jgi.p|Nanoce1779_2|577238, mRNA_406 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577238
Unique NamemRNA_406
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length945
Alignment locationscaffold_3:1004069..1005013 -

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Properties
Property NameValue
TranscriptId577324
TrackFilteredModels2
ProteinId577238
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1004069..1005013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577238gene_406Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577238mRNA_406-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_406CDS_406Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_406 ID=mRNA_406|Name=jgi.p|Nanoce1779_2|577238|organism=Nannochloropsis oceanica|type=mRNA|length=945bp
AGGAAGGGGATGAGGGGAGGGAGGAAGCGGTGAATGGGGAGGATTGGGAG
GAATGGCGATTGGAATTGAAGGCGTCGGGGATCAAGACGGCGGAGGAGGA
GGAGGAGGAGGAGAACAAGAAGAAGGCGGCGAAAGAGGCCAAGTCAATGG
AAGCTGGGCGTGGTGCTTATGAACCACGAGGGGAGTGGCAGTGGGGAGGG
AGTAGAGGAGGGAGGAGGGAGAGCGGTCGAGGCGGACGTGGTGGTTGGGA
CCGCTCTGGTGTTGAAGGAAGGGATCATGACGGACAGTATGGTAGGTCTG
GGCGAGGAGCAGGTGGTATAGGAAGGGAATATGACCGGCGTGCTAGTGGG
GCTGGGACTGGAGGCAGCAGCAGTTTTGCGGATCGGAATCGATTTGCGTC
GCCGACAGGTGGAGGGGGGCAGAGGTGGCCGTCTTCGGATAGTAATAATA
CAGGGAAGACGGAAAGAAGCGCTGGCGGTGCTGGCTCTGGAGCATTTGGG
CGAGGAGGAGGAGGGAGCAAGAGGGGTGGCGGGGTAGGAGGTCGGGGGGG
AGGAGAGAGAGGTGGGATGGGTGGGGTACGAGGACGAGGTCGTGGGATCG
GCGGGGGAAGGACAGGAGGAGAGAACAGGAGTGACTAGATCAGGAGTTTT
CTAGACGCACGGCAAAGCACGGCAAAGGACTAAACATATGCAAGAAACAA
AAACAAAAATCAAAAGCTCAAGCTTGCTCTCGTCGTCGTTCTCCGCAACG
GATGATCGGTGAGCCTGAAGGCCATGGCCACTCGACCATAACAAGCCCAC
CGCGTCCTCTGCGAACGCCGCAAATAGCCTGACGACTTCGAAAGCGATGT
CAATGAGCGGGTTCGTATGTACAGGTTTCGCAGTGGCTATTCGTTTAGTC
CTCTCTCAGCTCACTTGCGTCTTCTCGTGTGTGCTCCATCCTCAA
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protein sequence of jgi.p|Nanoce1779_2|577238

>mRNA_406-protein ID=mRNA_406-protein|Name=jgi.p|Nanoce1779_2|577238|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MEAGRGAYEPRGEWQWGGSRGGRRESGRGGRGGWDRSGVEGRDHDGQYGR
SGRGAGGIGREYDRRASGAGTGGSSSFADRNRFASPTGGGGQRWPSSDSN
NTGKTERSAGGAGSGAFGRGGGGSKRGGGVGGRGGGERGGMGGVRGRGRG
IGGGRTGGENRS
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mRNA from alignment at scaffold_3:1004069..1005013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_406 ID=mRNA_406|Name=jgi.p|Nanoce1779_2|577238|organism=Nannochloropsis oceanica|type=mRNA|length=945bp|location=Sequence derived from alignment at scaffold_3:1004069..1005013- (Nannochloropsis oceanica)
AGGAAGGGGATGAGGGGAGGGAGGAAGCGGTGAATGGGGAGGATTGGGAG
GAATGGCGATTGGAATTGAAGGCGTCGGGGATCAAGACGGCGGAGGAGGA
GGAGGAGGAGGAGAACAAGAAGAAGGCGGCGAAAGAGGCCAAGTCAATGG
AAGCTGGGCGTGGTGCTTATGAACCACGAGGGGAGTGGCAGTGGGGAGGG
AGTAGAGGAGGGAGGAGGGAGAGCGGTCGAGGCGGACGTGGTGGTTGGGA
CCGCTCTGGTGTTGAAGGAAGGGATCATGACGGACAGTATGGTAGGTCTG
GGCGAGGAGCAGGTGGTATAGGAAGGGAATATGACCGGCGTGCTAGTGGG
GCTGGGACTGGAGGCAGCAGCAGTTTTGCGGATCGGAATCGATTTGCGTC
GCCGACAGGTGGAGGGGGGCAGAGGTGGCCGTCTTCGGATAGTAATAATA
CAGGGAAGACGGAAAGAAGCGCTGGCGGTGCTGGCTCTGGAGCATTTGGG
CGAGGAGGAGGAGGGAGCAAGAGGGGTGGCGGGGTAGGAGGTCGGGGGGG
AGGAGAGAGAGGTGGGATGGGTGGGGTACGAGGACGAGGTCGTGGGATCG
GCGGGGGAAGGACAGGAGGAGAGAACAGGAGTGACTAGATCAGGAGTTTT
CTAGACGCACGGCAAAGCACGGCAAAGGACTAAACATATGCAAGAAACAA
AAACAAAAATCAAAAGCTCAAGCTTGCTCTCGTCGTCGTTCTCCGCAACG
GATGATCGGTGAGCCTGAAGGCCATGGCCACTCGACCATAACAAGCCCAC
CGCGTCCTCTGCGAACGCCGCAAATAGCCTGACGACTTCGAAAGCGATGT
CAATGAGCGGGTTCGTATGTACAGGTTTCGCAGTGGCTATTCGTTTAGTC
CTCTCTCAGCTCACTTGCGTCTTCTCGTGTGTGCTCCATCCTCAA
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Coding sequence (CDS) from alignment at scaffold_3:1004069..1005013-

>mRNA_406 ID=mRNA_406|Name=jgi.p|Nanoce1779_2|577238|organism=Nannochloropsis oceanica|type=CDS|length=488bp|location=Sequence derived from alignment at scaffold_3:1004069..1005013- (Nannochloropsis oceanica)
ATGGAAGCTGGGCGTGGTGCTTATGAACCACGAGGGGAGTGGCAGTGGGG
AGGGAGTAGAGGAGGGAGGAGGGAGAGCGGTCGAGGCGGACGTGGTGGTT
GGGACCGCTCTGGTGTTGAAGGAAGGGATCATGACGGACAGTATGGTAGG
TCTGGGCGAGGAGCAGGTGGTATAGGAAGGGAATATGACCGGCGTGCTAG
TGGGGCTGGGACTGGAGGCAGCAGCAGTTTTGCGGATCGGAATCGATTTG
CGTCGCCGACAGGTGGAGGGGGGCAGAGGTGGCCGTCTTCGGATAGTAAT
AATACAGGGAAGACGGAAAGAAGCGCTGGCGGTGCTGGCTCTGGAGCATT
TGGGCGAGGAGGAGGAGGGAGCAAGAGGGGTGGCGGGGTAGGAGGTCGGG
GGGGAGGAGAGAGAGGTGGGATGGGTGGGGTACGAGGACGAGGTCGTGGG
ATCGGCGGGGGAAGGACAGGAGGAGAGAACAGGAGTGA
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Synonyms
Publications