jgi.p|Nanoce1779_2|586325, mRNA_4055 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586325
Unique NamemRNA_4055
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2123
Alignment locationscaffold_8:730176..732298 -

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Properties
Property NameValue
TranscriptId586411
TrackFilteredModels2
ProteinId586325
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:730176..732298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586325gene_4055Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586325mRNA_4055-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4055CDS_4055Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4055 ID=mRNA_4055|Name=jgi.p|Nanoce1779_2|586325|organism=Nannochloropsis oceanica|type=mRNA|length=2123bp
ACAGGGCAAGCGATGACAAGGCATTGGCTGCCCCACCTACCCAGACTTCT
ATTTCTGGTCACCTGGGTCTCTTGCGCGTGTGCGTTTACGCCGTGGCAGC
CACTAGCCCCGCCAGCACCAGCATTATGGTCATCATTCCCCCACGCCACC
TGTGGCGTGTCCACTCCTTCGCCCGCCTTCGCGTGTGTAATCGATCCATC
AGTACCACCACGACAAGTCTCCACGTCAAAGTTCCTCGTACTTTTCAAAG
GCGGTGCGGCTGGCAATGGTGACCAGGGCACCAGCCTGGCCTGCCTACGG
ATAGCCGAGTTCCGAGGACTTGCATATCGAGAGCTGGGGGATTTAGCAGC
TGTTGCCGCACTCCGCTTTGAAGACGCTTTGGAGACCGATGTATCCCTGG
CAGGTGGGCGAAAGCCAGACGAGGACAATGAGGAGGACGAGAAGAGCAGC
CCGGCTTCATCCCTTATGTATGTCCACGGACTGCCCTCCGTCCTCATTTT
GCGGAGAATTGTGGAACGTGCTATACTTGTGCACGCCGCGTATGAGGTCT
GGGCTACAGGGTCTTCCTTGTGCGAGTGTGCCGCCATCACCAAGAACATT
CTGAACGACGACCCACGAATGGGGCCGCTACGAGAAAATTCGACGTGGGC
GGCCAGCAGTTACGTCTTTGGAACTAAGCACGGTCGACGGAAGGAAGTCG
ACACACTACCCCAAAAGCTGTCAATTTTTAAGATACTGCTTCGACGGTTG
CCAGGTGCTGTGGACTTGAAAGCCCCTGCTGTCCGGTTTGTGCTTTTGGA
GGACGGAGATGCCGCGGATGGGGATAAATTGCACCAAGTGTGGTTCACGC
GAGAGGTGGCCAAAGGGTCTCGAGGCTTGACCGAACGCTTGTCCTTGCGG
CGACGGCCGTATGTTACTACTACCTCCATGGAGCCGAAAGCCAGCTTGGT
CATGTGCAATGTGGCTAGCTTGCAGTCGGGTGGGAAGGTTCTAGATCCTA
TGGCGGGAGGCGGGGGTTTGTTGCTTGCTGCCGCTCAGCTCGGCGCTGGT
TTGACGGTGGGTGTAGACGTGAATTCGAGCATTGATGTCAGCCGCATCGA
TAGCAATTTTCACGACCTGGGTTTAAATCCTCCCGCGAATTTTATCTCTG
GCGACGTGGGAGACCCGAATGTGCAAGAGCGGCTTCACCGATGGGGGCCA
TTCGACGTGATGGTGGCCGATCCTCCCTACGGAAAGAGGGAGAGAGGGTC
TGTCCGTGCGGAAGGCGCGATCCAAGAAGCAGTCTATACACTGTACAACT
TGGCCGCGAATAACAAACTGCTCCGGGTTGGTGGCCGATTGGATTATTTT
TTGCCGATGGACCCTTGTTGGGCGTCGCGTGATGTGGTGCCGTTGCTTCC
ATCGCATCCGTGCTTAACACTCATGGACGTCTCACGGCAGCCATTAAACA
CCCGGCTGGATCGATATTTGATTACCTTACACAAGCACCGAGCCGCGCGC
GAAGGAGAAAAAGTGATCATGCCGGATGTTAAGGCGGGGACACAGTCAGA
AGAAGACGAGGGTTCCTCCTCTCGTGTGTGGCATTACAACTAGACGGAAG
GGGCGAGGTACCGTGTTGATGAAACAAAAGCGCCTGTAAGCATATTAGTG
AGCGACTTTTGAGATGCATTGACTTGTACAAAAATCATGTAGTATTTTCA
CACTTATTTGATATGGAAGAGCGCTGAATGCCAAAAGAGAAAGCACATAG
CACACTAAAAGTAGAAATAAAAGTGGGTCACCTGGACGGTTTTCGACCAT
CTAGGCAAGTGGTTAGTTGATAAAAATTGGAAAATAATGAAATGAACACG
GATTGGTCAAGCTGCTCGGGCCATGGGATGTTTCTGGTTTGCAGAAATGG
TGACCAAAGTGGGCTTAAAATCCCCAGAGGGCAGGGAAACTGCCTGCGAA
GAAACATCTTTCAAAGCCCACAAGGGCGAGAGGGGAGATATTAATGCACA
TGATGGCCCAACTTTCCTGCCCTTCCATGTTTGGTATAGTATGTTCTAGG
GGCTATATGCACACTCTCTTACAGCTCAGCGTACTTTAGTGGATTTGTGA
AAGTGAAAATCATTGCGATCCCC
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protein sequence of jgi.p|Nanoce1779_2|586325

>mRNA_4055-protein ID=mRNA_4055-protein|Name=jgi.p|Nanoce1779_2|586325|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MTRHWLPHLPRLLFLVTWVSCACAFTPWQPLAPPAPALWSSFPHATCGVS
TPSPAFACVIDPSVPPRQVSTSKFLVLFKGGAAGNGDQGTSLACLRIAEF
RGLAYRELGDLAAVAALRFEDALETDVSLAGGRKPDEDNEEDEKSSPASS
LMYVHGLPSVLILRRIVERAILVHAAYEVWATGSSLCECAAITKNILNDD
PRMGPLRENSTWAASSYVFGTKHGRRKEVDTLPQKLSIFKILLRRLPGAV
DLKAPAVRFVLLEDGDAADGDKLHQVWFTREVAKGSRGLTERLSLRRRPY
VTTTSMEPKASLVMCNVASLQSGGKVLDPMAGGGGLLLAAAQLGAGLTVG
VDVNSSIDVSRIDSNFHDLGLNPPANFISGDVGDPNVQERLHRWGPFDVM
VADPPYGKRERGSVRAEGAIQEAVYTLYNLAANNKLLRVGGRLDYFLPMD
PCWASRDVVPLLPSHPCLTLMDVSRQPLNTRLDRYLITLHKHRAAREGEK
VIMPDVKAGTQSEEDEGSSSRVWHYN*
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mRNA from alignment at scaffold_8:730176..732298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4055 ID=mRNA_4055|Name=jgi.p|Nanoce1779_2|586325|organism=Nannochloropsis oceanica|type=mRNA|length=2123bp|location=Sequence derived from alignment at scaffold_8:730176..732298- (Nannochloropsis oceanica)
ACAGGGCAAGCGATGACAAGGCATTGGCTGCCCCACCTACCCAGACTTCT
ATTTCTGGTCACCTGGGTCTCTTGCGCGTGTGCGTTTACGCCGTGGCAGC
CACTAGCCCCGCCAGCACCAGCATTATGGTCATCATTCCCCCACGCCACC
TGTGGCGTGTCCACTCCTTCGCCCGCCTTCGCGTGTGTAATCGATCCATC
AGTACCACCACGACAAGTCTCCACGTCAAAGTTCCTCGTACTTTTCAAAG
GCGGTGCGGCTGGCAATGGTGACCAGGGCACCAGCCTGGCCTGCCTACGG
ATAGCCGAGTTCCGAGGACTTGCATATCGAGAGCTGGGGGATTTAGCAGC
TGTTGCCGCACTCCGCTTTGAAGACGCTTTGGAGACCGATGTATCCCTGG
CAGGTGGGCGAAAGCCAGACGAGGACAATGAGGAGGACGAGAAGAGCAGC
CCGGCTTCATCCCTTATGTATGTCCACGGACTGCCCTCCGTCCTCATTTT
GCGGAGAATTGTGGAACGTGCTATACTTGTGCACGCCGCGTATGAGGTCT
GGGCTACAGGGTCTTCCTTGTGCGAGTGTGCCGCCATCACCAAGAACATT
CTGAACGACGACCCACGAATGGGGCCGCTACGAGAAAATTCGACGTGGGC
GGCCAGCAGTTACGTCTTTGGAACTAAGCACGGTCGACGGAAGGAAGTCG
ACACACTACCCCAAAAGCTGTCAATTTTTAAGATACTGCTTCGACGGTTG
CCAGGTGCTGTGGACTTGAAAGCCCCTGCTGTCCGGTTTGTGCTTTTGGA
GGACGGAGATGCCGCGGATGGGGATAAATTGCACCAAGTGTGGTTCACGC
GAGAGGTGGCCAAAGGGTCTCGAGGCTTGACCGAACGCTTGTCCTTGCGG
CGACGGCCGTATGTTACTACTACCTCCATGGAGCCGAAAGCCAGCTTGGT
CATGTGCAATGTGGCTAGCTTGCAGTCGGGTGGGAAGGTTCTAGATCCTA
TGGCGGGAGGCGGGGGTTTGTTGCTTGCTGCCGCTCAGCTCGGCGCTGGT
TTGACGGTGGGTGTAGACGTGAATTCGAGCATTGATGTCAGCCGCATCGA
TAGCAATTTTCACGACCTGGGTTTAAATCCTCCCGCGAATTTTATCTCTG
GCGACGTGGGAGACCCGAATGTGCAAGAGCGGCTTCACCGATGGGGGCCA
TTCGACGTGATGGTGGCCGATCCTCCCTACGGAAAGAGGGAGAGAGGGTC
TGTCCGTGCGGAAGGCGCGATCCAAGAAGCAGTCTATACACTGTACAACT
TGGCCGCGAATAACAAACTGCTCCGGGTTGGTGGCCGATTGGATTATTTT
TTGCCGATGGACCCTTGTTGGGCGTCGCGTGATGTGGTGCCGTTGCTTCC
ATCGCATCCGTGCTTAACACTCATGGACGTCTCACGGCAGCCATTAAACA
CCCGGCTGGATCGATATTTGATTACCTTACACAAGCACCGAGCCGCGCGC
GAAGGAGAAAAAGTGATCATGCCGGATGTTAAGGCGGGGACACAGTCAGA
AGAAGACGAGGGTTCCTCCTCTCGTGTGTGGCATTACAACTAGACGGAAG
GGGCGAGGTACCGTGTTGATGAAACAAAAGCGCCTGTAAGCATATTAGTG
AGCGACTTTTGAGATGCATTGACTTGTACAAAAATCATGTAGTATTTTCA
CACTTATTTGATATGGAAGAGCGCTGAATGCCAAAAGAGAAAGCACATAG
CACACTAAAAGTAGAAATAAAAGTGGGTCACCTGGACGGTTTTCGACCAT
CTAGGCAAGTGGTTAGTTGATAAAAATTGGAAAATAATGAAATGAACACG
GATTGGTCAAGCTGCTCGGGCCATGGGATGTTTCTGGTTTGCAGAAATGG
TGACCAAAGTGGGCTTAAAATCCCCAGAGGGCAGGGAAACTGCCTGCGAA
GAAACATCTTTCAAAGCCCACAAGGGCGAGAGGGGAGATATTAATGCACA
TGATGGCCCAACTTTCCTGCCCTTCCATGTTTGGTATAGTATGTTCTAGG
GGCTATATGCACACTCTCTTACAGCTCAGCGTACTTTAGTGGATTTGTGA
AAGTGAAAATCATTGCGATCCCC
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Coding sequence (CDS) from alignment at scaffold_8:730176..732298-

>mRNA_4055 ID=mRNA_4055|Name=jgi.p|Nanoce1779_2|586325|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at scaffold_8:730176..732298- (Nannochloropsis oceanica)
ATGACAAGGCATTGGCTGCCCCACCTACCCAGACTTCTATTTCTGGTCAC
CTGGGTCTCTTGCGCGTGTGCGTTTACGCCGTGGCAGCCACTAGCCCCGC
CAGCACCAGCATTATGGTCATCATTCCCCCACGCCACCTGTGGCGTGTCC
ACTCCTTCGCCCGCCTTCGCGTGTGTAATCGATCCATCAGTACCACCACG
ACAAGTCTCCACGTCAAAGTTCCTCGTACTTTTCAAAGGCGGTGCGGCTG
GCAATGGTGACCAGGGCACCAGCCTGGCCTGCCTACGGATAGCCGAGTTC
CGAGGACTTGCATATCGAGAGCTGGGGGATTTAGCAGCTGTTGCCGCACT
CCGCTTTGAAGACGCTTTGGAGACCGATGTATCCCTGGCAGGTGGGCGAA
AGCCAGACGAGGACAATGAGGAGGACGAGAAGAGCAGCCCGGCTTCATCC
CTTATGTATGTCCACGGACTGCCCTCCGTCCTCATTTTGCGGAGAATTGT
GGAACGTGCTATACTTGTGCACGCCGCGTATGAGGTCTGGGCTACAGGGT
CTTCCTTGTGCGAGTGTGCCGCCATCACCAAGAACATTCTGAACGACGAC
CCACGAATGGGGCCGCTACGAGAAAATTCGACGTGGGCGGCCAGCAGTTA
CGTCTTTGGAACTAAGCACGGTCGACGGAAGGAAGTCGACACACTACCCC
AAAAGCTGTCAATTTTTAAGATACTGCTTCGACGGTTGCCAGGTGCTGTG
GACTTGAAAGCCCCTGCTGTCCGGTTTGTGCTTTTGGAGGACGGAGATGC
CGCGGATGGGGATAAATTGCACCAAGTGTGGTTCACGCGAGAGGTGGCCA
AAGGGTCTCGAGGCTTGACCGAACGCTTGTCCTTGCGGCGACGGCCGTAT
GTTACTACTACCTCCATGGAGCCGAAAGCCAGCTTGGTCATGTGCAATGT
GGCTAGCTTGCAGTCGGGTGGGAAGGTTCTAGATCCTATGGCGGGAGGCG
GGGGTTTGTTGCTTGCTGCCGCTCAGCTCGGCGCTGGTTTGACGGTGGGT
GTAGACGTGAATTCGAGCATTGATGTCAGCCGCATCGATAGCAATTTTCA
CGACCTGGGTTTAAATCCTCCCGCGAATTTTATCTCTGGCGACGTGGGAG
ACCCGAATGTGCAAGAGCGGCTTCACCGATGGGGGCCATTCGACGTGATG
GTGGCCGATCCTCCCTACGGAAAGAGGGAGAGAGGGTCTGTCCGTGCGGA
AGGCGCGATCCAAGAAGCAGTCTATACACTGTACAACTTGGCCGCGAATA
ACAAACTGCTCCGGGTTGGTGGCCGATTGGATTATTTTTTGCCGATGGAC
CCTTGTTGGGCGTCGCGTGATGTGGTGCCGTTGCTTCCATCGCATCCGTG
CTTAACACTCATGGACGTCTCACGGCAGCCATTAAACACCCGGCTGGATC
GATATTTGATTACCTTACACAAGCACCGAGCCGCGCGCGAAGGAGAAAAA
GTGATCATGCCGGATGTTAAGGCGGGGACACAGTCAGAAGAAGACGAGGG
TTCCTCCTCTCGTGTGTGGCATTACAACTAG
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Synonyms
Publications