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Properties
| Property Name | Value |
|---|
| TranscriptId | 423467 |
| Track | FilteredModels2 |
| ProteinId | 423381 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:746165..748260 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4061 ID=mRNA_4061|Name=jgi.p|Nanoce1779_2|423381|organism=Nannochloropsis oceanica|type=mRNA|length=1735bp
TTCTTGTCTCTTGCTTCTTTTCAGGACGTGCTCCTCTTGACCTCCTCCCC
GGTGTCCGTCTCTAAAGCGCGAGATAATCGGACGCTTTGGCTATTACCCC
TACCGTACTCCTCACTTCAAAACTCACAACCCGCCCATGCACCCATAAAC
ACGACATAAGCAACTTATGCACGCTGGTATATGGGTTGCTTGTCCGCAGC
ACCTCTCCTCGTCGCGCACGTAAGCCTCCAAGTTGCTGATCGCGCCAACA
CGGGCCATAGACTCTAGCTAGCAGCACAATGTCGGAATGCAACCATGCCA
CTGTAACCGCGCCGATCCCGCCTGCTTCAAGGGCGTCATCATGCTCCGTT
TCTCCACCGCGAGGCAGCGCCCTGCGGGAATCCCACATGTTTGCCTCCAG
CGGCACCACCATTTCCACAACTACAACCAACGGGAACGGCCTCTCCTCCA
CCGCCGCGTTAATGGCCTATAAAGCCTATGAGGTGGAGGCCGAGGATGCA
GGCATGGGCAGCGGTATTCAAGGGCTCCAGTCCTCTTCCGTAATTACCCC
TCTCGTGGCCAGTTTAACCTCTCCCGTGCAGCACCAGGACCACCAACAGC
AGCAGCCGCAGGCGCATCAACAACAACAGCAACAGCAAGCATATCAATAC
CACTACCAGTTTCCGCCTTACTCATCCCAACAACAGCATCAGCAGTATCA
GCAGTATCAGCAGCAGCAGCTACGACAACCTCCTCCACAATACCAGCAGC
AACAGCACCATCAACAGCACCAACAACAGCAGCAGCAACACCAACATCAA
CCATCCTTTCAGCACTATCAGCAGCAGCAGTTACCACTTCCACCGCAGCA
GCAACAGGAGCCGTCGCCAGACCCTACCTCAGATTCAATGCAGTACATGA
AGCCCGACCAACTAGTAGAAAACCTTGTCGAACAATTCTGGGCCTCCGAG
GCCACCAGAATCCGCCAAATTGACCCCTCGGCCACGGATCTCCGCCTGCA
AGAGCTGCCCCTCGCCCGGGTGAAGAAAGTCATGAAACAAGACGAAGAAG
TGCATGGGTCCCCTAAAGTCCTTATCAGCATGGAAGCCTTAGTAATAATG
GCCAAAGCATGTGAGCTCTTTCTGTTGGAACTTACTTTAAGAGGATGGCA
GATGACAAAGCATAATGCCCGGCGGACCCTGCAAAGAGTAGATTTGGCCC
AAGCAATCATAAAGTGCGATGTGTTTGATTTTTTGATTGATATTGTCCCG
AGGGATCAGGCCATTCCCACGACACGGGCTTACACCAGGCATGCCCCTGC
AATTGATGCTGTAGCTATTGCTACTGATGATGACATAGGGGCAGAAGAGG
ACGGCGACGAGTTCATTGAGGAAGAGAAAGAGGTAAAGGGGAGTGGAACT
GATTCTGCTTATGGTAGGGATAGTGAAAAAAGAGGAGAAAGAAGGGGAGG
GGGAGTGGTGGAAGTAATAGAAGAGATTAGAATGCGGTAAGAAGAAAGGT
GGAGAGATGGATGGAGTGGAGAGGGAGGCATGTAGCACTGTGGGAGGCAC
AAGGGTAGGACGATGACATTGGCGATGACGACAATGACGACAGCAGAAGG
TAGGAAAGACAAATAGACTATGCTATGACCAAATATGACAGACAGTAATG
CGGGGAAGAGGAGAGACGAAGGACTGAGATTGGAAACCAAAAAACAGTCT
GGTCCAATACCAGGTAGCGAAAGCTAGACGCTTGT back to topprotein sequence of jgi.p|Nanoce1779_2|423381 >mRNA_4061-protein ID=mRNA_4061-protein|Name=jgi.p|Nanoce1779_2|423381|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MSECNHATVTAPIPPASRASSCSVSPPRGSALRESHMFASSGTTISTTTT
NGNGLSSTAALMAYKAYEVEAEDAGMGSGIQGLQSSSVITPLVASLTSPV
QHQDHQQQQPQAHQQQQQQQAYQYHYQFPPYSSQQQHQQYQQYQQQQLRQ
PPPQYQQQQHHQQHQQQQQQHQHQPSFQHYQQQQLPLPPQQQQEPSPDPT
SDSMQYMKPDQLVENLVEQFWASEATRIRQIDPSATDLRLQELPLARVKK
VMKQDEEVHGSPKVLISMEALVIMAKACELFLLELTLRGWQMTKHNARRT
LQRVDLAQAIIKCDVFDFLIDIVPRDQAIPTTRAYTRHAPAIDAVAIATD
DDIGAEEDGDEFIEEEKEVKGSGTDSAYGRDSEKRGERRGGGVVEVIEEI
RMR* back to topmRNA from alignment at scaffold_8:746165..748260- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4061 ID=mRNA_4061|Name=jgi.p|Nanoce1779_2|423381|organism=Nannochloropsis oceanica|type=mRNA|length=2096bp|location=Sequence derived from alignment at scaffold_8:746165..748260- (Nannochloropsis oceanica)
TTCTTGTCTCTTGCTTCTTTTCAGGACGTGCTCCTCTTGACCTCCTCCCC
GGTGTCCGTCTCTAAAGCGCGAGATAATCGGACGCTTTGGCTATTACCCC
TACCGTACTCCTCACTTCAAAACTCACAACCCGCCCATGCACCCATAAAC
ACGACATAAGCAACTTATGCACGCTGGTATATGGGTTGCTTGTCCGCAGC
ACCTCTCCTCGTCGCGCACGTAAGCCTCCAAGTTGCTGATCGCGCCAACA
CGGGCCATAGACTCTAGCTAGCAGCACAATGTCGGAATGCAACCATGCCA
CTGTAACCGCGCCGATCCCGCCTGCTTCAAGGGCGTCATCATGCTCCGTT
TCTCCACCGCGAGGCAGCGCCCTGCGGGAATCCCACATGTTTGCCTCCAG
CGGCACCACCATTTCCACAACTACAACCAACGGGAACGGCCTCTCCTCCA
CCGCCGCGTTAATGGCCTATAAAGCCTATGAGGTGGAGGCCGAGGATGCA
GGCATGGGCAGCGGTATTCAAGGGCTCCAGTCCTCTTCCGTAATTACCCC
TCTCGTGGCCAGTTTAACCTCTCCCGTGCAGCACCAGGACCACCAACAGC
AGCAGCCGCAGGCGCATCAACAACAACAGCAACAGCAAGCATATCAATAC
CACTACCAGTTTCCGCCTTACTCATCCCAACAACAGCATCAGCAGTATCA
GCAGTATCAGCAGCAGCAGCTACGACAACCTCCTCCACAATACCAGCAGC
AACAGCACCATCAACAGCACCAACAACAGCAGCAGCAACACCAACATCAA
CCATCCTTTCAGCACTATCAGCAGCAGCAGTTACCACTTCCACCGCAGCA
GCAACAGGAGCCGTCGCCAGACCCTACCTCAGATTCAATGCAGTACATGA
AGCCCGACCAACTAGTAGGTAGGTCAGTTCACCCACTAAAATCTATTTAT
TTTTCTCTTTCCTTATTTTTGCATCCTCGATAATTACCTACAATTTTTAT
TGCTGTTACGAATAGAAAACCTTGTCGAACAATTCTGGGCCTCCGAGGCC
ACCAGAATCCGCCAAATTGACCCCTCGGCCACGGATCTCCGCCTGCAAGA
GCTGCCCCTCGCCCGGGTGAAGAAAGTCATGAAACAAGACGAAGAAGTGC
ATGGGTCCCCTAAAGTCCTTATCAGCATGGAAGCCTTAGTAATAATGGCC
AAAGCATGTGAGCTCTTTCTGTTGGAACTTACTTTAAGAGGATGGCAGAT
GACAAAGCATAATGCCCGGCGGACCCTGCAAAGAGTAGATTTGGCCCAAG
CAATCATAAAGTGCGATGTGTTTGATTTTTTGATTGATATTGTCCCGAGG
GATCAGGCCATTCCCACGACACGGGCTTACACCAGGCATGCCCCTGCAAT
TGATGCTGTAGCTATTGCTACTGATGATGACATAGGGGCAGAAGCGGATG
GGAAAGAGGAAGTGGGGGGAAAAGGGAGGGAGGGGAGAGTGGATGGTGGT
GCTACTGCAGTGGCACAGGGAGTGGAATGTGGGATGGGGAGGGAGGAGGG
GGGGCGGGGAGGGGAAGTTGTGGAAAAGAGGGAGTAGAAAGTGGAGGAGG
AGGAGGGGGGGAAGAGGAGGACGAGGAGGAGGAGGAGGAGGAGAAGGAAG
AGGATGGGACGGAGAAGAGGAAGGAGAGGAGGGGGGGGGAAGGAGGAGGA
GGAGGAGGAGGACGGCGACGAGTTCATTGAGGAAGAGAAAGAGGTAAAGG
GGAGTGGAACTGATTCTGCTTATGGTAGGGATAGTGAAAAAAGAGGAGAA
AGAAGGGGAGGGGGAGTGGTGGAAGTAATAGAAGAGATTAGAATGCGGTA
AGAAGAAAGGTGGAGAGATGGATGGAGTGGAGAGGGAGGCATGTAGCACT
GTGGGAGGCACAAGGGTAGGACGATGACATTGGCGATGACGACAATGACG
ACAGCAGAAGGTAGGAAAGACAAATAGACTATGCTATGACCAAATATGAC
AGACAGTAATGCGGGGAAGAGGAGAGACGAAGGACTGAGATTGGAAACCA
AAAAACAGTCTGGTCCAATACCAGGTAGCGAAAGCTAGACGCTTGT back to topCoding sequence (CDS) from alignment at scaffold_8:746165..748260- >mRNA_4061 ID=mRNA_4061|Name=jgi.p|Nanoce1779_2|423381|organism=Nannochloropsis oceanica|type=CDS|length=3636bp|location=Sequence derived from alignment at scaffold_8:746165..748260- (Nannochloropsis oceanica)
GAGGACGGCGACGAGTTCATTGAGGAAGAGAAAGAGGTAAAGGGGAGTGG
AACTGATTCTGCTTATGGTAGGGATAGTGAAAAAAGAGGAGAAAGAAGGG
GAGGGGGAGTGGTGGAAGTAATAGAAGAGATTAGAATGCGGTAAAAAACC
TTGTCGAACAATTCTGGGCCTCCGAGGCCACCAGAATCCGCCAAATTGAC
CCCTCGGCCACGGATCTCCGCCTGCAAGAGCTGCCCCTCGCCCGGGTGAA
GAAAGTCATGAAACAAGACGAAGAAGTGCATGGGTCCCCTAAAGTCCTTA
TCAGCATGGAAGCCTTAGTAATAATGGCCAAAGCATGTGAGCTCTTTCTG
TTGGAACTTACTTTAAGAGGATGGCAGATGACAAAGCATAATGCCCGGCG
GACCCTGCAAAGAGTAGATTTGGCCCAAGCAATCATAAAGTGCGATGTGT
TTGATTTTTTGATTGATATTGTCCCGAGGGATCAGGCCATTCCCACGACA
CGGGCTTACACCAGGCATGCCCCTGCAATTGATGCTGTAGCTATTGCTAC
TGATGATGACATAGGGGCAGAAATGTCGGAATGCAACCATGCCACTGTAA
CCGCGCCGATCCCGCCTGCTTCAAGGGCGTCATCATGCTCCGTTTCTCCA
CCGCGAGGCAGCGCCCTGCGGGAATCCCACATGTTTGCCTCCAGCGGCAC
CACCATTTCCACAACTACAACCAACGGGAACGGCCTCTCCTCCACCGCCG
CGTTAATGGCCTATAAAGCCTATGAGGTGGAGGCCGAGGATGCAGGCATG
GGCAGCGGTATTCAAGGGCTCCAGTCCTCTTCCGTAATTACCCCTCTCGT
GGCCAGTTTAACCTCTCCCGTGCAGCACCAGGACCACCAACAGCAGCAGC
CGCAGGCGCATCAACAACAACAGCAACAGCAAGCATATCAATACCACTAC
CAGTTTCCGCCTTACTCATCCCAACAACAGCATCAGCAGTATCAGCAGTA
TCAGCAGCAGCAGCTACGACAACCTCCTCCACAATACCAGCAGCAACAGC
ACCATCAACAGCACCAACAACAGCAGCAGCAACACCAACATCAACCATCC
TTTCAGCACTATCAGCAGCAGCAGTTACCACTTCCACCGCAGCAGCAACA
GGAGCCGTCGCCAGACCCTACCTCAGATTCAATGCAGTACATGAAGCCCG
ACCAACTAGTAGGAGGACGGCGACGAGTTCATTGAGGAAGAGAAAGAGGT
AAAGGGGAGTGGAACTGATTCTGCTTATGGTAGGGATAGTGAAAAAAGAG
GAGAAAGAAGGGGAGGGGGAGTGGTGGAAGTAATAGAAGAGATTAGAATG
CGGTAAAAAACCTTGTCGAACAATTCTGGGCCTCCGAGGCCACCAGAATC
CGCCAAATTGACCCCTCGGCCACGGATCTCCGCCTGCAAGAGCTGCCCCT
CGCCCGGGTGAAGAAAGTCATGAAACAAGACGAAGAAGTGCATGGGTCCC
CTAAAGTCCTTATCAGCATGGAAGCCTTAGTAATAATGGCCAAAGCATGT
GAGCTCTTTCTGTTGGAACTTACTTTAAGAGGATGGCAGATGACAAAGCA
TAATGCCCGGCGGACCCTGCAAAGAGTAGATTTGGCCCAAGCAATCATAA
AGTGCGATGTGTTTGATTTTTTGATTGATATTGTCCCGAGGGATCAGGCC
ATTCCCACGACACGGGCTTACACCAGGCATGCCCCTGCAATTGATGCTGT
AGCTATTGCTACTGATGATGACATAGGGGCAGAAATGTCGGAATGCAACC
ATGCCACTGTAACCGCGCCGATCCCGCCTGCTTCAAGGGCGTCATCATGC
TCCGTTTCTCCACCGCGAGGCAGCGCCCTGCGGGAATCCCACATGTTTGC
CTCCAGCGGCACCACCATTTCCACAACTACAACCAACGGGAACGGCCTCT
CCTCCACCGCCGCGTTAATGGCCTATAAAGCCTATGAGGTGGAGGCCGAG
GATGCAGGCATGGGCAGCGGTATTCAAGGGCTCCAGTCCTCTTCCGTAAT
TACCCCTCTCGTGGCCAGTTTAACCTCTCCCGTGCAGCACCAGGACCACC
AACAGCAGCAGCCGCAGGCGCATCAACAACAACAGCAACAGCAAGCATAT
CAATACCACTACCAGTTTCCGCCTTACTCATCCCAACAACAGCATCAGCA
GTATCAGCAGTATCAGCAGCAGCAGCTACGACAACCTCCTCCACAATACC
AGCAGCAACAGCACCATCAACAGCACCAACAACAGCAGCAGCAACACCAA
CATCAACCATCCTTTCAGCACTATCAGCAGCAGCAGTTACCACTTCCACC
GCAGCAGCAACAGGAGCCGTCGCCAGACCCTACCTCAGATTCAATGCAGT
ACATGAAGCCCGACCAACTAGTAGGAGGACGGCGACGAGTTCATTGAGGA
AGAGAAAGAGGTAAAGGGGAGTGGAACTGATTCTGCTTATGGTAGGGATA
GTGAAAAAAGAGGAGAAAGAAGGGGAGGGGGAGTGGTGGAAGTAATAGAA
GAGATTAGAATGCGGTAAAAAACCTTGTCGAACAATTCTGGGCCTCCGAG
GCCACCAGAATCCGCCAAATTGACCCCTCGGCCACGGATCTCCGCCTGCA
AGAGCTGCCCCTCGCCCGGGTGAAGAAAGTCATGAAACAAGACGAAGAAG
TGCATGGGTCCCCTAAAGTCCTTATCAGCATGGAAGCCTTAGTAATAATG
GCCAAAGCATGTGAGCTCTTTCTGTTGGAACTTACTTTAAGAGGATGGCA
GATGACAAAGCATAATGCCCGGCGGACCCTGCAAAGAGTAGATTTGGCCC
AAGCAATCATAAAGTGCGATGTGTTTGATTTTTTGATTGATATTGTCCCG
AGGGATCAGGCCATTCCCACGACACGGGCTTACACCAGGCATGCCCCTGC
AATTGATGCTGTAGCTATTGCTACTGATGATGACATAGGGGCAGAAATGT
CGGAATGCAACCATGCCACTGTAACCGCGCCGATCCCGCCTGCTTCAAGG
GCGTCATCATGCTCCGTTTCTCCACCGCGAGGCAGCGCCCTGCGGGAATC
CCACATGTTTGCCTCCAGCGGCACCACCATTTCCACAACTACAACCAACG
GGAACGGCCTCTCCTCCACCGCCGCGTTAATGGCCTATAAAGCCTATGAG
GTGGAGGCCGAGGATGCAGGCATGGGCAGCGGTATTCAAGGGCTCCAGTC
CTCTTCCGTAATTACCCCTCTCGTGGCCAGTTTAACCTCTCCCGTGCAGC
ACCAGGACCACCAACAGCAGCAGCCGCAGGCGCATCAACAACAACAGCAA
CAGCAAGCATATCAATACCACTACCAGTTTCCGCCTTACTCATCCCAACA
ACAGCATCAGCAGTATCAGCAGTATCAGCAGCAGCAGCTACGACAACCTC
CTCCACAATACCAGCAGCAACAGCACCATCAACAGCACCAACAACAGCAG
CAGCAACACCAACATCAACCATCCTTTCAGCACTATCAGCAGCAGCAGTT
ACCACTTCCACCGCAGCAGCAACAGGAGCCGTCGCCAGACCCTACCTCAG
ATTCAATGCAGTACATGAAGCCCGACCAACTAGTAG back to top
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