jgi.p|Nanoce1779_2|586331, mRNA_4058 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586331
Unique NamemRNA_4058
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2356
Alignment locationscaffold_8:734578..736933 -

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Properties
Property NameValue
TranscriptId586417
TrackFilteredModels2
ProteinId586331
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:734578..736933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586331gene_4058Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586331mRNA_4058-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4058CDS_4058Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4058 ID=mRNA_4058|Name=jgi.p|Nanoce1779_2|586331|organism=Nannochloropsis oceanica|type=mRNA|length=2356bp
ACAGCACAGTTTCTGGCACATTTTCCGTGTTGTATCCGAATCAAATCAAC
CGCGCCAGGAAGCTCTACTCAACCACGCCCTACTCGTCCAAGTAGCGGTC
TCTGTCACCCCCACCAAAAGGATGAGACACCCGCAACGACCCAGCCGCCG
CCAGGTGCGGTGCATTGCGCTAATGGTCTCAGCAAGCCTGCCTACCTTGT
CCTCCGCATTCGTGTGCCGGCCAAACAGCGGCGCCCTTTCCCCAACACTC
TCCATCTCTTCTGCCATCTCCCTTCCAAGGCGGACGGCAGCACGCACGTC
CATGCTCCCTGTGAACCTCGCTTCTCTGGATGTGTTGCTCGCCGAGTCCA
GTCTGGCGGTTGACATTCCCGTCTTGTCCCCAACCTCGGCCTTAGAAGCC
TTTGCAGTACTAACCGTGCCTCTCTTTCTATTCGCTGGCCTGCAACTCAC
CCGTCAAGACGACCGAAAGCCAAAAAACGCGGACGATCCCATCAATGAAA
TGAGCACCAATGATATCCTGACTAAACTATTCGTCGAAGTGGAGGGAAAG
GAGCCTACCTCCATGTTCTCCTCGTCTTCCACCGCCTCTCCCTTGATGCC
GGTCAAGCTCGAGGCCCGCGGTGGGGCAGGGGGAGGAAAGGGGTCGAGTG
TACTCGAGCGTCCGCCCGCGCCCTCCCCTGTCGATGAGGAGGTCCGCCAG
ACTAAGCTCCGGGCCTCCGAAGAGCAGGAACGGGCCAAGGCAGCTGCAGC
GGCAGCAGCTGTGACCAAGAGGAAGGAGGAGGAAGAGAAGGCGGCATCGG
CAGCAGCTGCTCAGAAAGCCGCGGACGTGAAGGCGGCACAGGAAGAGGAA
CATGTTCGCAAGGAAATGGAGGCGAAAGCAGCCGCTGTCAGGGCGATGGA
GGAAGCCAAGGCCAAAGCTGAGGCGGAAGTGCTGGCGCTGAAGAAGAAGC
AGGCGGAAGAATTACTCGAGATCGAGATGCGCAAGCAACGCGAATTGAAA
ATGAAGGAGGAGACCGAGAATATACGTATTGTTCTAGAAGCCCGTGTAGC
CGCTGTGAAGGCCAAGCGTGAGCAGGAGAAGGAGAAGGAGGAGAAGCGGA
AGCTAGTGGCACGGGCAGCGAGGGAAGCTGCAGCAAGGAAGGAAGAGGAG
CAAGAGAAGAGGATGATTGAGATTCGGCAACAACAAGAGCTGGCCAAGCG
TGCGGAGAGGATCAAGCTAGAGTTGGAGCGGGCACAGAAGGAGAAAGAAG
AGAAGGCTCTGCGGTTGCAACAGCAGTTGATGATCGAGGCCAAGGAAAAG
GAGATGCCGGCAAAGAAGAAACTGAGAGATGAAGAAGAGAAGAAGATGAA
GGCCACAGCTATTGCGGCTGATGCATCTGCCAAGGCTACCGCTGCAGCTG
CTGCCACTACTACCAAGGCTGCAGCGGCGAGCAAGGCCGCTGTCAAGAGC
AAGAAGGAAAGTGGGGCAGAATGGGAAGAAATGCGTCGGTTGGAACGAGA
GAGTCAGGAGCTGTTGTCCCTCTCTCCTTCGACTCTACGAACGGGGGGGA
AGGCCGCCTTTTCCCCAGAGGGTGAGTTCATAAAGCGTGGTAGCAAGATC
TCTGTGCCCGCTGGAGTGGAGCTTGTGGGAGCAGCAGGAGCAGCAGTAGG
GTCTTCGGTAGTGGAGAAGGTGAGCAAGGAGGAGGTGGAGAAGGAGAGGA
AAGAGTTATTGATGGGCTTGGATGCCGTCATGCAGGATCTCCAGCGACGC
GCGGAGGAGAGAAAGGGGCCAAAATTAACTGCGAAGGATGGGAAGATCAG
CGCTAGCGCTAGCAGCAGCAGTAGTAAGAAGGCTCCAGCCAAGCCACCAG
CAGCAGCAGTAGAGGCGTCAGTGTCGGACCCGACAGCAGTAGTTAAGAAA
TTAACTATTCCGAAGTTGAAGGACATTTTGCTGGTGAACGGTGTGAAATG
CTCGAGCCGGGCGAAGAAGGAGGAGTTGGTTCGACTAGTGGTGGGGCTGG
TTGAGAAGAATCCGGGAGTTTTGACGGCGGTGACTACGAAGTAAGGGAAG
GTAGGGAAGGATGCATCAGCATGAAAGCAAAAATAAGAACTTACTCAAGT
GATGAGAGAGAAGTGGAAAGTGGACTTTGACGTGGAGAGATGGAGATAAG
ACAGCTAAAGCTGGAGGGGAGAGAGCGAGTGCTGCAAGGCACATATACAT
GATACTTTTACCCCATCAAACAAACTCTCGAATCGAAAAGCGGAAAAACA
ACAAAAGGTTACTAGAAAAATATGTAGAACAGGAGAAGAACAATTGGAGG
CAAGGAAGCAAGGATACGTGTTTTGGTGCGTGTGTGTGTGTGTGTGTGTG
TGTGTG
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protein sequence of jgi.p|Nanoce1779_2|586331

>mRNA_4058-protein ID=mRNA_4058-protein|Name=jgi.p|Nanoce1779_2|586331|organism=Nannochloropsis oceanica|type=polypeptide|length=641bp
MRHPQRPSRRQVRCIALMVSASLPTLSSAFVCRPNSGALSPTLSISSAIS
LPRRTAARTSMLPVNLASLDVLLAESSLAVDIPVLSPTSALEAFAVLTVP
LFLFAGLQLTRQDDRKPKNADDPINEMSTNDILTKLFVEVEGKEPTSMFS
SSSTASPLMPVKLEARGGAGGGKGSSVLERPPAPSPVDEEVRQTKLRASE
EQERAKAAAAAAAVTKRKEEEEKAASAAAAQKAADVKAAQEEEHVRKEME
AKAAAVRAMEEAKAKAEAEVLALKKKQAEELLEIEMRKQRELKMKEETEN
IRIVLEARVAAVKAKREQEKEKEEKRKLVARAAREAAARKEEEQEKRMIE
IRQQQELAKRAERIKLELERAQKEKEEKALRLQQQLMIEAKEKEMPAKKK
LRDEEEKKMKATAIAADASAKATAAAAATTTKAAAASKAAVKSKKESGAE
WEEMRRLERESQELLSLSPSTLRTGGKAAFSPEGEFIKRGSKISVPAGVE
LVGAAGAAVGSSVVEKVSKEEVEKERKELLMGLDAVMQDLQRRAEERKGP
KLTAKDGKISASASSSSSKKAPAKPPAAAVEASVSDPTAVVKKLTIPKLK
DILLVNGVKCSSRAKKEELVRLVVGLVEKNPGVLTAVTTK*
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mRNA from alignment at scaffold_8:734578..736933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4058 ID=mRNA_4058|Name=jgi.p|Nanoce1779_2|586331|organism=Nannochloropsis oceanica|type=mRNA|length=2356bp|location=Sequence derived from alignment at scaffold_8:734578..736933- (Nannochloropsis oceanica)
ACAGCACAGTTTCTGGCACATTTTCCGTGTTGTATCCGAATCAAATCAAC
CGCGCCAGGAAGCTCTACTCAACCACGCCCTACTCGTCCAAGTAGCGGTC
TCTGTCACCCCCACCAAAAGGATGAGACACCCGCAACGACCCAGCCGCCG
CCAGGTGCGGTGCATTGCGCTAATGGTCTCAGCAAGCCTGCCTACCTTGT
CCTCCGCATTCGTGTGCCGGCCAAACAGCGGCGCCCTTTCCCCAACACTC
TCCATCTCTTCTGCCATCTCCCTTCCAAGGCGGACGGCAGCACGCACGTC
CATGCTCCCTGTGAACCTCGCTTCTCTGGATGTGTTGCTCGCCGAGTCCA
GTCTGGCGGTTGACATTCCCGTCTTGTCCCCAACCTCGGCCTTAGAAGCC
TTTGCAGTACTAACCGTGCCTCTCTTTCTATTCGCTGGCCTGCAACTCAC
CCGTCAAGACGACCGAAAGCCAAAAAACGCGGACGATCCCATCAATGAAA
TGAGCACCAATGATATCCTGACTAAACTATTCGTCGAAGTGGAGGGAAAG
GAGCCTACCTCCATGTTCTCCTCGTCTTCCACCGCCTCTCCCTTGATGCC
GGTCAAGCTCGAGGCCCGCGGTGGGGCAGGGGGAGGAAAGGGGTCGAGTG
TACTCGAGCGTCCGCCCGCGCCCTCCCCTGTCGATGAGGAGGTCCGCCAG
ACTAAGCTCCGGGCCTCCGAAGAGCAGGAACGGGCCAAGGCAGCTGCAGC
GGCAGCAGCTGTGACCAAGAGGAAGGAGGAGGAAGAGAAGGCGGCATCGG
CAGCAGCTGCTCAGAAAGCCGCGGACGTGAAGGCGGCACAGGAAGAGGAA
CATGTTCGCAAGGAAATGGAGGCGAAAGCAGCCGCTGTCAGGGCGATGGA
GGAAGCCAAGGCCAAAGCTGAGGCGGAAGTGCTGGCGCTGAAGAAGAAGC
AGGCGGAAGAATTACTCGAGATCGAGATGCGCAAGCAACGCGAATTGAAA
ATGAAGGAGGAGACCGAGAATATACGTATTGTTCTAGAAGCCCGTGTAGC
CGCTGTGAAGGCCAAGCGTGAGCAGGAGAAGGAGAAGGAGGAGAAGCGGA
AGCTAGTGGCACGGGCAGCGAGGGAAGCTGCAGCAAGGAAGGAAGAGGAG
CAAGAGAAGAGGATGATTGAGATTCGGCAACAACAAGAGCTGGCCAAGCG
TGCGGAGAGGATCAAGCTAGAGTTGGAGCGGGCACAGAAGGAGAAAGAAG
AGAAGGCTCTGCGGTTGCAACAGCAGTTGATGATCGAGGCCAAGGAAAAG
GAGATGCCGGCAAAGAAGAAACTGAGAGATGAAGAAGAGAAGAAGATGAA
GGCCACAGCTATTGCGGCTGATGCATCTGCCAAGGCTACCGCTGCAGCTG
CTGCCACTACTACCAAGGCTGCAGCGGCGAGCAAGGCCGCTGTCAAGAGC
AAGAAGGAAAGTGGGGCAGAATGGGAAGAAATGCGTCGGTTGGAACGAGA
GAGTCAGGAGCTGTTGTCCCTCTCTCCTTCGACTCTACGAACGGGGGGGA
AGGCCGCCTTTTCCCCAGAGGGTGAGTTCATAAAGCGTGGTAGCAAGATC
TCTGTGCCCGCTGGAGTGGAGCTTGTGGGAGCAGCAGGAGCAGCAGTAGG
GTCTTCGGTAGTGGAGAAGGTGAGCAAGGAGGAGGTGGAGAAGGAGAGGA
AAGAGTTATTGATGGGCTTGGATGCCGTCATGCAGGATCTCCAGCGACGC
GCGGAGGAGAGAAAGGGGCCAAAATTAACTGCGAAGGATGGGAAGATCAG
CGCTAGCGCTAGCAGCAGCAGTAGTAAGAAGGCTCCAGCCAAGCCACCAG
CAGCAGCAGTAGAGGCGTCAGTGTCGGACCCGACAGCAGTAGTTAAGAAA
TTAACTATTCCGAAGTTGAAGGACATTTTGCTGGTGAACGGTGTGAAATG
CTCGAGCCGGGCGAAGAAGGAGGAGTTGGTTCGACTAGTGGTGGGGCTGG
TTGAGAAGAATCCGGGAGTTTTGACGGCGGTGACTACGAAGTAAGGGAAG
GTAGGGAAGGATGCATCAGCATGAAAGCAAAAATAAGAACTTACTCAAGT
GATGAGAGAGAAGTGGAAAGTGGACTTTGACGTGGAGAGATGGAGATAAG
ACAGCTAAAGCTGGAGGGGAGAGAGCGAGTGCTGCAAGGCACATATACAT
GATACTTTTACCCCATCAAACAAACTCTCGAATCGAAAAGCGGAAAAACA
ACAAAAGGTTACTAGAAAAATATGTAGAACAGGAGAAGAACAATTGGAGG
CAAGGAAGCAAGGATACGTGTTTTGGTGCGTGTGTGTGTGTGTGTGTGTG
TGTGTG
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Coding sequence (CDS) from alignment at scaffold_8:734578..736933-

>mRNA_4058 ID=mRNA_4058|Name=jgi.p|Nanoce1779_2|586331|organism=Nannochloropsis oceanica|type=CDS|length=1923bp|location=Sequence derived from alignment at scaffold_8:734578..736933- (Nannochloropsis oceanica)
ATGAGACACCCGCAACGACCCAGCCGCCGCCAGGTGCGGTGCATTGCGCT
AATGGTCTCAGCAAGCCTGCCTACCTTGTCCTCCGCATTCGTGTGCCGGC
CAAACAGCGGCGCCCTTTCCCCAACACTCTCCATCTCTTCTGCCATCTCC
CTTCCAAGGCGGACGGCAGCACGCACGTCCATGCTCCCTGTGAACCTCGC
TTCTCTGGATGTGTTGCTCGCCGAGTCCAGTCTGGCGGTTGACATTCCCG
TCTTGTCCCCAACCTCGGCCTTAGAAGCCTTTGCAGTACTAACCGTGCCT
CTCTTTCTATTCGCTGGCCTGCAACTCACCCGTCAAGACGACCGAAAGCC
AAAAAACGCGGACGATCCCATCAATGAAATGAGCACCAATGATATCCTGA
CTAAACTATTCGTCGAAGTGGAGGGAAAGGAGCCTACCTCCATGTTCTCC
TCGTCTTCCACCGCCTCTCCCTTGATGCCGGTCAAGCTCGAGGCCCGCGG
TGGGGCAGGGGGAGGAAAGGGGTCGAGTGTACTCGAGCGTCCGCCCGCGC
CCTCCCCTGTCGATGAGGAGGTCCGCCAGACTAAGCTCCGGGCCTCCGAA
GAGCAGGAACGGGCCAAGGCAGCTGCAGCGGCAGCAGCTGTGACCAAGAG
GAAGGAGGAGGAAGAGAAGGCGGCATCGGCAGCAGCTGCTCAGAAAGCCG
CGGACGTGAAGGCGGCACAGGAAGAGGAACATGTTCGCAAGGAAATGGAG
GCGAAAGCAGCCGCTGTCAGGGCGATGGAGGAAGCCAAGGCCAAAGCTGA
GGCGGAAGTGCTGGCGCTGAAGAAGAAGCAGGCGGAAGAATTACTCGAGA
TCGAGATGCGCAAGCAACGCGAATTGAAAATGAAGGAGGAGACCGAGAAT
ATACGTATTGTTCTAGAAGCCCGTGTAGCCGCTGTGAAGGCCAAGCGTGA
GCAGGAGAAGGAGAAGGAGGAGAAGCGGAAGCTAGTGGCACGGGCAGCGA
GGGAAGCTGCAGCAAGGAAGGAAGAGGAGCAAGAGAAGAGGATGATTGAG
ATTCGGCAACAACAAGAGCTGGCCAAGCGTGCGGAGAGGATCAAGCTAGA
GTTGGAGCGGGCACAGAAGGAGAAAGAAGAGAAGGCTCTGCGGTTGCAAC
AGCAGTTGATGATCGAGGCCAAGGAAAAGGAGATGCCGGCAAAGAAGAAA
CTGAGAGATGAAGAAGAGAAGAAGATGAAGGCCACAGCTATTGCGGCTGA
TGCATCTGCCAAGGCTACCGCTGCAGCTGCTGCCACTACTACCAAGGCTG
CAGCGGCGAGCAAGGCCGCTGTCAAGAGCAAGAAGGAAAGTGGGGCAGAA
TGGGAAGAAATGCGTCGGTTGGAACGAGAGAGTCAGGAGCTGTTGTCCCT
CTCTCCTTCGACTCTACGAACGGGGGGGAAGGCCGCCTTTTCCCCAGAGG
GTGAGTTCATAAAGCGTGGTAGCAAGATCTCTGTGCCCGCTGGAGTGGAG
CTTGTGGGAGCAGCAGGAGCAGCAGTAGGGTCTTCGGTAGTGGAGAAGGT
GAGCAAGGAGGAGGTGGAGAAGGAGAGGAAAGAGTTATTGATGGGCTTGG
ATGCCGTCATGCAGGATCTCCAGCGACGCGCGGAGGAGAGAAAGGGGCCA
AAATTAACTGCGAAGGATGGGAAGATCAGCGCTAGCGCTAGCAGCAGCAG
TAGTAAGAAGGCTCCAGCCAAGCCACCAGCAGCAGCAGTAGAGGCGTCAG
TGTCGGACCCGACAGCAGTAGTTAAGAAATTAACTATTCCGAAGTTGAAG
GACATTTTGCTGGTGAACGGTGTGAAATGCTCGAGCCGGGCGAAGAAGGA
GGAGTTGGTTCGACTAGTGGTGGGGCTGGTTGAGAAGAATCCGGGAGTTT
TGACGGCGGTGACTACGAAGTAA
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Synonyms
Publications