jgi.p|Nanoce1779_2|586371, mRNA_4063 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586371
Unique NamemRNA_4063
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1157
Alignment locationscaffold_8:750816..751972 +

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Properties
Property NameValue
TranscriptId586457
TrackFilteredModels2
ProteinId586371
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:750816..751972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586371gene_4063Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586371mRNA_4063-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4063CDS_4063Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4063 ID=mRNA_4063|Name=jgi.p|Nanoce1779_2|586371|organism=Nannochloropsis oceanica|type=mRNA|length=1157bp
CAGGCCAAAATTCCAGGATAGGAAGCTCAACAAATTTTGATTATGGATTT
AGACGGGAAGTGGCACTGGGTCCGCCGGAAATTGCCTAGGCGTCTCATTC
CTCCTGGCGACCTCTTTGGAAATGCTGACGGACGAGGCATGATCTCCGGG
CAGCTCAATATTTCGCAAGGCGAGTCACCGAGCCCGCAGCTGCTGAGCCA
GGAAGGAGTGGAAAGAAATGTTACCACTGCAGCTGCACTAGCTTCTCGTC
GAGGCGACAGCTTTGGGCAACAACAAAGCGTCCGACGGAAAGGATCACCC
AAATCCCCTCCGCGCCGCGTCATCCTCAACCAAAAGCTGGAGCGTGTACA
GGCCGCGTTAAAAAGCCCCTCTGCCATGGGCTATGGGGAAGGTAGGAAAA
CAAGTAGCGGAGGGAGCCGTGATATTAGCGGCGCGAGGGCCGACGAGGAG
GAAGAGAAGGAGGACATGGAGGACCGGAGGAGGATCCTTTTGGCCGCACT
CATGGATGTGGACGGTACCAAAAAGCAACGACAAGGAGCATCGGCGAAGA
TACGATATTCCTCACCTTCGATGTTGTTAACCCGCAAACATGTAGGACGG
GCGGGCACCATTAGCGTGATAACTGGAAGCTCCCAGGGGAGCGGCGAGGG
GGCAGCTAAATCAAGAGATTCAGGGAAGAGAGATTCCACACATTTTCAAC
GTCATGGCTCTGTGAATGGAACCGTTATCATTGATTCGACAAGCAGCAGC
TCTGGCAACATGGCATCTACCGGCAGCGGTGGTGCGCGCGGGATGAAGGG
GGCCACTTACCCTGCTAGTGGTGCCGTCGAGCAAGAGTCTGGAGGCATCC
AACTGAAGCCGCCCATCCCCATCGACCATCGACGAAAGTCCAGATTGCCG
GATTATTTTGGAGAGGGTGATGAAAAGAGACTGGGCTTTAACATTCGCAA
TTTACACCTTTTCCCCCCGCTGCGTACCCCCCTGGAGGGAGAGAAAGACG
AAGGAAGACGCGAGAGCGGGGCCCCGACGTCGACGGCAGCACCAATAGAC
CTCCAAATGTGAGTCATAGTGAGAATTATATCGACTTCATTGCAACGAAT
AAGGAAAGAGGAAAGCCAAACAAAAAAGAAGGAAGCACGAAGTGAACAAA
AAGGGGC
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protein sequence of jgi.p|Nanoce1779_2|586371

>mRNA_4063-protein ID=mRNA_4063-protein|Name=jgi.p|Nanoce1779_2|586371|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MDLDGKWHWVRRKLPRRLIPPGDLFGNADGRGMISGQLNISQGESPSPQL
LSQEGVERNVTTAAALASRRGDSFGQQQSVRRKGSPKSPPRRVILNQKLE
RVQAALKSPSAMGYGEGRKTSSGGSRDISGARADEEEEKEDMEDRRRILL
AALMDVDGTKKQRQGASAKIRYSSPSMLLTRKHVGRAGTISVITGSSQGS
GEGAAKSRDSGKRDSTHFQRHGSVNGTVIIDSTSSSSGNMASTGSGGARG
MKGATYPASGAVEQESGGIQLKPPIPIDHRRKSRLPDYFGEGDEKRLGFN
IRNLHLFPPLRTPLEGEKDEGRRESGAPTSTAAPIDLQM*
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mRNA from alignment at scaffold_8:750816..751972+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4063 ID=mRNA_4063|Name=jgi.p|Nanoce1779_2|586371|organism=Nannochloropsis oceanica|type=mRNA|length=1157bp|location=Sequence derived from alignment at scaffold_8:750816..751972+ (Nannochloropsis oceanica)
CAGGCCAAAATTCCAGGATAGGAAGCTCAACAAATTTTGATTATGGATTT
AGACGGGAAGTGGCACTGGGTCCGCCGGAAATTGCCTAGGCGTCTCATTC
CTCCTGGCGACCTCTTTGGAAATGCTGACGGACGAGGCATGATCTCCGGG
CAGCTCAATATTTCGCAAGGCGAGTCACCGAGCCCGCAGCTGCTGAGCCA
GGAAGGAGTGGAAAGAAATGTTACCACTGCAGCTGCACTAGCTTCTCGTC
GAGGCGACAGCTTTGGGCAACAACAAAGCGTCCGACGGAAAGGATCACCC
AAATCCCCTCCGCGCCGCGTCATCCTCAACCAAAAGCTGGAGCGTGTACA
GGCCGCGTTAAAAAGCCCCTCTGCCATGGGCTATGGGGAAGGTAGGAAAA
CAAGTAGCGGAGGGAGCCGTGATATTAGCGGCGCGAGGGCCGACGAGGAG
GAAGAGAAGGAGGACATGGAGGACCGGAGGAGGATCCTTTTGGCCGCACT
CATGGATGTGGACGGTACCAAAAAGCAACGACAAGGAGCATCGGCGAAGA
TACGATATTCCTCACCTTCGATGTTGTTAACCCGCAAACATGTAGGACGG
GCGGGCACCATTAGCGTGATAACTGGAAGCTCCCAGGGGAGCGGCGAGGG
GGCAGCTAAATCAAGAGATTCAGGGAAGAGAGATTCCACACATTTTCAAC
GTCATGGCTCTGTGAATGGAACCGTTATCATTGATTCGACAAGCAGCAGC
TCTGGCAACATGGCATCTACCGGCAGCGGTGGTGCGCGCGGGATGAAGGG
GGCCACTTACCCTGCTAGTGGTGCCGTCGAGCAAGAGTCTGGAGGCATCC
AACTGAAGCCGCCCATCCCCATCGACCATCGACGAAAGTCCAGATTGCCG
GATTATTTTGGAGAGGGTGATGAAAAGAGACTGGGCTTTAACATTCGCAA
TTTACACCTTTTCCCCCCGCTGCGTACCCCCCTGGAGGGAGAGAAAGACG
AAGGAAGACGCGAGAGCGGGGCCCCGACGTCGACGGCAGCACCAATAGAC
CTCCAAATGTGAGTCATAGTGAGAATTATATCGACTTCATTGCAACGAAT
AAGGAAAGAGGAAAGCCAAACAAAAAAGAAGGAAGCACGAAGTGAACAAA
AAGGGGC
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Coding sequence (CDS) from alignment at scaffold_8:750816..751972+

>mRNA_4063 ID=mRNA_4063|Name=jgi.p|Nanoce1779_2|586371|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at scaffold_8:750816..751972+ (Nannochloropsis oceanica)
ATGGATTTAGACGGGAAGTGGCACTGGGTCCGCCGGAAATTGCCTAGGCG
TCTCATTCCTCCTGGCGACCTCTTTGGAAATGCTGACGGACGAGGCATGA
TCTCCGGGCAGCTCAATATTTCGCAAGGCGAGTCACCGAGCCCGCAGCTG
CTGAGCCAGGAAGGAGTGGAAAGAAATGTTACCACTGCAGCTGCACTAGC
TTCTCGTCGAGGCGACAGCTTTGGGCAACAACAAAGCGTCCGACGGAAAG
GATCACCCAAATCCCCTCCGCGCCGCGTCATCCTCAACCAAAAGCTGGAG
CGTGTACAGGCCGCGTTAAAAAGCCCCTCTGCCATGGGCTATGGGGAAGG
TAGGAAAACAAGTAGCGGAGGGAGCCGTGATATTAGCGGCGCGAGGGCCG
ACGAGGAGGAAGAGAAGGAGGACATGGAGGACCGGAGGAGGATCCTTTTG
GCCGCACTCATGGATGTGGACGGTACCAAAAAGCAACGACAAGGAGCATC
GGCGAAGATACGATATTCCTCACCTTCGATGTTGTTAACCCGCAAACATG
TAGGACGGGCGGGCACCATTAGCGTGATAACTGGAAGCTCCCAGGGGAGC
GGCGAGGGGGCAGCTAAATCAAGAGATTCAGGGAAGAGAGATTCCACACA
TTTTCAACGTCATGGCTCTGTGAATGGAACCGTTATCATTGATTCGACAA
GCAGCAGCTCTGGCAACATGGCATCTACCGGCAGCGGTGGTGCGCGCGGG
ATGAAGGGGGCCACTTACCCTGCTAGTGGTGCCGTCGAGCAAGAGTCTGG
AGGCATCCAACTGAAGCCGCCCATCCCCATCGACCATCGACGAAAGTCCA
GATTGCCGGATTATTTTGGAGAGGGTGATGAAAAGAGACTGGGCTTTAAC
ATTCGCAATTTACACCTTTTCCCCCCGCTGCGTACCCCCCTGGAGGGAGA
GAAAGACGAAGGAAGACGCGAGAGCGGGGCCCCGACGTCGACGGCAGCAC
CAATAGACCTCCAAATGTGA
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Synonyms
Publications