jgi.p|Nanoce1779_2|423536, mRNA_4069 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|423536
Unique Name	mRNA_4069
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1587
Alignment location	scaffold_8:761920..763694 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	423622
Track	FilteredModels2
ProteinId	423536

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:761920..763694 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|423536	gene_4069	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|423536	mRNA_4069-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4069	CDS_4069	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:761920..763694+
coding sequence from alignment at scaffold_8:761920..763694+

mRNA sequence

>mRNA_4069 ID=mRNA_4069|Name=jgi.p|Nanoce1779_2|423536|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp
GTCCCTTCGGGATTCTAGCAAGGCCCTCAGGCTGCCTGCTTGCTATACTC
ATCTCTCTTATCTTACGTCCACACACCTATCGGCGTGCACAACACACAGA
CCAAAAAAAGTATTAGAGCCATGTTTGCTCAGCACTTGCGGTTTGCGTCG
CGCCTTGGAGCCGCCGGCGTAGGCGCTGCGGTCCTCAGCAGCAAGCATAT
CGAAGGCAACAGCAGCACCCGCTGCGACGCAGTGGGGCAGCAGCAGCTCA
GGCGCACCACACCCCCACAACAGCGCTTAGTATTCGACCACGCCTTGGAC
GACCGGGAAAAGGACACGGCTGGCTTCGTGGGGGTCTTTTTGGACGCGGC
CTCGGTGGCTCGCGTGCAAAACGCGGTCGGCGGCCCCCTCTCCCGCAATG
CCCACGCCCTCATCCAGCTCCACCCCGAACCGGAATTGAAGCGCTCGTTT
GCACCATTATTTGGGACCAAGGCCAAGGTCGTGGTCCGCGGTGTGGCCAC
GGACGTCTCAACCCAGCAACAGGTCATCATCGTGGACGTGAGCGTCGGCA
GCGGCCCTCACAGCCGTCTGACCCCCTCCAAGAACGGGCATGGGAGCGTT
CCTACCATTTCGATGGCATCCGAAAGCTGGGACGATGATGTCGCAGATTT
GCTAGGCGTGGATCTGGCGAGACGGTTGTTAGAAAATGGGATATTGCATG
TCAAGGGGTCGTGGGATGGGGTCTTGCCCGGACAGGTACTTGATGGGATT
AAGTACCCACCCACGAGGGCAATTTTTAGGGAGCTGGAAATCCCCATCGC
ATGTGAGGGGACGGTGTGTGCGTCCGGGGATTATGATGATCGAGCAGCGC
AGTGTATGGTGAAGAAGGAGGTAGGGGTAGTGGTGGAAGCACCGAAGGAG
GAGGAAGGAGAAGGGGATGTGAAGGGGGAGTGTCCGCTCTGTACTTACAT
GATGAATAGCCCGTGTAAGGACGTATTTGTTGTATTTAAGGCTTGCATTG
ACAAGGCGGGGAGCACGGACGAACAGGATGATTTGCAGAGGTGCGAGCCG
TCGGCAGCAAGCGTGCATGAGTGCATTCAGAAGTTTGGGTTGTTCAGGGA
GCATCTGGAGGGTGAGGGCGAGGAAAAGGATGATTAGGAGAAAGAAGACA
TTTTGATAGTAGGAGTGCCGACTGGAAAAGCGGGAGGGATACCGCACACG
CATGTAGTAGGGACATGAAAAAGGAGTGAGAAAATGAGGGAGGAAAAACA
GGAGTACCAACCATGGCGGCCTCGGACGCCTAAATAAGCGAGACTCGGTA
ACGCTCTAATTTGACTCGAGGGACATGACAATTTTATAACTACGGTGAGT
AGCTGAGTACATGGTGAGCGCAGTCGTCGTCTTGAGAGAGACTCGTCGCA
CTAGGTGAGAGCATCAGGAGGAAGGAGCGGGAGCAGCAGGAGCAGCAGCG
GGAGCAGCAGAGAGTGTAGATAGTAAAATACAGAAAAAAAAGGCTTTGTC
TTGGGTGTATGGTACACCGGAAGAAATAGAATTAGCAGAGGAAAAGAAGT
AAAGACAAACTAGAGATTGAAAGGGAGAGAGCAACGG

protein sequence of jgi.p|Nanoce1779_2|423536

>mRNA_4069-protein ID=mRNA_4069-protein|Name=jgi.p|Nanoce1779_2|423536|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MFAQHLRFASRLGAAGVGAAVLSSKHIEGNSSTRCDAVGQQQLRRTTPPQ
QRLVFDHALDDREKDTAGFVGVFLDAASVARVQNAVGGPLSRNAHALIQL
HPEPELKRSFAPLFGTKAKVVVRGVATDVSTQQQVIIVDVSVGSGPHSRL
TPSKNGHGSVPTISMASESWDDDVADLLGVDLARRLLENGILHVKGSWDG
VLPGQVLDGIKYPPTRAIFRELEIPIACEGTVCASGDYDDRAAQCMVKKE
VGVVVEAPKEEEGEGDVKGECPLCTYMMNSPCKDVFVVFKACIDKAGSTD
EQDDLQRCEPSAASVHECIQKFGLFREHLEGEGEEKDD*

mRNA from alignment at scaffold_8:761920..763694+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4069 ID=mRNA_4069|Name=jgi.p|Nanoce1779_2|423536|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp|location=Sequence derived from alignment at scaffold_8:761920..763694+ (Nannochloropsis oceanica)
GTCCCTTCGGGATTCTAGCAAGGCCCTCAGGCTGCCTGCTTGCTATACTC
ATCTCTCTTATCTTACGTCCACACACCTATCGGCGTGCACAACACACAGA
CCAAAAAAAGTATTAGAGCCATGTTTGCTCAGCACTTGCGGTTTGCGTCG
CGCCTTGGAGCCGCCGGCGTAGGCGCTGCGGTCCTCAGCAGCAAGCATAT
CGAAGGCAACAGCAGCACCCGCTGCGACGCAGTGGGGCAGCAGCAGCTCA
GGCGCACCACACCCCCACAACAGCGCTTAGTATTCGACCACGCCTTGGAC
GACCGGGAAAAGGACACGGCTGGCTTCGTGGGGGTCTTTTTGGACGCGGC
CTCGGTGGCTCGCGTGCAAAACGCGGTCGGCGGCCCCCTCTCCCGCAATG
CCCACGCCCTCATCCAGCTCCACCCCGAACCGGAATTGAAGCGCTCGTTT
GCACCATTATTTGGGACCAAGGTATGTGTGTGTCAAGGAGGGGCCAAAGC
GAGCGGTGGGATCGCAGGAAGATCTGTCATTCATCTCCCTAGTTCGGAGG
CACTGACTTGCATCCTCCATAAGGACACAAGTTTATGTCAACTACCTCTC
GGGCCACTCACGACACTGACGTCTCCCCTCTGTCTTTTTCTCGTTTAATT
GTTGTCTAGGCCAAGGTCGTGGTCCGCGGTGTGGCCACGGACGTCTCAAC
CCAGCAACAGGTCATCATCGTGGACGTGAGCGTCGGCAGCGGCCCTCACA
GCCGTCTGACCCCCTCCAAGAACGGGCATGGGAGCGTTCCTACCATTTCG
ATGGCATCCGAAAGCTGGGACGATGATGTCGCAGATTTGCTAGGCGTGGA
TCTGGCGAGACGGTTGTTAGAAAATGGGATATTGCATGTCAAGGGGTCGT
GGGATGGGGTCTTGCCCGGACAGGTACTTGATGGGATTAAGTACCCACCC
ACGAGGGCAATTTTTAGGGAGCTGGAAATCCCCATCGCATGTGAGGGGAC
GGTGTGTGCGTCCGGGGATTATGATGATCGAGCAGCGCAGTGTATGGTGA
AGAAGGAGGTAGGGGTAGTGGTGGAAGCACCGAAGGAGGAGGAAGGAGAA
GGGGATGTGAAGGGGGAGTGTCCGCTCTGTACTTACATGATGAATAGCCC
GTGTAAGGACGTATTTGTTGTATTTAAGGCTTGCATTGACAAGGCGGGGA
GCACGGACGAACAGGATGATTTGCAGAGGTGCGAGCCGTCGGCAGCAAGC
GTGCATGAGTGCATTCAGAAGTTTGGGTTGTTCAGGGAGCATCTGGAGGG
TGAGGGCGAGGAAAAGGATGATTAGGAGAAAGAAGACATTTTGATAGTAG
GAGTGCCGACTGGAAAAGCGGGAGGGATACCGCACACGCATGTAGTAGGG
ACATGAAAAAGGAGTGAGAAAATGAGGGAGGAAAAACAGGAGTACCAACC
ATGGCGGCCTCGGACGCCTAAATAAGCGAGACTCGGTAACGCTCTAATTT
GACTCGAGGGACATGACAATTTTATAACTACGGTGAGTAGCTGAGTACAT
GGTGAGCGCAGTCGTCGTCTTGAGAGAGACTCGTCGCACTAGGTGAGAGC
ATCAGGAGGAAGGAGCGGGAGCAGCAGGAGCAGCAGCGGGAGCAGCAGAG
AGTGTAGATAGTAAAATACAGAAAAAAAAGGCTTTGTCTTGGGTGTATGG
TACACCGGAAGAAATAGAATTAGCAGAGGAAAAGAAGTAAAGACAAACTA
GAGATTGAAAGGGAGAGAGCAACGG

Coding sequence (CDS) from alignment at scaffold_8:761920..763694+

>mRNA_4069 ID=mRNA_4069|Name=jgi.p|Nanoce1779_2|423536|organism=Nannochloropsis oceanica|type=CDS|length=2034bp|location=Sequence derived from alignment at scaffold_8:761920..763694+ (Nannochloropsis oceanica)
ATGTTTGCTCAGCACTTGCGGTTTGCGTCGCGCCTTGGAGCCGCCGGCGT
AGGCGCTGCGGTCCTCAGCAGCAAGCATATCGAAGGCAACAGCAGCACCC
GCTGCGACGCAGTGGGGCAGCAGCAGCTCAGGCGCACCACACCCCCACAA
CAGCGCTTAGTATTCGACCACGCCTTGGACGACCGGGAAAAGGACACGGC
TGGCTTCGTGGGGGTCTTTTTGGACGCGGCCTCGGTGGCTCGCGTGCAAA
ACGCGGTCGGCGGCCCCCTCTCCCGCAATGCCCACGCCCTCATCCAGCTC
CACCCCGAACCGGAATTGAAGCGCTCGTTTGCACCATTATTTGGGACCAA
GGCCAAGGTCGTGGTCCGCGGTGTGGCCACGGACGTCTCAACCCAGCAAC
AGGTCATCATCGTGGACGTGAGCGTCGGCAGCGGCCCTCACAGCCGTCTG
ACCCCCTCCAAGAACGGGCATGGGAGCGTTCCTACCATTTCGATGGCATC
CGAAAGCTGGGACGATGATGTCGCAGATTTGCTAGGCGTGGATCTGGCGA
GACGGTTGTTAGAAAATGGGATATTGCATGTCAAGGGGTCGTGGGATGGG
GTCTTGCCCGGACAGGTACTTGATGGGATTAAGTACCCACCCACGAGGGC
AATTTTTAGGGAGCTGGAAATCCCCATCGCATGTGAGGGGACGGTGTGTG
CGTCCGGGGATTATGATGATCGAGCAGCGCAGTGTATGGTGAAGAAGGAG
GTAGGGGTAGTGGTGGAAGCACCGAAGGAGGAGGAAGGAGAAGGGGATGT
GAAGGGGGAGTGTCCGCTCTGTACTTACATGATGAATAGCCCGTGTAAGG
ACGTATTTGTTGTATTTAAGGCTTGCATTGACAAGGCGGGGAGCACGGAC
GAACAGGATGATTTGCAGAGGTGCGAGCCGTCGGCAGCAAGCGTGCATGA
GTGCATTCAGAAGTTTGGGTTGTTCAGGGAGCATCTGGAGGGTGAGGGCG
AGGAAAAGGATGATTAGATGTTTGCTCAGCACTTGCGGTTTGCGTCGCGC
CTTGGAGCCGCCGGCGTAGGCGCTGCGGTCCTCAGCAGCAAGCATATCGA
AGGCAACAGCAGCACCCGCTGCGACGCAGTGGGGCAGCAGCAGCTCAGGC
GCACCACACCCCCACAACAGCGCTTAGTATTCGACCACGCCTTGGACGAC
CGGGAAAAGGACACGGCTGGCTTCGTGGGGGTCTTTTTGGACGCGGCCTC
GGTGGCTCGCGTGCAAAACGCGGTCGGCGGCCCCCTCTCCCGCAATGCCC
ACGCCCTCATCCAGCTCCACCCCGAACCGGAATTGAAGCGCTCGTTTGCA
CCATTATTTGGGACCAAGGCCAAGGTCGTGGTCCGCGGTGTGGCCACGGA
CGTCTCAACCCAGCAACAGGTCATCATCGTGGACGTGAGCGTCGGCAGCG
GCCCTCACAGCCGTCTGACCCCCTCCAAGAACGGGCATGGGAGCGTTCCT
ACCATTTCGATGGCATCCGAAAGCTGGGACGATGATGTCGCAGATTTGCT
AGGCGTGGATCTGGCGAGACGGTTGTTAGAAAATGGGATATTGCATGTCA
AGGGGTCGTGGGATGGGGTCTTGCCCGGACAGGTACTTGATGGGATTAAG
TACCCACCCACGAGGGCAATTTTTAGGGAGCTGGAAATCCCCATCGCATG
TGAGGGGACGGTGTGTGCGTCCGGGGATTATGATGATCGAGCAGCGCAGT
GTATGGTGAAGAAGGAGGTAGGGGTAGTGGTGGAAGCACCGAAGGAGGAG
GAAGGAGAAGGGGATGTGAAGGGGGAGTGTCCGCTCTGTACTTACATGAT
GAATAGCCCGTGTAAGGACGTATTTGTTGTATTTAAGGCTTGCATTGACA
AGGCGGGGAGCACGGACGAACAGGATGATTTGCAGAGGTGCGAGCCGTCG
GCAGCAAGCGTGCATGAGTGCATTCAGAAGTTTGGGTTGTTCAGGGAGCA
TCTGGAGGGTGAGGGCGAGGAAAAGGATGATTAG

Synonyms

Publications