jgi.p|Nanoce1779_2|586376, mRNA_4064 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586376
Unique Name	mRNA_4064
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1680
Alignment location	scaffold_8:752655..754522 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586462
Track	FilteredModels2
ProteinId	586376

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:752655..754522 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586376	gene_4064	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586376	mRNA_4064-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4064	CDS_4064	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:752655..754522+
coding sequence from alignment at scaffold_8:752655..754522+

mRNA sequence

>mRNA_4064 ID=mRNA_4064|Name=jgi.p|Nanoce1779_2|586376|organism=Nannochloropsis oceanica|type=mRNA|length=1680bp
ACAGTTTTAATCCTTTCCAGACGACCCCCCCTTTAAGATGAAGACATCCC
TTGTTACCCTGGCCCTGGCTGCCGTCCCCGCCTCTGCCTTCATGGGTGGA
TTCATGGGCAAGAACTTCGCCGCACCCACTAAGGCTTCCCCTGCTACCCC
CACCACTATGTTCTTGAACTTCGGCAAGAAAGGCGGTGTGTCCGTCCCCA
AGCCCGCAGGCAAGGCCGCCCCGGCTAAGGTAACCCCTAAGAGGGCTGCA
GCCGCCGTCAAGAAGGCGGCGCCCGTCAAGAAGGCTGCAGCCGCCGCTGT
TAAAAAGGCGGCGCCCGTCAAGAAGGCTGCAACCGCCGCTGTTAAAAAGG
CGGTGCCTGTCAAGAAGGTGGCCGCACCCTTGTCTAACCCTGACTTTGCT
GGTGGGTTGATCGGCTCCGATGTGGAGGCCATTCGATTCGACCCCTGGAA
CCTAGCCGCGGAGCGCGACCCCGAAGGCTTGGCCTGGTACCGCTCGGCCG
AGCTCAAGCACGGGCGTATTTGCATGTTGGCAGCCCTTGGGTTGTTCGTC
CAATCTGCCTTCCACTTGCCGGACGATGTGTTCAGCAACCCCAAGGGCCT
TGATGCTCTCTTCCAGGTGTCGGCGGAGCGGCCTCAGGCGATTGCTCAGA
TTTTGATTGCGATCGGCGCGATTGAAGTTGCAGGTTTGGCAGCGAACGAG
GGAAAGGCCCCGGGGGATTTTGGATTTGACCCCCTCAACCTGGCGCCCAA
GACGGAGGATGCGTTCAACGAGTTGCAGTTGAAGGAGATCAAGAACGGAC
GATTGGCGATGGTGTCGGTGGCGGGCATGCTGATCCAAGAGGCGCTCACG
AACCAGGGTGTGCTTGAGCAGATCAACAGCGGCCACTTGAGCCCCTTCAA
TGACGGCCAGGGTGCCTTCTAAGTTTTTCATGTCTCCCTCCACCGCCAGG
GCTGCTCCTGCTGCCCGCATCCTGCGTCTAAAACTATAGACGCTATATAC
GTAAAGTGCAAGCCACAACGACGATGGGAATGACAGATATGAAAAGACTT
CGAAAGAGAGACTCATAGAACATGAAAGAAGAATTTGGAGGAAGAGCGAA
GAAGGGGTGCATAACGTGAAGGTAGAGGATACATACGACGACGATAGGGG
GGTAGCGTGAGTGTGTGAGGGAAGGAGTTTGCGTTGGGTTGTTGGGCTTA
GGTCTTGGATGAATTACTTTCTTTTCTTTTTCCCTGTCTTCCTCCCGACC
TTGATTCCTGCCTTCCGCAGGCGCACGAGGTCGAAGAAGAAGACGGCGAT
AAAGAAGGGGAAGCAGGAATTGAGTTTGAAAACGAACGACCAGAAGAAGA
AAACCCGACATGTGATAACCGAGCGACTGAACCAGCACGCGACAAGCTAT
GGCAAGCGAAAATGCAAGCAAGATCTCCATTCCCCCTCCGCGATTTTGGA
TTTTTAAGGATGGTACTTCATTTTTTCCTGTCGTCCTTATATATATATAA
TAATAATGAGCTTTAGGTCATAATAGGCCGAAGGCAGCATCGTCGTCTTC
TCGTCGTCACATTTCGTCTACTTACCCATTCTATCTTGCTTATTTGCCTG
CCCCAAGATAAAACAAAAAATCAGTCTCTTGAGTTGACTTCCCAGCATCC
ATATCAAGTACATACACAACTTACTGCCTC

protein sequence of jgi.p|Nanoce1779_2|586376

>mRNA_4064-protein ID=mRNA_4064-protein|Name=jgi.p|Nanoce1779_2|586376|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MKTSLVTLALAAVPASAFMGGFMGKNFAAPTKASPATPTTMFLNFGKKGG
VSVPKPAGKAAPAKVTPKRAAAAVKKAAPVKKAAAAAVKKAAPVKKAATA
AVKKAVPVKKVAAPLSNPDFAGGLIGSDVEAIRFDPWNLAAERDPEGLAW
YRSAELKHGRICMLAALGLFVQSAFHLPDDVFSNPKGLDALFQVSAERPQ
AIAQILIAIGAIEVAGLAANEGKAPGDFGFDPLNLAPKTEDAFNELQLKE
IKNGRLAMVSVAGMLIQEALTNQGVLEQINSGHLSPFNDGQGAF*

mRNA from alignment at scaffold_8:752655..754522+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4064 ID=mRNA_4064|Name=jgi.p|Nanoce1779_2|586376|organism=Nannochloropsis oceanica|type=mRNA|length=1868bp|location=Sequence derived from alignment at scaffold_8:752655..754522+ (Nannochloropsis oceanica)
ACAGTTTTAATCCTTTCCAGACGACCCCCCCTTTAAGATGAAGACATCCC
TTGTTACCCTGGCCCTGGCTGCCGTCCCCGCCTCTGCCTTCATGGGTGGA
TTCATGGGCAAGAACTTCGCCGCACCCACTAAGGCTTCCCCTGCTACCCC
CACCACTATGTTCTTGAACTTCGGCAAGAAAGGCGGTGTGTCCGTCCCCA
AGCCCGCAGGCAAGGCCGCCCCGGCTAAGGTAACCCCTAAGAGGGCTGCA
GCCGCCGTCAAGAAGGCGGCGCCCGTCAAGAAGGCTGCAGCCGCCGCTGT
TAAAAAGGCGGCGCCCGTCAAGAAGGCTGCAACCGCCGCTGTTAAAAAGG
CGGCGCCCGTCAAGAAGGCTGCAACCGCCGCTGTCAAAAAGGCGGTGCCT
GTCAAGAAGGTGGCCGCACCCTTGTCTAACCCTGACTTTGCTGGTGGGTT
GATCGGCTCCGATGTGGAGGCCATTCGATTCGACCCCTGGAACCTAGCCG
CGGAGCGCGACCCCGAAGGCTTGGCCTGGTACCGCTCGGCCGAGCTCAAG
CACGGGCGTATTTGCATGTTGGCAGCCCTTGGGTTGTTCGTCCAATCTGC
CTTCCACTTGCCGGACGATGTGTTCAGCAACCCCAAGGGCCTTGATGCTC
TCTTCCAGGTGTCGGCGGAGCGGCCTCAGGCGATTGCTCAGATTTTGATT
GCGATCGGCGCGATTGAAGTTGCAGGTTTGGCAGCGAACGAGGGAAAGGC
CCCGGGGGATTTTGGATTTGACCCCCTCAACCTGGCGCCCAAGACGGAGG
ATGCGTTCAACGAGTTGCAGTTGAAGGAGATCAAGAACGGACGATTGGCG
ATGGTGTCGGTGGCGGGCATGCTGATCCAAGAGGCGCTCACGAACCAGGG
TGTGCTTGAGCAGATCAACAGGTCAGTTCAAGTAGGAAGACAGCCCAGGA
GTGGAGACAAGGGCGAATGGACAGGAAGGAGAAACAGTGGGTATGACATT
TTTCATGCGCATACATACACCAACACTCGCCAACCCACTTCCCCTTTCTC
CCCTTCCTCTCTAACAGCGGCCACTTGAGCCCCTTCAATGACGGCCAGGG
TGCCTTCTAAGTTTTTCATGTCTCCCTCCACCGCCAGGGCTGCTCCTGCT
GCCCGCATCCTGCGTCTAAAACTATAGACGCTATATACGTAAAGTGCAAG
CCACAACGACGATGGGAATGACAGATATGAAAAGACTTCGAAAGAGAGAC
TCATAGAACATGAAAGAAGAATTTGGAGGAAGAGCGAAGAAGGGGTGCAT
AACGTGAAGGTAGAGGATACATACGACGACGATAGGGGGGTAGCGTGAGT
GTGTGAGGGAAGGAGTTTGCGTTGGGTTGTTGGGCTTAGGTCTTGGATGA
ATTACTTTCTTTTCTTTTTCCCTGTCTTCCTCCCGACCTTGATTCCTGCC
TTCCGCAGGCGCACGAGGTCGAAGAAGAAGACGGCGATAAAGAAGGGGAA
GCAGGAATTGAGTTTGAAAACGAACGACCAGAAGAAGAAAACCCGACATG
TGATAACCGAGCGACTGAACCAGCACGCGACAAGCTATGGCAAGCGAAAA
TGCAAGCAAGATCTCCATTCCCCCTCCGCGATTTTGGATTTTTAAGGATG
GTACTTCATTTTTTCCTGTCGTCCTTATATATATATAATAATAATGAGCT
TTAGGTCATAATAGGCCGAAGGCAGCATCGTCGTCTTCTCGTCGTCACAT
TTCGTCTACTTACCCATTCTATCTTGCTTATTTGCCTGCCCCAAGATAAA
ACAAAAAATCAGTCTCTTGAGTTGACTTCCCAGCATCCATATCAAGTACA
TACACAACTTACTGCCTC

Coding sequence (CDS) from alignment at scaffold_8:752655..754522+

>mRNA_4064 ID=mRNA_4064|Name=jgi.p|Nanoce1779_2|586376|organism=Nannochloropsis oceanica|type=CDS|length=2655bp|location=Sequence derived from alignment at scaffold_8:752655..754522+ (Nannochloropsis oceanica)
ATGAAGACATCCCTTGTTACCCTGGCCCTGGCTGCCGTCCCCGCCTCTGC
CTTCATGGGTGGATTCATGGGCAAGAACTTCGCCGCACCCACTAAGGCTT
CCCCTGCTACCCCCACCACTATGTTCTTGAACTTCGGCAAGAAAGGCGGT
GTGTCCGTCCCCAAGCCCGCAGGCAAGGCCGCCCCGGCTAAGGTAACCCC
TAAGAGGGCTGCAGCCGCCGTCAAGAAGGCGGCGCCCGTCAAGAAGGCTG
CAGCCGCCGCTGTTAAAAAGGCGGCGCCCGTCAAGAAGGCTGCAACCGCC
GCTGTTAAAAAGGCGGTGCCTGTCAAGAAGGTGGCCGCACCCTTGTCTAA
CCCTGACTTTGCTGGTGGGTTGATCGGCTCCGATGTGGAGGCCATTCGAT
TCGACCCCTGGAACCTAGCCGCGGAGCGCGACCCCGAAGGCTTGGCCTGG
TACCGCTCGGCCGAGCTCAAGCACGGGCGTATTTGCATGTTGGCAGCCCT
TGGGTTGTTCGTCCAATCTGCCTTCCACTTGCCGGACGATGTGTTCAGCA
ACCCCAAGGGCCTTGATGCTCTCTTCCAGGTGTCGGCGGAGCGGCCTCAG
GCGATTGCTCAGATTTTGATTGCGATCGGCGCGATTGAAGTTGCAGGTTT
GGCAGCGAACGAGGGAAAGGCCCCGGGGGATTTTGGATTTGACCCCCTCA
ACCTGGCGCCCAAGACGGAGGATGCGTTCAACGAGTTGCAGTTGAAGGAG
ATCAAGAACGGACGATTGGCGATGGTGTCGGTGGCGGGCATGCTGATCCA
AGAGGCGCTCACGAACCAGGGTGTGCTTGAGCAGATCAACAGCGGCCACT
TGAGCCCCTTCAATGACGGCCAGGGTGCCTTCTAAATGAAGACATCCCTT
GTTACCCTGGCCCTGGCTGCCGTCCCCGCCTCTGCCTTCATGGGTGGATT
CATGGGCAAGAACTTCGCCGCACCCACTAAGGCTTCCCCTGCTACCCCCA
CCACTATGTTCTTGAACTTCGGCAAGAAAGGCGGTGTGTCCGTCCCCAAG
CCCGCAGGCAAGGCCGCCCCGGCTAAGGTAACCCCTAAGAGGGCTGCAGC
CGCCGTCAAGAAGGCGGCGCCCGTCAAGAAGGCTGCAGCCGCCGCTGTTA
AAAAGGCGGCGCCCGTCAAGAAGGCTGCAACCGCCGCTGTTAAAAAGGCG
GTGCCTGTCAAGAAGGTGGCCGCACCCTTGTCTAACCCTGACTTTGCTGG
TGGGTTGATCGGCTCCGATGTGGAGGCCATTCGATTCGACCCCTGGAACC
TAGCCGCGGAGCGCGACCCCGAAGGCTTGGCCTGGTACCGCTCGGCCGAG
CTCAAGCACGGGCGTATTTGCATGTTGGCAGCCCTTGGGTTGTTCGTCCA
ATCTGCCTTCCACTTGCCGGACGATGTGTTCAGCAACCCCAAGGGCCTTG
ATGCTCTCTTCCAGGTGTCGGCGGAGCGGCCTCAGGCGATTGCTCAGATT
TTGATTGCGATCGGCGCGATTGAAGTTGCAGGTTTGGCAGCGAACGAGGG
AAAGGCCCCGGGGGATTTTGGATTTGACCCCCTCAACCTGGCGCCCAAGA
CGGAGGATGCGTTCAACGAGTTGCAGTTGAAGGAGATCAAGAACGGACGA
TTGGCGATGGTGTCGGTGGCGGGCATGCTGATCCAAGAGGCGCTCACGAA
CCAGGGTGTGCTTGAGCAGATCAACAGCGGCCACTTGAGCCCCTTCAATG
ACGGCCAGGGTGCCTTCTAAATGAAGACATCCCTTGTTACCCTGGCCCTG
GCTGCCGTCCCCGCCTCTGCCTTCATGGGTGGATTCATGGGCAAGAACTT
CGCCGCACCCACTAAGGCTTCCCCTGCTACCCCCACCACTATGTTCTTGA
ACTTCGGCAAGAAAGGCGGTGTGTCCGTCCCCAAGCCCGCAGGCAAGGCC
GCCCCGGCTAAGGTAACCCCTAAGAGGGCTGCAGCCGCCGTCAAGAAGGC
GGCGCCCGTCAAGAAGGCTGCAGCCGCCGCTGTTAAAAAGGCGGCGCCCG
TCAAGAAGGCTGCAACCGCCGCTGTTAAAAAGGCGGTGCCTGTCAAGAAG
GTGGCCGCACCCTTGTCTAACCCTGACTTTGCTGGTGGGTTGATCGGCTC
CGATGTGGAGGCCATTCGATTCGACCCCTGGAACCTAGCCGCGGAGCGCG
ACCCCGAAGGCTTGGCCTGGTACCGCTCGGCCGAGCTCAAGCACGGGCGT
ATTTGCATGTTGGCAGCCCTTGGGTTGTTCGTCCAATCTGCCTTCCACTT
GCCGGACGATGTGTTCAGCAACCCCAAGGGCCTTGATGCTCTCTTCCAGG
TGTCGGCGGAGCGGCCTCAGGCGATTGCTCAGATTTTGATTGCGATCGGC
GCGATTGAAGTTGCAGGTTTGGCAGCGAACGAGGGAAAGGCCCCGGGGGA
TTTTGGATTTGACCCCCTCAACCTGGCGCCCAAGACGGAGGATGCGTTCA
ACGAGTTGCAGTTGAAGGAGATCAAGAACGGACGATTGGCGATGGTGTCG
GTGGCGGGCATGCTGATCCAAGAGGCGCTCACGAACCAGGGTGTGCTTGA
GCAGATCAACAGCGGCCACTTGAGCCCCTTCAATGACGGCCAGGGTGCCT
TCTAA

Synonyms

Publications