jgi.p|Nanoce1779_2|586412, mRNA_4075 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586412
Unique NamemRNA_4075
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length587
Alignment locationscaffold_8:771616..772562 -

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Properties
Property NameValue
TranscriptId586498
TrackFilteredModels2
ProteinId586412
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:771616..772562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586412gene_4075Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586412mRNA_4075-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4075CDS_4075Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4075 ID=mRNA_4075|Name=jgi.p|Nanoce1779_2|586412|organism=Nannochloropsis oceanica|type=mRNA|length=587bp
GCCAGGCTGTCAGACCACTTTAAATTTCCCCTTTTCTACGTATTTTTTCA
TAATTTACATCGCGTCAATCGCACATACAAACATCATTGTCGTCATCTGT
CCTTTTTTCCTCCAGCTTCTTCCTTGGGGAGGGGATCCAGGCCTACCAGC
TCCCGCACTAAAGGGTTCTTGGAAAGGGCGTGGCGCCATAGTAGTGTCCA
GGCAAGGACAAGAAACACGCATATGACAGTGCTGGCGACCGCCACGTAAA
GGATGCTGGCCGCGATTTGGCTTTGCAAGGCCTGCATGATGGCTGAGAGG
GTGGGATTGGCGAGTGTGCTGGTAGGGGAGCGCTTTACCAAGATCCTAAT
TCCCCTTCAAGGACCGCGGCAACATTCCTCTTGGGTCAAGAGCGGTCCCT
CTTATTCTCGTGCTGACCCTCCTTGTCCTTGGCCTGTGCATGTGGTGGTG
GTGCCGCGCGTGATAATTGGTACGATAGGGTGTAATCAAATTGATGCTCG
CTGAAACGGAGTAACGAGGGCGGCAAATCGTCATGCCCATGCCCATGCCA
CTCTCCTCAATTTGTAAAGCCATGGGCATATTGGACT
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protein sequence of jgi.p|Nanoce1779_2|586412

>mRNA_4075-protein ID=mRNA_4075-protein|Name=jgi.p|Nanoce1779_2|586412|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MLAAIWLCKACMMAERVGLASVLVGERFTKILIPLQGPRQHSSWVKSGPS
YSRADPPCPWPVHVVVVPRVIIGTIGCNQIDAR*
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mRNA from alignment at scaffold_8:771616..772562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4075 ID=mRNA_4075|Name=jgi.p|Nanoce1779_2|586412|organism=Nannochloropsis oceanica|type=mRNA|length=947bp|location=Sequence derived from alignment at scaffold_8:771616..772562- (Nannochloropsis oceanica)
GCCAGGCTGTCAGACCACTTTAAATTTCCCCTTTTCTACGTATTTTTTCA
TAATTTACATCGCGTCAATCGCACATACAAACATCATTGTCGTCATCTGT
CCTTTTTTCCTCCAGCTTCTTCCTTGGGGAGGGGATCCAGGCCTACCAGC
TCCCGCACTAAAGGGTTCTTGGAAAGGGCGTGGCGCCATAGTAGTGTCCA
GGCTGTAATTGGAAGAGGGGAGAAGCGATGACTGAGTAATGAAGATTTGG
GACTGAATTTATCAAACAATGGACTAAGGAAAGATTTATTTGGTCTACTT
AGATGTTGCCTGTCGATCGCAAGACCTATCAGAAAGCGGCCTAAGCGGCC
CTTCTCTCATGCACCAGCCCCTCCCTCCACCCCTTCGTCTCAGTTGTCGA
CAAGACACAAATACAGCTTTGAAATTGATTGTAGCGTCTGTCCGTACCAG
ATTCCGCCCGGTTGCTTGAGTGGCGGGTCCTTCGCCAGCCTCGTTCCGAC
ATATCGCCTGAGAGCCCCTCCTTCATCCATCCATGCTGCGCTCTCAACCA
TACATTACGTACCAAGGACAAGAAACACGCATATGACAGTGCTGGCGACC
GCCACGTAAAGGATGCTGGCCGCGATTTGGCTTTGCAAGGCCTGCATGAT
GGCTGAGAGGGTGGGATTGGCGAGTGTGCTGGTAGGGGAGCGCTTTACCA
AGATCCTAATTCCCCTTCAAGGACCGCGGCAACATTCCTCTTGGGTCAAG
AGCGGTCCCTCTTATTCTCGTGCTGACCCTCCTTGTCCTTGGCCTGTGCA
TGTGGTGGTGGTGCCGCGCGTGATAATTGGTACGATAGGGTGTAATCAAA
TTGATGCTCGCTGAAACGGAGTAACGAGGGCGGCAAATCGTCATGCCCAT
GCCCATGCCACTCTCCTCAATTTGTAAAGCCATGGGCATATTGGACT
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Coding sequence (CDS) from alignment at scaffold_8:771616..772562-

>mRNA_4075 ID=mRNA_4075|Name=jgi.p|Nanoce1779_2|586412|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at scaffold_8:771616..772562- (Nannochloropsis oceanica)
ATGCTGGCCGCGATTTGGCTTTGCAAGGCCTGCATGATGGCTGAGAGGGT
GGGATTGGCGAGTGTGCTGGTAGGGGAGCGCTTTACCAAGATCCTAATTC
CCCTTCAAGGACCGCGGCAACATTCCTCTTGGGTCAAGAGCGGTCCCTCT
TATTCTCGTGCTGACCCTCCTTGTCCTTGGCCTGTGCATGTGGTGGTGGT
GCCGCGCGTGATAATTGGTACGATAGGGTGTAATCAAATTGATGCTCGCT
GA
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Synonyms
Publications