jgi.p|Nanoce1779_2|586328, mRNA_4056 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586328
Unique Name	mRNA_4056
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	954
Alignment location	scaffold_8:732481..733434 +

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Properties


Property Name	Value
TranscriptId	586414
Track	FilteredModels2
ProteinId	586328

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:732481..733434 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586328	gene_4056	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586328	mRNA_4056-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4056	CDS_4056	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:732481..733434+
coding sequence from alignment at scaffold_8:732481..733434+

mRNA sequence

>mRNA_4056 ID=mRNA_4056|Name=jgi.p|Nanoce1779_2|586328|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
AAGCTCACAAAGCCACCCACAGCACACCACGCACAGCCAAAGCGCCAAAG
ACGTTTCCTGCATAAATGTGCAGGGCAATCAGCCCTTGTAAATTATCCCC
AGGTCTCCAGCTCCTCGTCTTGCTACTCAATCTCCTGGCTCTCCTCTAGC
CGCCAGCATCATCACTGCGTCTGGCCAGGTCCCCTCAATGGGCATGGAGG
TGTAGGGCCAAAGAGACGATCACAGCGCGACCCAGTTCCTTGGCATTCCT
TACGCGCACTCGCCTGTCCGGCGGTGGGAAGAAGCCCAACCCTCCTGGCA
AGTGCATGACTCCCCCGTTTCGCCCCGTCTCCCCTGCTCGCCTCGTTCGA
TGCCTGTCAGGCCCCGCTTGTGTGCCCTCAAATCCTCAACGGCCTCGTCG
TCGGGAAGGGGGATTGTTTGTTTGTAAATGTATATCGCCCCCCTTTCACA
ACGACTAAAAATCCTAAACCTGTGATGGTCTTCCTTCACGGCGGCTCATC
TATACTAGGAGGTATTTCTTCACCCCTCTTGGACGGCAATGCTACTCTCT
CCTACCGTCTTGGGGCCCTCGAGGCCGAGCTTTCTCGCGAATTCTTCTCT
GCCAGTCAAGGCAATTTAGCGATGCTCGATCAGCAACTGGCCTTAAAATG
GGTTCACTCTAATATACATTTCTTTGGTGGCGATCCGTCCTCAGTGACAT
TAGGAGGGGAATCCACCGGGGCTTGTGGTGCGTGTCTGCATATGATCGTA
CCAGAGAGCAGGAAGTTGCTTAAGACGGTGGTGATTGAGAGCGGGGGATG
TGTGGGGGTTGCCTTTGGAGGTAGGAATGGCACGGAGTCGAGCGTTTGTT
GTGGAGACGGGGTGTAAGGACAGCAGCAGCAACGGCAGCAGCAGCAGCGA
TTGCAGTAGCGGCAGTATGATTGATTGCTTGAGTCAAGTCTCAGTGGGCG
TATT

protein sequence of jgi.p|Nanoce1779_2|586328

>mRNA_4056-protein ID=mRNA_4056-protein|Name=jgi.p|Nanoce1779_2|586328|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MVFLHGGSSILGGISSPLLDGNATLSYRLGALEAELSREFFSASQGNLAM
LDQQLALKWVHSNIHFFGGDPSSVTLGGESTGACGACLHMIVPESRKLLK
TVVIESGGCVGVAFGGRNGTESSVCCGDGV*

mRNA from alignment at scaffold_8:732481..733434+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4056 ID=mRNA_4056|Name=jgi.p|Nanoce1779_2|586328|organism=Nannochloropsis oceanica|type=mRNA|length=954bp|location=Sequence derived from alignment at scaffold_8:732481..733434+ (Nannochloropsis oceanica)
AAGCTCACAAAGCCACCCACAGCACACCACGCACAGCCAAAGCGCCAAAG
ACGTTTCCTGCATAAATGTGCAGGGCAATCAGCCCTTGTAAATTATCCCC
AGGTCTCCAGCTCCTCGTCTTGCTACTCAATCTCCTGGCTCTCCTCTAGC
CGCCAGCATCATCACTGCGTCTGGCCAGGTCCCCTCAATGGGCATGGAGG
TGTAGGGCCAAAGAGACGATCACAGCGCGACCCAGTTCCTTGGCATTCCT
TACGCGCACTCGCCTGTCCGGCGGTGGGAAGAAGCCCAACCCTCCTGGCA
AGTGCATGACTCCCCCGTTTCGCCCCGTCTCCCCTGCTCGCCTCGTTCGA
TGCCTGTCAGGCCCCGCTTGTGTGCCCTCAAATCCTCAACGGCCTCGTCG
TCGGGAAGGGGGATTGTTTGTTTGTAAATGTATATCGCCCCCCTTTCACA
ACGACTAAAAATCCTAAACCTGTGATGGTCTTCCTTCACGGCGGCTCATC
TATACTAGGAGGTATTTCTTCACCCCTCTTGGACGGCAATGCTACTCTCT
CCTACCGTCTTGGGGCCCTCGAGGCCGAGCTTTCTCGCGAATTCTTCTCT
GCCAGTCAAGGCAATTTAGCGATGCTCGATCAGCAACTGGCCTTAAAATG
GGTTCACTCTAATATACATTTCTTTGGTGGCGATCCGTCCTCAGTGACAT
TAGGAGGGGAATCCACCGGGGCTTGTGGTGCGTGTCTGCATATGATCGTA
CCAGAGAGCAGGAAGTTGCTTAAGACGGTGGTGATTGAGAGCGGGGGATG
TGTGGGGGTTGCCTTTGGAGGTAGGAATGGCACGGAGTCGAGCGTTTGTT
GTGGAGACGGGGTGTAAGGACAGCAGCAGCAACGGCAGCAGCAGCAGCGA
TTGCAGTAGCGGCAGTATGATTGATTGCTTGAGTCAAGTCTCAGTGGGCG
TATT

Coding sequence (CDS) from alignment at scaffold_8:732481..733434+

>mRNA_4056 ID=mRNA_4056|Name=jgi.p|Nanoce1779_2|586328|organism=Nannochloropsis oceanica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_8:732481..733434+ (Nannochloropsis oceanica)
ATGGTCTTCCTTCACGGCGGCTCATCTATACTAGGAGGTATTTCTTCACC
CCTCTTGGACGGCAATGCTACTCTCTCCTACCGTCTTGGGGCCCTCGAGG
CCGAGCTTTCTCGCGAATTCTTCTCTGCCAGTCAAGGCAATTTAGCGATG
CTCGATCAGCAACTGGCCTTAAAATGGGTTCACTCTAATATACATTTCTT
TGGTGGCGATCCGTCCTCAGTGACATTAGGAGGGGAATCCACCGGGGCTT
GTGGTGCGTGTCTGCATATGATCGTACCAGAGAGCAGGAAGTTGCTTAAG
ACGGTGGTGATTGAGAGCGGGGGATGTGTGGGGGTTGCCTTTGGAGGTAG
GAATGGCACGGAGTCGAGCGTTTGTTGTGGAGACGGGGTGTAA

Synonyms

Publications