jgi.p|Nanoce1779_2|586401, mRNA_4072 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586401
Unique NamemRNA_4072
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1114
Alignment locationscaffold_8:766352..767465 +

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Properties
Property NameValue
TranscriptId586487
TrackFilteredModels2
ProteinId586401
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:766352..767465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586401gene_4072Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586401mRNA_4072-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4072CDS_4072Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4072 ID=mRNA_4072|Name=jgi.p|Nanoce1779_2|586401|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp
ACAGGCGTCCCAATTGCCACTAAAGCACGCCTCGCCACATATTTTGAAGG
ATACTCGACTGCTCCTCCCATTCCTCCCGCATTCCATACGCCACAAGAGC
CACCCAGCCCCAGTTCTGCGCAGCTATATACCTGCTGACGATGAAATTAA
ATATGTTGATCAGTTTGCTGTCCTGCAGCCTCGTCAGTGGTTTCCTGGTC
CCGTCCCCTGCCAGTGCCGTATCGCCCCTCCGTGCCTCGGCTGCAGTCAT
GGCTGCGACAGCCGAGCCCGTGGTTGAGGCCTTGGCAGGAAAGAAGCCCG
AGTACGTCTTGATGGAAGATGCATCAGGACGGAGCATCAATACAACGATG
CTGGCATTCCTTAAGCAGGACGGTAAGCGGTACTGCTTGGGGACGCCGGT
GGATAGCCCGATGGTTTTGATGGACTCGGGGGGGCGGCCCATTGACCCTT
CGGATGAATTAGCGGAGAAGATGTTTTACCAGCTGGACGATTATTTTACG
AATAAGGGTTATGAAATTCTCCATACTGCGGGATTTTTGACCATCGCGGG
GGATCCGGATTGGTTCGATGATGATGATGTGGTGGACGAGGATGATGTTG
ACAGTGACGACGAATACGACAGCGAGGACGAGGAAGAAGAGGACGCTGGG
GAGGTAGCTGCACAGGCGGCCCGGTCCGCGGCTGCAAGGGGGGAGAACAG
TGTGAGGGTTGATCCAATTTGTGACGTCGAGTTTGATGGGTCGATGTATC
GGGTTGTGCAGTTATTGGACCGGGTGCCTCTGAGCGCGGAGGAGGACGGG
GAGGGAAAGTGGCGATTGGTGAGTGACTCCGAGACACATTTGGGTTTGGA
AAAGATGGCAAAGAAGTAAGAGGCCAGCAACATATAGAGAGACGAGCTTG
TCCTCTGCAGACCTGACTGACTTTCGCAACAAGTACAGTGAGTAGGCAGC
GTCCCAAGCAATGAATTTTCGGCTTAAAGATGGGCTTTGACCATCGGAAA
TAAAATGATGTCAGCTTGGATGTGATGTTGGGAGAGACCGATGAGGTCAC
AAAGGCAAACGCATTAGCACTTTTTGTAGGACAAGCAAAAAAGAGAAATA
TCAAATACGGCCTA
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protein sequence of jgi.p|Nanoce1779_2|586401

>mRNA_4072-protein ID=mRNA_4072-protein|Name=jgi.p|Nanoce1779_2|586401|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MKLNMLISLLSCSLVSGFLVPSPASAVSPLRASAAVMAATAEPVVEALAG
KKPEYVLMEDASGRSINTTMLAFLKQDGKRYCLGTPVDSPMVLMDSGGRP
IDPSDELAEKMFYQLDDYFTNKGYEILHTAGFLTIAGDPDWFDDDDVVDE
DDVDSDDEYDSEDEEEEDAGEVAAQAARSAAARGENSVRVDPICDVEFDG
SMYRVVQLLDRVPLSAEEDGEGKWRLVSDSETHLGLEKMAKK*
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mRNA from alignment at scaffold_8:766352..767465+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4072 ID=mRNA_4072|Name=jgi.p|Nanoce1779_2|586401|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp|location=Sequence derived from alignment at scaffold_8:766352..767465+ (Nannochloropsis oceanica)
ACAGGCGTCCCAATTGCCACTAAAGCACGCCTCGCCACATATTTTGAAGG
ATACTCGACTGCTCCTCCCATTCCTCCCGCATTCCATACGCCACAAGAGC
CACCCAGCCCCAGTTCTGCGCAGCTATATACCTGCTGACGATGAAATTAA
ATATGTTGATCAGTTTGCTGTCCTGCAGCCTCGTCAGTGGTTTCCTGGTC
CCGTCCCCTGCCAGTGCCGTATCGCCCCTCCGTGCCTCGGCTGCAGTCAT
GGCTGCGACAGCCGAGCCCGTGGTTGAGGCCTTGGCAGGAAAGAAGCCCG
AGTACGTCTTGATGGAAGATGCATCAGGACGGAGCATCAATACAACGATG
CTGGCATTCCTTAAGCAGGACGGTAAGCGGTACTGCTTGGGGACGCCGGT
GGATAGCCCGATGGTTTTGATGGACTCGGGGGGGCGGCCCATTGACCCTT
CGGATGAATTAGCGGAGAAGATGTTTTACCAGCTGGACGATTATTTTACG
AATAAGGGTTATGAAATTCTCCATACTGCGGGATTTTTGACCATCGCGGG
GGATCCGGATTGGTTCGATGATGATGATGTGGTGGACGAGGATGATGTTG
ACAGTGACGACGAATACGACAGCGAGGACGAGGAAGAAGAGGACGCTGGG
GAGGTAGCTGCACAGGCGGCCCGGTCCGCGGCTGCAAGGGGGGAGAACAG
TGTGAGGGTTGATCCAATTTGTGACGTCGAGTTTGATGGGTCGATGTATC
GGGTTGTGCAGTTATTGGACCGGGTGCCTCTGAGCGCGGAGGAGGACGGG
GAGGGAAAGTGGCGATTGGTGAGTGACTCCGAGACACATTTGGGTTTGGA
AAAGATGGCAAAGAAGTAAGAGGCCAGCAACATATAGAGAGACGAGCTTG
TCCTCTGCAGACCTGACTGACTTTCGCAACAAGTACAGTGAGTAGGCAGC
GTCCCAAGCAATGAATTTTCGGCTTAAAGATGGGCTTTGACCATCGGAAA
TAAAATGATGTCAGCTTGGATGTGATGTTGGGAGAGACCGATGAGGTCAC
AAAGGCAAACGCATTAGCACTTTTTGTAGGACAAGCAAAAAAGAGAAATA
TCAAATACGGCCTA
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Coding sequence (CDS) from alignment at scaffold_8:766352..767465+

>mRNA_4072 ID=mRNA_4072|Name=jgi.p|Nanoce1779_2|586401|organism=Nannochloropsis oceanica|type=CDS|length=729bp|location=Sequence derived from alignment at scaffold_8:766352..767465+ (Nannochloropsis oceanica)
ATGAAATTAAATATGTTGATCAGTTTGCTGTCCTGCAGCCTCGTCAGTGG
TTTCCTGGTCCCGTCCCCTGCCAGTGCCGTATCGCCCCTCCGTGCCTCGG
CTGCAGTCATGGCTGCGACAGCCGAGCCCGTGGTTGAGGCCTTGGCAGGA
AAGAAGCCCGAGTACGTCTTGATGGAAGATGCATCAGGACGGAGCATCAA
TACAACGATGCTGGCATTCCTTAAGCAGGACGGTAAGCGGTACTGCTTGG
GGACGCCGGTGGATAGCCCGATGGTTTTGATGGACTCGGGGGGGCGGCCC
ATTGACCCTTCGGATGAATTAGCGGAGAAGATGTTTTACCAGCTGGACGA
TTATTTTACGAATAAGGGTTATGAAATTCTCCATACTGCGGGATTTTTGA
CCATCGCGGGGGATCCGGATTGGTTCGATGATGATGATGTGGTGGACGAG
GATGATGTTGACAGTGACGACGAATACGACAGCGAGGACGAGGAAGAAGA
GGACGCTGGGGAGGTAGCTGCACAGGCGGCCCGGTCCGCGGCTGCAAGGG
GGGAGAACAGTGTGAGGGTTGATCCAATTTGTGACGTCGAGTTTGATGGG
TCGATGTATCGGGTTGTGCAGTTATTGGACCGGGTGCCTCTGAGCGCGGA
GGAGGACGGGGAGGGAAAGTGGCGATTGGTGAGTGACTCCGAGACACATT
TGGGTTTGGAAAAGATGGCAAAGAAGTAA
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Synonyms
Publications