
CAACAACAACATCAGCGGGCTACGGCAAATCCGACCCAATATTCGGCTTT
TGCTGCGTACGGTGGTCGCCCCCCTCCTCGCTATGTCACCTACAACGCGA
CAGACAACACCTCCGCTCCTTTCATCCCTTCCTCCGCCCCTCCTCCACCC
CCCCCACCCATGCAGCAGCAACATCAGTATCAGCAGCCATTCCAACACAG
GCAGCCGTTTGAGCAGCAGCATCAGCAGCAGCAGCAGCAGCCTGGAGTGT
ACATGAGCAACGCCAACGGCACCAACGCCTCCCCCGTTCCTTCCTCCCCT
CCCAACCATTCCGCCCCCTCGACATCGGGCAACGCCCCATCCCCTTCTTC
CATCGCTCACTCTTCCTCAGCATCTCCTTCTCTCCCTTCTCCCACTCCTG
GAGGATACCGCAACAGCCCTCTTTCCTCTCCCCCTCCCCCTCCTCCCTCC
CTCCCCGCCCTACAACCACCCAAACTCCCCTCCTCCATGCAATTCCATCA
GCAGCAGCAGCAGCAACAGCAGCTACAGCAACCCTCTACCAGGCTAGTGT
GTAACATCCCAACCCTACCCCCTGCTAATGTTGTGAATGTCTTTACCCCT
ATGGCAGACAATGGAGAAGATTGTGTTTCTCTGGACGGATAGAGGAGGAT
ACGGAGGAGGGGGGGGGGGGGAAGGG

protein sequence of jgi.p|Nanoce1779_2|540821

>mRNA_4076-protein ID=mRNA_4076-protein|Name=jgi.p|Nanoce1779_2|540821|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MFAFLSQGPLAELLAPVKAPHQQLHQAIEEHKHDIAQQLLQEGVYFNAPD
SGRGDALPIHTACQAGNQTMIDALLQMGADLTGAKDRYGNSTLHAAAKGG
KIETVKFLVAQGVDVSRRNTYRQTAYDVAESHVVRQYLLPLQLRSEPEPA
MGSLASVHNPDVIRDYSNLPPPPTAMSYSAQAPPLPQGMQPQQQQQQPQQ
GQRKAPVFDRPIAADGFHCSVGNAELEAKYGHVKKDIQMAPPPVSGSGLP
QDPQQQQQQQQQQQHQRATANPTQYSAFAAYGGRPPPRYVTYNATDNTSA
PFIPSSAPPPPPPPMQQQHQYQQPFQHRQPFEQQHQQQQQQPGVYMSNAN
GTNASPVPSSPPNHSAPSTSGNAPSPSSIAHSSSASPSLPSPTPGGYRNS
PLSSPPPPPPSLPALQPPKLPSSMQFHQQQQQQQQLQQPSTRLVCNIPTL
PPANVVNVFTPMADNGEDCVSLDG*

mRNA from alignment at scaffold_8:773237..775712-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4076 ID=mRNA_4076|Name=jgi.p|Nanoce1779_2|540821|organism=Nannochloropsis oceanica|type=mRNA|length=2476bp|location=Sequence derived from alignment at scaffold_8:773237..775712- (Nannochloropsis oceanica)
GTTCATTTTACACTTGCTCTTTAAGCTCTTGCTCTCGCACTTTACAGGGA
TCCTCGACATCCATAGCTGCAACTGTTTCTTCATCCCTTTCTCTCTACCC
TTCTTCGTCTCCAGCATCTCATCCCGCACCGCAAGTAGGGAGGAGGTCAT
GCAAGTCTCTCGGTCACTAATCAAAAAACTGAATCTTGACGAATTACAGT
TGTGATCCAGCCTTGATTGGTTGGGCATCCTATCACTACCAAGCATGATT
TCAAAGGCAAATGTCGCTGAGAAAGCATTTATGCCCGCGTCTATCGAGTT
GGCGGGGCCAACTTGGCCCATCATCGTCATCATCCACGACCCAGAGAGCT
GCATCATGCCAAGCTCCATAGGACATAGTTCTCCTTCGCCTTGGAGACCG
CCTTTGGACTGACATACACGGCAGGCGATGTCGCATCAAGGTCACGGACA
CCATGCCTGTGTCCCTGTCTTGCGTGTCCATGCCTCAGTGGCCCTCGAAG
TCTTGTGTCCTTTTTTGATGAGCCGGTAATGGTGGCCGCGCTCGTCGCTC
GCGCGAGTAACCGCTATAGTGTGAGCCTCTTTCCCCAAGCCCTTCCCACC
CATCAGCGGCACGCACACGCCACAAACGGACCCTGTCATGTGTTTTGCCA
AGATGTAGGGCGTTGGCCAGGTCGGTGTGCTTTTCCAGGGCTCAATACAA
CCACAAGGTCATTCCCCCCTCCCAGAGTCATCATTTAGCTACTACCTGCC
TTGCACCTATGCACTACACGCCTCACTACTCATCCCGGAGCCTAGCGGAC
GGCTTGTGTTCCCGCGCTGCCTTTCAAGCGCGTCCCTAGCTGTCTGCCTA
TCGTCCCCCTTCTACCAACTGCAACGCTATGCGGCAATTTGTGAAATATT
TCTCATCCTGTACGCCTTCTGCGCACAGCTCTTGCTACTCCCTTCACTTT
CTTTCGGGCTCACGTGCAATCTCACCACACTGTCCCCCATCCCCCTCCCT
TCCCAGCAAGTAGAAAAATGTTCGCCTTTCTCTCCCAAGGCCCCCTCGCC
GAGCTCCTCGCCCCGGTCAAAGCTCCCCACCAACAACTGCACCAGGCCAT
CGAAGAGCACAAGCACGACATAGCTCAGCAACTCTTGCAAGAAGGAGTTT
ACTTCAACGCCCCCGACTCTGGACGAGGAGATGCTTTACCCATCCATACG
GCCTGTCAAGCCGGCAACCAAACCATGATCGACGCCCTCCTCCAAATGGG
CGCCGACCTTACGGGTGCCAAAGACCGGTATGGAAATAGCACCCTCCATG
CAGCTGCCAAAGGTGGAAAAATCGAGACTGTCAAATTCCTCGTTGCTCAA
GGAGTAGATGTATCTCGTCGAAACACCTACCGACAAACGGCCTACGACGT
GGCGGAATCCCATGTCGTGCGTCAATATCTCCTTCCCCTTCAGCTCCGCT
CCGAGCCCGAGCCCGCTATGGGTAGCCTTGCCTCGGTGCACAACCCCGAC
GTGATTCGGGACTATTCCAACCTGCCCCCACCCCCCACCGCCATGTCGTA
CTCGGCCCAAGCTCCTCCCCTGCCACAGGGCATGCAGCCGCAGCAACAGC
AGCAGCAGCCACAACAGGGGCAGCGGAAAGCACCAGTCTTCGACCGACCC
ATCGCTGCGGACGGATTTCACTGCAGCGTGGGTAATGCAGAGCTTGAGGC
AAAGTACGGCCATGTCAAAAAAGACATCCAAATGGCCCCTCCCCCCGTCA
GCGGGTCCGGCCTCCCCCAAGACCCCCAGCAGCAGCAGCAGCAGCAGCAA
CAACAACAACATCAGCGGGCTACGGCAAATCCGACCCAATATTCGGCTTT
TGCTGCGTACGGTGGTCGCCCCCCTCCTCGCTATGTCACCTACAACGCGA
CAGACAACACCTCCGCTCCTTTCATCCCTTCCTCCGCCCCTCCTCCACCC
CCCCCACCCATGCAGCAGCAACATCAGTATCAGCAGCCATTCCAACACAG
GCAGCCGTTTGAGCAGCAGCATCAGCAGCAGCAGCAGCAGCCTGGAGTGT
ACATGAGCAACGCCAACGGCACCAACGCCTCCCCCGTTCCTTCCTCCCCT
CCCAACCATTCCGCCCCCTCGACATCGGGCAACGCCCCATCCCCTTCTTC
CATCGCTCACTCTTCCTCAGCATCTCCTTCTCTCCCTTCTCCCACTCCTG
GAGGATACCGCAACAGCCCTCTTTCCTCTCCCCCTCCCCCTCCTCCCTCC
CTCCCCGCCCTACAACCACCCAAACTCCCCTCCTCCATGCAATTCCATCA
GCAGCAGCAGCAGCAACAGCAGCTACAGCAACCCTCTACCAGGCTAGTGT
GTAACATCCCAACCCTACCCCCTGCTAATGTTGTGAATGTCTTTACCCCT
ATGGCAGACAATGGAGAAGATTGTGTTTCTCTGGACGGATAGAGGAGGAT
ACGGAGGAGGGGGGGGGGGGGAAGGG

Coding sequence (CDS) from alignment at scaffold_8:773237..775712-

>mRNA_4076 ID=mRNA_4076|Name=jgi.p|Nanoce1779_2|540821|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at scaffold_8:773237..775712- (Nannochloropsis oceanica)
ATGTTCGCCTTTCTCTCCCAAGGCCCCCTCGCCGAGCTCCTCGCCCCGGT
CAAAGCTCCCCACCAACAACTGCACCAGGCCATCGAAGAGCACAAGCACG
ACATAGCTCAGCAACTCTTGCAAGAAGGAGTTTACTTCAACGCCCCCGAC
TCTGGACGAGGAGATGCTTTACCCATCCATACGGCCTGTCAAGCCGGCAA
CCAAACCATGATCGACGCCCTCCTCCAAATGGGCGCCGACCTTACGGGTG
CCAAAGACCGGTATGGAAATAGCACCCTCCATGCAGCTGCCAAAGGTGGA
AAAATCGAGACTGTCAAATTCCTCGTTGCTCAAGGAGTAGATGTATCTCG
TCGAAACACCTACCGACAAACGGCCTACGACGTGGCGGAATCCCATGTCG
TGCGTCAATATCTCCTTCCCCTTCAGCTCCGCTCCGAGCCCGAGCCCGCT
ATGGGTAGCCTTGCCTCGGTGCACAACCCCGACGTGATTCGGGACTATTC
CAACCTGCCCCCACCCCCCACCGCCATGTCGTACTCGGCCCAAGCTCCTC
CCCTGCCACAGGGCATGCAGCCGCAGCAACAGCAGCAGCAGCCACAACAG
GGGCAGCGGAAAGCACCAGTCTTCGACCGACCCATCGCTGCGGACGGATT
TCACTGCAGCGTGGGTAATGCAGAGCTTGAGGCAAAGTACGGCCATGTCA
AAAAAGACATCCAAATGGCCCCTCCCCCCGTCAGCGGGTCCGGCCTCCCC
CAAGACCCCCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACATCAGCG
GGCTACGGCAAATCCGACCCAATATTCGGCTTTTGCTGCGTACGGTGGTC
GCCCCCCTCCTCGCTATGTCACCTACAACGCGACAGACAACACCTCCGCT
CCTTTCATCCCTTCCTCCGCCCCTCCTCCACCCCCCCCACCCATGCAGCA
GCAACATCAGTATCAGCAGCCATTCCAACACAGGCAGCCGTTTGAGCAGC
AGCATCAGCAGCAGCAGCAGCAGCCTGGAGTGTACATGAGCAACGCCAAC
GGCACCAACGCCTCCCCCGTTCCTTCCTCCCCTCCCAACCATTCCGCCCC
CTCGACATCGGGCAACGCCCCATCCCCTTCTTCCATCGCTCACTCTTCCT
CAGCATCTCCTTCTCTCCCTTCTCCCACTCCTGGAGGATACCGCAACAGC
CCTCTTTCCTCTCCCCCTCCCCCTCCTCCCTCCCTCCCCGCCCTACAACC
ACCCAAACTCCCCTCCTCCATGCAATTCCATCAGCAGCAGCAGCAGCAAC
AGCAGCTACAGCAACCCTCTACCAGGCTAGTGTGTAACATCCCAACCCTA
CCCCCTGCTAATGTTGTGAATGTCTTTACCCCTATGGCAGACAATGGAGA
AGATTGTGTTTCTCTGGACGGATAG

Synonyms

Publications