jgi.p|Nanoce1779_2|586408, mRNA_4074 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586408
Unique NamemRNA_4074
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1079
Alignment locationscaffold_8:769602..770680 -

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Properties
Property NameValue
TranscriptId586494
TrackFilteredModels2
ProteinId586408
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:769602..770680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586408gene_4074Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586408mRNA_4074-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4074CDS_4074Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4074 ID=mRNA_4074|Name=jgi.p|Nanoce1779_2|586408|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp
GGAGAAGACGAGGGTGGGAGGGTGGGAAGGAGGGAGGGTGGGGTGGATTA
CCGGAGGGACTTTGCTCGTGCGATTAATGAATATTTAGAGAAGCACTTGG
TGGCGGCTGACTTGATGGTGTCATTGTTGAGTATGAGTAAGATGCACCAT
AACCCCACAATTAAAGCACCGGTGCCCAGATTCTTCTATCAGCGAGAAGG
GAGTTTTATGATCAATCAATCGGCGTTGTCTTCGGCAATAGCGGCGATTC
CACCCTTGGAGGTATTGAGGGAGAGTGGGACGGAAGAGGAGCGAGGGGCA
AGGGGGTTGCCATTTGGGAGTTGTGTGTTGTTGCATCACTTGTTTTTCCG
GGAGCGGGTGACGGTGGTGGATGGGAGGGAGGCAGGGAGGGAGGGAGGAT
TGCGGACCGTAGGACAGAGTCCTGCTTCGTCACTGTTGCAGCCAGAACAA
TCTCCCCCCTCCCCTTACTCCTCTCCCTCCTTAATCACCACCCTCTTCTC
TAAAGCCGGCTTTAACACCGCCTCCTCGACCGATCTCCCGTGCATGGTAT
TTCCGCTGCATCATGCCCAAGACTCGCGCTTCACCGCCCTTTCTGAGAGA
CACGGGACTTGCTACGGCTTCCACGGCTCCCCCCCCATCAACTTCTTCTC
AATCGTTTCCCTGGGCTTGAGATCGTTAAGTGGCACAAAAGGGATGAAGA
ATGGGGCAGTTTTCGGCGATGGGGTGTATGTGGCCTCGAAATGCGAGGTG
GCGAGGAATTTTGGTGGGTGGGGAGTCCCGGTGTGGAGGCATAGCCGCTT
TGGGGTCGTCCCCGGGGGAAAGGGAGGTGCACCTTTGTTTGCGTATCAGA
TTATTGCCTTGTGTGAAGTTATTAACTTGCCGCAGTATCGGTGTGGGTTG
ACGGGAGGGGGCAGCAGTGGCACACCAGCGCCTTCCACTTCTACCTTTTC
CTCCGACTTTTTTTCATCTTCTTCGAGCTGTCCCACTACGAGGCAGCGCC
GACGAGGGAGCAACGGCACGAGCAGCAGCAGCAGCAGTAGCAGCAGCAGC
AGCAGTAGCAGCAGTAGCAGCAGTAGCAG
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protein sequence of jgi.p|Nanoce1779_2|586408

>mRNA_4074-protein ID=mRNA_4074-protein|Name=jgi.p|Nanoce1779_2|586408|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MVSLLSMSKMHHNPTIKAPVPRFFYQREGSFMINQSALSSAIAAIPPLEV
LRESGTEEERGARGLPFGSCVLLHHLFFRERVTVVDGREAGREGGLRTVG
QSPASSLLQPEQSPPSPYSSPSLITTLFSKAGFNTASSTDLPCMVFPLHH
AQDSRFTALSERHGTCYGFHGSPPINFFSIVSLGLRSLSGTKGMKNGAVF
GDGVYVASKCEVARNFGGWGVPVWRHSRFGVVPGGKGGAPLFAYQIIALC
EVINLPQYRCGLTGGGSSGTPAPSTSTFSSDFFSSSSSCPTTRQRRRGSN
GTSSSSSS
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mRNA from alignment at scaffold_8:769602..770680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4074 ID=mRNA_4074|Name=jgi.p|Nanoce1779_2|586408|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp|location=Sequence derived from alignment at scaffold_8:769602..770680- (Nannochloropsis oceanica)
GGAGAAGACGAGGGTGGGAGGGTGGGAAGGAGGGAGGGTGGGGTGGATTA
CCGGAGGGACTTTGCTCGTGCGATTAATGAATATTTAGAGAAGCACTTGG
TGGCGGCTGACTTGATGGTGTCATTGTTGAGTATGAGTAAGATGCACCAT
AACCCCACAATTAAAGCACCGGTGCCCAGATTCTTCTATCAGCGAGAAGG
GAGTTTTATGATCAATCAATCGGCGTTGTCTTCGGCAATAGCGGCGATTC
CACCCTTGGAGGTATTGAGGGAGAGTGGGACGGAAGAGGAGCGAGGGGCA
AGGGGGTTGCCATTTGGGAGTTGTGTGTTGTTGCATCACTTGTTTTTCCG
GGAGCGGGTGACGGTGGTGGATGGGAGGGAGGCAGGGAGGGAGGGAGGAT
TGCGGACCGTAGGACAGAGTCCTGCTTCGTCACTGTTGCAGCCAGAACAA
TCTCCCCCCTCCCCTTACTCCTCTCCCTCCTTAATCACCACCCTCTTCTC
TAAAGCCGGCTTTAACACCGCCTCCTCGACCGATCTCCCGTGCATGGTAT
TTCCGCTGCATCATGCCCAAGACTCGCGCTTCACCGCCCTTTCTGAGAGA
CACGGGACTTGCTACGGCTTCCACGGCTCCCCCCCCATCAACTTCTTCTC
AATCGTTTCCCTGGGCTTGAGATCGTTAAGTGGCACAAAAGGGATGAAGA
ATGGGGCAGTTTTCGGCGATGGGGTGTATGTGGCCTCGAAATGCGAGGTG
GCGAGGAATTTTGGTGGGTGGGGAGTCCCGGTGTGGAGGCATAGCCGCTT
TGGGGTCGTCCCCGGGGGAAAGGGAGGTGCACCTTTGTTTGCGTATCAGA
TTATTGCCTTGTGTGAAGTTATTAACTTGCCGCAGTATCGGTGTGGGTTG
ACGGGAGGGGGCAGCAGTGGCACACCAGCGCCTTCCACTTCTACCTTTTC
CTCCGACTTTTTTTCATCTTCTTCGAGCTGTCCCACTACGAGGCAGCGCC
GACGAGGGAGCAACGGCACGAGCAGCAGCAGCAGCAGTAGCAGCAGCAGC
AGCAGTAGCAGCAGTAGCAGCAGTAGCAG
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Coding sequence (CDS) from alignment at scaffold_8:769602..770680-

>mRNA_4074 ID=mRNA_4074|Name=jgi.p|Nanoce1779_2|586408|organism=Nannochloropsis oceanica|type=CDS|length=926bp|location=Sequence derived from alignment at scaffold_8:769602..770680- (Nannochloropsis oceanica)
ATGGTGTCATTGTTGAGTATGAGTAAGATGCACCATAACCCCACAATTAA
AGCACCGGTGCCCAGATTCTTCTATCAGCGAGAAGGGAGTTTTATGATCA
ATCAATCGGCGTTGTCTTCGGCAATAGCGGCGATTCCACCCTTGGAGGTA
TTGAGGGAGAGTGGGACGGAAGAGGAGCGAGGGGCAAGGGGGTTGCCATT
TGGGAGTTGTGTGTTGTTGCATCACTTGTTTTTCCGGGAGCGGGTGACGG
TGGTGGATGGGAGGGAGGCAGGGAGGGAGGGAGGATTGCGGACCGTAGGA
CAGAGTCCTGCTTCGTCACTGTTGCAGCCAGAACAATCTCCCCCCTCCCC
TTACTCCTCTCCCTCCTTAATCACCACCCTCTTCTCTAAAGCCGGCTTTA
ACACCGCCTCCTCGACCGATCTCCCGTGCATGGTATTTCCGCTGCATCAT
GCCCAAGACTCGCGCTTCACCGCCCTTTCTGAGAGACACGGGACTTGCTA
CGGCTTCCACGGCTCCCCCCCCATCAACTTCTTCTCAATCGTTTCCCTGG
GCTTGAGATCGTTAAGTGGCACAAAAGGGATGAAGAATGGGGCAGTTTTC
GGCGATGGGGTGTATGTGGCCTCGAAATGCGAGGTGGCGAGGAATTTTGG
TGGGTGGGGAGTCCCGGTGTGGAGGCATAGCCGCTTTGGGGTCGTCCCCG
GGGGAAAGGGAGGTGCACCTTTGTTTGCGTATCAGATTATTGCCTTGTGT
GAAGTTATTAACTTGCCGCAGTATCGGTGTGGGTTGACGGGAGGGGGCAG
CAGTGGCACACCAGCGCCTTCCACTTCTACCTTTTCCTCCGACTTTTTTT
CATCTTCTTCGAGCTGTCCCACTACGAGGCAGCGCCGACGAGGGAGCAAC
GGCACGAGCAGCAGCAGCAGCAGTAG
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Synonyms
Publications