jgi.p|Nanoce1779_2|586379, mRNA_4067 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586379
Unique Name	mRNA_4067
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1638
Alignment location	scaffold_8:756391..758028 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586465
Track	FilteredModels2
ProteinId	586379

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:756391..758028 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586379	gene_4067	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586379	mRNA_4067-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4067	CDS_4067	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:756391..758028+
coding sequence from alignment at scaffold_8:756391..758028+

mRNA sequence

>mRNA_4067 ID=mRNA_4067|Name=jgi.p|Nanoce1779_2|586379|organism=Nannochloropsis oceanica|type=mRNA|length=1638bp
CTAAAGGCAACCACTCTAACAACATGCACAGTAAGCGTAGGAGAACGAGC
AGATGATTTTAGTCTCATCATCGTATTGACGGCAGGCTCCAGGCATAATT
TTCTATAGTAGCAGAACTCATCCGCTCCCCTCCTCACTGGCAGGCTGCCC
CGGCCCCCGTCCCCACACTCAGACAAAGCTTCGACGCATTTTTCACCGCC
CGCACGTCCGCCTCGGCTCTAGGCGCTACAAGGAAATTTCGAAAAACATA
CTATGAAGTTGACCACTACCGTCGTCCTCGTCGGAAGCATGGCCTTGACC
CAGGCATTCTCCACACCTTCCCCCAAGCCGACCAGCCCTTTGTTTGGCAG
CAGCAGCCGTGGCAGTGGCAACCCCCAACAGGTCTCCTCCTCTTCGCCAC
CCTCCTCGTCATCATGTCCAGCGTCGTTCACTTCCAACACGCCCCTCTCT
TCCTCCGCCTCGTCCTCCCCAAGCCCCCCCAAAAGGAAAGGCTTCTCCCA
TTTCTTCGACAAGCTGAACCCCCTCAAGTACCGTGACTTTGGCGTGGGCA
CAGAGCTTAAAGACGGGATCGCGACCTTTTATGACGAGTCCACTGCCATT
TGGGAAGAGGTATGGGGAGAGCATTTGCACCACGGCTATTACTACACAGG
CAAGGAGAAGAATCATCAGAAAGCGCAAGTTGACATGATTGAAGAGTCCC
TGAAGTTTGCAGGGGTGGGCGATGTGACAACCAGCGGGGTGAAGCGGGCG
GTGGATGTGGGGTGCGGAATTGGAGGGTCGTCCCGATTTTTGGCGACAAA
GTACGGAGCTCAGGTTAGGGGGATCACATTGAGTCCGTTTCAATGTCGAC
GAGCGCAGTTTTTGACGCAGAAGGCCGGGTTAGAAGATAAGGCGAAATTT
TCGGTAGCGGATGCTCTGGCGATGCCTTTCCAAAAAGAGACGTTTGATTT
GGTGTGGAGTATGGAGAGTGGGGAGCATATGCCGGATAAGAAGCAGTTCA
TGAGAGAATTGGTCCGGGTGGCGGCGCCCGGGGGAAGAATTGTCGTAGTG
ACTTGGTGTCATCGCAATTTAAAAGACGGGGAGAAATTGACGAGATTTGA
GAGGGGGTTGCTCAAATTGATCAATTCGATTTATTTTTTGCCGCCGTGGG
TCAGTATGAATAGGTACGTGGCTCTGGCGGAGGAGGAGGGGTTAGAGGGA
ATTAAGACGGCGGATTGGACTCAGGTCGTGAAGCCGTTTTGGCCGGCAGT
GCTCGTGAGTTGCTTGAATTGGAAAAGTATCAAGGTGCTGTTCACCAGCG
AGACGGTACGGAAGGGGGCGTTGGCGATATTGTACATGATGGTGGGGTAC
TCGGTAGGATTGATTAAGTTTGGGGTGATAACCGGACAGAAGAAAAAGTA
ATTAGGGGGGGGATGGAAAGGAGGGAAGGAAAAAAAAGGAAAGAAGAAGC
AAGAACGCACGGCACCGAAAGGACGAAAAAGGAAAATAATTTAAAGTCCC
AGGAAGATCAGGTGAGACAACACGAAGGGGGAATTCTACTACAGGGGCAT
TGTGCGAATGCATCCGAGAGTTGTCATGAAACACAAAAATGGCAAGAGAG
AACACGGGGAGAAAATTGAAAGTGACAGTCCGGAAAAC

protein sequence of jgi.p|Nanoce1779_2|586379

>mRNA_4067-protein ID=mRNA_4067-protein|Name=jgi.p|Nanoce1779_2|586379|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MKLTTTVVLVGSMALTQAFSTPSPKPTSPLFGSSSRGSGNPQQVSSSSPP
SSSSCPASFTSNTPLSSSASSSPSPPKRKGFSHFFDKLNPLKYRDFGVGT
ELKDGIATFYDESTAIWEEVWGEHLHHGYYYTGKEKNHQKAQVDMIEESL
KFAGVGDVTTSGVKRAVDVGCGIGGSSRFLATKYGAQVRGITLSPFQCRR
AQFLTQKAGLEDKAKFSVADALAMPFQKETFDLVWSMESGEHMPDKKQFM
RELVRVAAPGGRIVVVTWCHRNLKDGEKLTRFERGLLKLINSIYFLPPWV
SMNRYVALAEEEGLEGIKTADWTQVVKPFWPAVLVSCLNWKSIKVLFTSE
TVRKGALAILYMMVGYSVGLIKFGVITGQKKK*

mRNA from alignment at scaffold_8:756391..758028+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4067 ID=mRNA_4067|Name=jgi.p|Nanoce1779_2|586379|organism=Nannochloropsis oceanica|type=mRNA|length=1638bp|location=Sequence derived from alignment at scaffold_8:756391..758028+ (Nannochloropsis oceanica)
CTAAAGGCAACCACTCTAACAACATGCACAGTAAGCGTAGGAGAACGAGC
AGATGATTTTAGTCTCATCATCGTATTGACGGCAGGCTCCAGGCATAATT
TTCTATAGTAGCAGAACTCATCCGCTCCCCTCCTCACTGGCAGGCTGCCC
CGGCCCCCGTCCCCACACTCAGACAAAGCTTCGACGCATTTTTCACCGCC
CGCACGTCCGCCTCGGCTCTAGGCGCTACAAGGAAATTTCGAAAAACATA
CTATGAAGTTGACCACTACCGTCGTCCTCGTCGGAAGCATGGCCTTGACC
CAGGCATTCTCCACACCTTCCCCCAAGCCGACCAGCCCTTTGTTTGGCAG
CAGCAGCCGTGGCAGTGGCAACCCCCAACAGGTCTCCTCCTCTTCGCCAC
CCTCCTCGTCATCATGTCCAGCGTCGTTCACTTCCAACACGCCCCTCTCT
TCCTCCGCCTCGTCCTCCCCAAGCCCCCCCAAAAGGAAAGGCTTCTCCCA
TTTCTTCGACAAGCTGAACCCCCTCAAGTACCGTGACTTTGGCGTGGGCA
CAGAGCTTAAAGACGGGATCGCGACCTTTTATGACGAGTCCACTGCCATT
TGGGAAGAGGTATGGGGAGAGCATTTGCACCACGGCTATTACTACACAGG
CAAGGAGAAGAATCATCAGAAAGCGCAAGTTGACATGATTGAAGAGTCCC
TGAAGTTTGCAGGGGTGGGCGATGTGACAACCAGCGGGGTGAAGCGGGCG
GTGGATGTGGGGTGCGGAATTGGAGGGTCGTCCCGATTTTTGGCGACAAA
GTACGGAGCTCAGGTTAGGGGGATCACATTGAGTCCGTTTCAATGTCGAC
GAGCGCAGTTTTTGACGCAGAAGGCCGGGTTAGAAGATAAGGCGAAATTT
TCGGTAGCGGATGCTCTGGCGATGCCTTTCCAAAAAGAGACGTTTGATTT
GGTGTGGAGTATGGAGAGTGGGGAGCATATGCCGGATAAGAAGCAGTTCA
TGAGAGAATTGGTCCGGGTGGCGGCGCCCGGGGGAAGAATTGTCGTAGTG
ACTTGGTGTCATCGCAATTTAAAAGACGGGGAGAAATTGACGAGATTTGA
GAGGGGGTTGCTCAAATTGATCAATTCGATTTATTTTTTGCCGCCGTGGG
TCAGTATGAATAGGTACGTGGCTCTGGCGGAGGAGGAGGGGTTAGAGGGA
ATTAAGACGGCGGATTGGACTCAGGTCGTGAAGCCGTTTTGGCCGGCAGT
GCTCGTGAGTTGCTTGAATTGGAAAAGTATCAAGGTGCTGTTCACCAGCG
AGACGGTACGGAAGGGGGCGTTGGCGATATTGTACATGATGGTGGGGTAC
TCGGTAGGATTGATTAAGTTTGGGGTGATAACCGGACAGAAGAAAAAGTA
ATTAGGGGGGGGATGGAAAGGAGGGAAGGAAAAAAAAGGAAAGAAGAAGC
AAGAACGCACGGCACCGAAAGGACGAAAAAGGAAAATAATTTAAAGTCCC
AGGAAGATCAGGTGAGACAACACGAAGGGGGAATTCTACTACAGGGGCAT
TGTGCGAATGCATCCGAGAGTTGTCATGAAACACAAAAATGGCAAGAGAG
AACACGGGGAGAAAATTGAAAGTGACAGTCCGGAAAAC

Coding sequence (CDS) from alignment at scaffold_8:756391..758028+

>mRNA_4067 ID=mRNA_4067|Name=jgi.p|Nanoce1779_2|586379|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at scaffold_8:756391..758028+ (Nannochloropsis oceanica)
ATGAAGTTGACCACTACCGTCGTCCTCGTCGGAAGCATGGCCTTGACCCA
GGCATTCTCCACACCTTCCCCCAAGCCGACCAGCCCTTTGTTTGGCAGCA
GCAGCCGTGGCAGTGGCAACCCCCAACAGGTCTCCTCCTCTTCGCCACCC
TCCTCGTCATCATGTCCAGCGTCGTTCACTTCCAACACGCCCCTCTCTTC
CTCCGCCTCGTCCTCCCCAAGCCCCCCCAAAAGGAAAGGCTTCTCCCATT
TCTTCGACAAGCTGAACCCCCTCAAGTACCGTGACTTTGGCGTGGGCACA
GAGCTTAAAGACGGGATCGCGACCTTTTATGACGAGTCCACTGCCATTTG
GGAAGAGGTATGGGGAGAGCATTTGCACCACGGCTATTACTACACAGGCA
AGGAGAAGAATCATCAGAAAGCGCAAGTTGACATGATTGAAGAGTCCCTG
AAGTTTGCAGGGGTGGGCGATGTGACAACCAGCGGGGTGAAGCGGGCGGT
GGATGTGGGGTGCGGAATTGGAGGGTCGTCCCGATTTTTGGCGACAAAGT
ACGGAGCTCAGGTTAGGGGGATCACATTGAGTCCGTTTCAATGTCGACGA
GCGCAGTTTTTGACGCAGAAGGCCGGGTTAGAAGATAAGGCGAAATTTTC
GGTAGCGGATGCTCTGGCGATGCCTTTCCAAAAAGAGACGTTTGATTTGG
TGTGGAGTATGGAGAGTGGGGAGCATATGCCGGATAAGAAGCAGTTCATG
AGAGAATTGGTCCGGGTGGCGGCGCCCGGGGGAAGAATTGTCGTAGTGAC
TTGGTGTCATCGCAATTTAAAAGACGGGGAGAAATTGACGAGATTTGAGA
GGGGGTTGCTCAAATTGATCAATTCGATTTATTTTTTGCCGCCGTGGGTC
AGTATGAATAGGTACGTGGCTCTGGCGGAGGAGGAGGGGTTAGAGGGAAT
TAAGACGGCGGATTGGACTCAGGTCGTGAAGCCGTTTTGGCCGGCAGTGC
TCGTGAGTTGCTTGAATTGGAAAAGTATCAAGGTGCTGTTCACCAGCGAG
ACGGTACGGAAGGGGGCGTTGGCGATATTGTACATGATGGTGGGGTACTC
GGTAGGATTGATTAAGTTTGGGGTGATAACCGGACAGAAGAAAAAGTAA

Synonyms

Publications