jgi.p|Nanoce1779_2|586398, mRNA_4071 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586398
Unique NamemRNA_4071
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length771
Alignment locationscaffold_8:765110..766117 -

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Properties
Property NameValue
TranscriptId586484
TrackFilteredModels2
ProteinId586398
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:765110..766117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586398gene_4071Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586398mRNA_4071-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4071CDS_4071Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4071 ID=mRNA_4071|Name=jgi.p|Nanoce1779_2|586398|organism=Nannochloropsis oceanica|type=mRNA|length=771bp
CAACAGGCAACTACGTACAGGATCAATAGTAATTGTACCGCCTTGTTGCA
GGACCTAGAAGATGGAAAGGAGCTTTTGGCAAAAGGAAGAAAGGCATATT
TTTGATGCTTATGGAAGGGAGCTGGCCGAGGCCAGGGCCCAGGTCCTAGC
TGCTTCCGCCTGCGCCGCTTCCTTCGCGGCAGCATCTTCGGCCTGCGACG
ATGTTGACTATGACCCCGGCAACGCAGACGCCGACTGGGCAGGCATCGTG
AAAAAGCGAGGACGAAAAGTCCATTTTCCTCTGACGCAAAAATCTGTCTT
GATCGCACACCATTTAGCGGGGTTAACAGATGCCTCGTCCTCATCCTCGT
CGTCGTCCTTGACCTCATCCCGACAGCGGGCACCCGCATCCAGAGGCCAT
AACACCACCTCTTTCGTAATCGGCGGGGTCGACGCTCCAGTGCCATCTAA
TTGGGCAACGAGCTACCAGGCTCAAGTTGAGGGTACGCCCACGCCAGAAG
AAATGATGGATCCCCTACGGCTGCGCTCCAAAAAGAAGGCAGGCGTGCAG
CAGCAGGAGCTACAGGAGCTGCAGCGGGGTGGAACGGAGATGGAGTCGCA
TGCGACTACATCAGCGCGTCAAGGAGGAGATGAGGAAGTAAATGACCGCA
ACACTCTAATTGGGTACCGGGCTCCACCCATATTTCGAGGCAAAGCGTCG
TTCTTGGTGGGGATTGGCAAAAAGCTGCATAAAGAGCAGAGTTTAATAGA
AAGGAAGAATCATTGAAAGCT
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protein sequence of jgi.p|Nanoce1779_2|586398

>mRNA_4071-protein ID=mRNA_4071-protein|Name=jgi.p|Nanoce1779_2|586398|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MERSFWQKEERHIFDAYGRELAEARAQVLAASACAASFAAASSACDDVDY
DPGNADADWAGIVKKRGRKVHFPLTQKSVLIAHHLAGLTDASSSSSSSSL
TSSRQRAPASRGHNTTSFVIGGVDAPVPSNWATSYQAQVEGTPTPEEMMD
PLRLRSKKKAGVQQQELQELQRGGTEMESHATTSARQGGDEEVNDRNTLI
GYRAPPIFRGKASFLVGIGKKLHKEQSLIERKNH*
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mRNA from alignment at scaffold_8:765110..766117-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4071 ID=mRNA_4071|Name=jgi.p|Nanoce1779_2|586398|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp|location=Sequence derived from alignment at scaffold_8:765110..766117- (Nannochloropsis oceanica)
CAACAGGCAACTACGTACAGGATCAATAGTAATTGTACCGCCTTGTTGCA
GGACCTAGAAGATGGAAAGGGTACGTTTAACTCATATATTTTGTTTGAGG
GAGTATTAGTTCTAGTTCTTTTTTTCTGCCGTCTGCCGTTGCTACACTCC
TATAGAACTATCGCATGCAACCTGACGTCCTCTAGGACTTGCATACGAGT
ACTTTTTTGGGGGGAGTATTAAGCTTATCTGCCAAATTGTGTGTGGTAGG
CCTGTCACGCTGGTACCTCCTTTCCTTGATTTTTATTCCCTTTCCGAAAT
CAATTAGAGCTTTTGGCAAAAGGAAGAAAGGCATATTTTTGATGCTTATG
GAAGGGAGCTGGCCGAGGCCAGGGCCCAGGTCCTAGCTGCTTCCGCCTGC
GCCGCTTCCTTCGCGGCAGCATCTTCGGCCTGCGACGATGTTGACTATGA
CCCCGGCAACGCAGACGCCGACTGGGCAGGCATCGTGAAAAAGCGAGGAC
GAAAAGTCCATTTTCCTCTGACGCAAAAATCTGTCTTGATCGCACACCAT
TTAGCGGGGTTAACAGATGCCTCGTCCTCATCCTCGTCGTCGTCCTTGAC
CTCATCCCGACAGCGGGCACCCGCATCCAGAGGCCATAACACCACCTCTT
TCGTAATCGGCGGGGTCGACGCTCCAGTGCCATCTAATTGGGCAACGAGC
TACCAGGCTCAAGTTGAGGGTACGCCCACGCCAGAAGAAATGATGGATCC
CCTACGGCTGCGCTCCAAAAAGAAGGCAGGCGTGCAGCAGCAGGAGCTAC
AGGAGCTGCAGCGGGGTGGAACGGAGATGGAGTCGCATGCGACTACATCA
GCGCGTCAAGGAGGAGATGAGGAAGTAAATGACCGCAACACTCTAATTGG
GTACCGGGCTCCACCCATATTTCGAGGCAAAGCGTCGTTCTTGGTGGGGA
TTGGCAAAAAGCTGCATAAAGAGCAGAGTTTAATAGAAAGGAAGAATCAT
TGAAAGCT
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Coding sequence (CDS) from alignment at scaffold_8:765110..766117-

>mRNA_4071 ID=mRNA_4071|Name=jgi.p|Nanoce1779_2|586398|organism=Nannochloropsis oceanica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_8:765110..766117- (Nannochloropsis oceanica)
AGCTTTTGGCAAAAGGAAGAAAGGCATATTTTTGATGCTTATGGAAGGGA
GCTGGCCGAGGCCAGGGCCCAGGTCCTAGCTGCTTCCGCCTGCGCCGCTT
CCTTCGCGGCAGCATCTTCGGCCTGCGACGATGTTGACTATGACCCCGGC
AACGCAGACGCCGACTGGGCAGGCATCGTGAAAAAGCGAGGACGAAAAGT
CCATTTTCCTCTGACGCAAAAATCTGTCTTGATCGCACACCATTTAGCGG
GGTTAACAGATGCCTCGTCCTCATCCTCGTCGTCGTCCTTGACCTCATCC
CGACAGCGGGCACCCGCATCCAGAGGCCATAACACCACCTCTTTCGTAAT
CGGCGGGGTCGACGCTCCAGTGCCATCTAATTGGGCAACGAGCTACCAGG
CTCAAGTTGAGGGTACGCCCACGCCAGAAGAAATGATGGATCCCCTACGG
CTGCGCTCCAAAAAGAAGGCAGGCGTGCAGCAGCAGGAGCTACAGGAGCT
GCAGCGGGGTGGAACGGAGATGGAGTCGCATGCGACTACATCAGCGCGTC
AAGGAGGAGATGAGGAAGTAAATGACCGCAACACTCTAATTGGGTACCGG
GCTCCACCCATATTTCGAGGCAAAGCGTCGTTCTTGGTGGGGATTGGCAA
AAAGCTGCATAAAGAGCAGAGTTTAATAGAAAGGAAGAATCATTGAATGG
AAAGGAGCTTTTGGCAAAAGGAAGAAAGGCATATTTTTGATGCTTATGGA
AGGGAGCTGGCCGAGGCCAGGGCCCAGGTCCTAGCTGCTTCCGCCTGCGC
CGCTTCCTTCGCGGCAGCATCTTCGGCCTGCGACGATGTTGACTATGACC
CCGGCAACGCAGACGCCGACTGGGCAGGCATCGTGAAAAAGCGAGGACGA
AAAGTCCATTTTCCTCTGACGCAAAAATCTGTCTTGATCGCACACCATTT
AGCGGGGTTAACAGATGCCTCGTCCTCATCCTCGTCGTCGTCCTTGACCT
CATCCCGACAGCGGGCACCCGCATCCAGAGGCCATAACACCACCTCTTTC
GTAATCGGCGGGGTCGACGCTCCAGTGCCATCTAATTGGGCAACGAGCTA
CCAGGCTCAAGTTGAGGGTACGCCCACGCCAGAAGAAATGATGGATCCCC
TACGGCTGCGCTCCAAAAAGAAGGCAGGCGTGCAGCAGCAGGAGCTACAG
GAGCTGCAGCGGGGTGGAACGGAGATGGAGTCGCATGCGACTACATCAGC
GCGTCAAGGAGGAGATGAGGAAGTAAATGACCGCAACACTCTAATTGGGT
ACCGGGCTCCACCCATATTTCGAGGCAAAGCGTCGTTCTTGGTGGGGATT
GGCAAAAAGCTGCATAAAGAGCAGAGTTTAATAGAAAGGAAGAATCATTG
AATGGAAAGG
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Synonyms
Publications