jgi.p|Nanoce1779_2|565264, mRNA_4054 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565264
Unique NamemRNA_4054
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length360
Alignment locationscaffold_8:729815..730174 -

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Properties
Property NameValue
TranscriptId565350
TrackFilteredModels2
ProteinId565264
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:729815..730174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565264gene_4054Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4054CDS_4054Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565264mRNA_4054-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4054 ID=mRNA_4054|Name=jgi.p|Nanoce1779_2|565264|organism=Nannochloropsis oceanica|type=mRNA|length=360bp
ATGATCGCCTACACCGCTTACTTTGCTTTCATCCCGCTCCTGCTCCTCGG
TCATGCGTCGCATCTCTTGCTGGAACCGGCGTTGCTCCTCCTTGATCTCG
CGCTCCAACCGCCGCTTCTCCAGGCGCAATCACCGGGCCTCCTGGTGCTC
TTGTCACAAGCGGGTCATCGTCGAACCATAGCGCTTCTGGAACACGCGGC
CCATGGCGCCGACGGCCACCGTGGCCGCCGTGACGAGGGAGGGAACCAAG
GCATTGTGGCTCTGTGTGTGCAAGGCCCCCCACGCCGCATGGCTCGCCTG
GCCGCTTCCACGGCCGCAGGGACAAGTCTGAACAGTCGATGGTACTGCTC
GTGGTGCTAG
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protein sequence of jgi.p|Nanoce1779_2|565264

>mRNA_4054-protein ID=mRNA_4054-protein|Name=jgi.p|Nanoce1779_2|565264|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MIAYTAYFAFIPLLLLGHASHLLLEPALLLLDLALQPPLLQAQSPGLLVL
LSQAGHRRTIALLEHAAHGADGHRGRRDEGGNQGIVALCVQGPPRRMARL
AASTAAGTSLNSRWYCSWC*
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mRNA from alignment at scaffold_8:729815..730174-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4054 ID=mRNA_4054|Name=jgi.p|Nanoce1779_2|565264|organism=Nannochloropsis oceanica|type=mRNA|length=360bp|location=Sequence derived from alignment at scaffold_8:729815..730174- (Nannochloropsis oceanica)
ATGATCGCCTACACCGCTTACTTTGCTTTCATCCCGCTCCTGCTCCTCGG
TCATGCGTCGCATCTCTTGCTGGAACCGGCGTTGCTCCTCCTTGATCTCG
CGCTCCAACCGCCGCTTCTCCAGGCGCAATCACCGGGCCTCCTGGTGCTC
TTGTCACAAGCGGGTCATCGTCGAACCATAGCGCTTCTGGAACACGCGGC
CCATGGCGCCGACGGCCACCGTGGCCGCCGTGACGAGGGAGGGAACCAAG
GCATTGTGGCTCTGTGTGTGCAAGGCCCCCCACGCCGCATGGCTCGCCTG
GCCGCTTCCACGGCCGCAGGGACAAGTCTGAACAGTCGATGGTACTGCTC
GTGGTGCTAG
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Coding sequence (CDS) from alignment at scaffold_8:729815..730174-

>mRNA_4054 ID=mRNA_4054|Name=jgi.p|Nanoce1779_2|565264|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_8:729815..730174- (Nannochloropsis oceanica)
ATGATCGCCTACACCGCTTACTTTGCTTTCATCCCGCTCCTGCTCCTCGG
TCATGCGTCGCATCTCTTGCTGGAACCGGCGTTGCTCCTCCTTGATCTCG
CGCTCCAACCGCCGCTTCTCCAGGCGCAATCACCGGGCCTCCTGGTGCTC
TTGTCACAAGCGGGTCATCGTCGAACCATAGCGCTTCTGGAACACGCGGC
CCATGGCGCCGACGGCCACCGTGGCCGCCGTGACGAGGGAGGGAACCAAG
GCATTGTGGCTCTGTGTGTGCAAGGCCCCCCACGCCGCATGGCTCGCCTG
GCCGCTTCCACGGCCGCAGGGACAAGTCTGAACAGTCGATGGTACTGCTC
GTGGTGCTAG
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Synonyms
Publications