jgi.p|Nanoce1779_2|586324, mRNA_4053 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586324
Unique NamemRNA_4053
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2294
Alignment locationscaffold_8:726796..729089 -

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Properties
Property NameValue
TranscriptId586410
TrackFilteredModels2
ProteinId586324
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:726796..729089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586324gene_4053Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586324mRNA_4053-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4053CDS_4053Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4053 ID=mRNA_4053|Name=jgi.p|Nanoce1779_2|586324|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp
ACAGGGCTCGTTGTCGCCCCTCGTCATCGTCGGCCATATGTGGCGCCCGC
GAGCGGTGGCGGGTGCGGCGTTGGCCCGTCATAGCAGAAGCAAGTGTATC
CTGACACCAACAGCCTCCATAACGAAGCTGGCATGCCACCACGCCACGGC
ACCACGATGGCGGCGACGCTTGGGCAGGCCCACTACCTCTCCTCCTCCGA
TGCCCTTCTCAACGACGACCAACACCGCCAGGACCAGCAGTACCAGCATC
CCCTTGAACCCTGGCCTCTTTGGTGTGGTGGGTCTTCGTCGCCCCGAAGA
CTTTTTGCGACTGGCACGCGAGTCAATAAGACGGTGCGAGGAAATCAAAT
ACAACCTGATGACATGGAAAGTGCCACCAGGGGTGGAGACGATTCGAGAC
ATGGACGCCATGTCAAACACGCTGTGCATCGCCATCGATGCGGCGGAACT
CGCGCGCAACGTTCACCATGAGGCTGCTTGGCGAGAGGCAGCCGAGGAAG
CGTTTATAGGTTTGTCGGAATACATCCACGAACTCAATACGGACGTGGGA
CTGTATCAGGCCGTGCGTGCGGTCGTCGAAAACCCTCTCGTGGTCGCGAC
GCTAAGCGAAGAAGAAAAACGAACGGCCCAACTTCTCAAGGCCGAGTTCG
AGAGTAGTGGAATCCATCTGCCCGCAGCCGAGCGGCAAGAAGTTCGAGCC
CTCCTCAACGAAATCATTAGCTTGGAGACCATGTTTAGCAACAATGTCAT
TTTGGGGCGTCGCTCTTTTCAAGTGAGCAAAGCCGAGCTCATAGCACAAA
TGCCCTCTGATGTAATCCAAAACGTCATCCTCCCCCTCCAGCCCCCTCAT
CAGCCCTCCCACCTCCTCACCCTCACCACCGACACCGCTGTATCCAACGC
GGTGTTACGCTATGCCCGCGATGAGAATCTCCGCCGACGTATGTACCAAG
AAGTCAATACCAGCCCGCACGAAAATTTAGATGTTCTCTCCCGTCTTGTA
AAGGGCCGGGATGCTCTGGCAAGGAAGTTGGGGTTCCCCAGCTATGCCCA
TCGTTTTCTCGCCGATAAGATGGCCGGACATCCGGAAGAAGTCGAGCGAT
TTCTCCTCGCTCTTGCGGACAAAGTGAAGATCAAAGCCGATCTAGAGCTA
CAAGTGCTGCAACGCGCGAAGCAACTAGACGAGGACGGGCCGACGCGCAG
CGCTGCCTTCCACCATTGGGACCTCTCTTACTACATGGGCGCCGTTAAAT
CTGCTCGTCACGCCTCTGGAGTAGATGATAAAGGCATCTCTGCGTACCTT
TCTTTGGAAAATTGCTTACGTGGCCTCGCCCTGCTTTGTCACCGTCTCTT
CGGCATCGAGCTTCTAGAAGTCCCGATGGACAAAAACGAAGCCTGGGCCC
CTCCTCAAGCCCGTCTGCAGAAAATGATCCTCCTTCACTCTACTCATGGC
CAGCTTGGCACCATTTACCTAGATCTCTACCCACGTGAAGCCAAATACAC
GCATCATGCTCAATTTACTGTTCAATGTGGGTGCCTCCCCAAGGGCTCTT
CCTCGTACCAACTCCCTGTGGTGGCCTTGGTGTGCAATTTTGCGCCTTCC
GGTTCATATCAAGAAGGACCCGTCCTCCTTACGCATGGAGAGCTTGAGGC
ATTATTTCATGAATTTGGTCACGCCTTGCATTCTCTGCTGTCTCGGACTC
GGTTTCAGCACGTCTCGGGAACGAGGGCCCCTGTCGATTTTGTTGAGACC
CCTAGCCATTTACTCGAGTACTTCGCCTGGGACCAGAGGGTGCTATCCCA
ATTTGCTCATCACCATAAAACAGGTCTGCCGATACCACCGGAATTGACAA
AGGCCTTGCGGGCGGCCAAGAGGGAGTTTGCGGGCTTGGATACCCAGATT
CAGGTGCTTTACTCGTTGGTGGATCAGAAATTGTTCGGGCCGCAGCCACT
GGGGGAAGACCCGACGAGTTCTACTTTTTTGAAGGGGGTTCAGGGGCAGA
TAATGACATTGCTACACTCGGAGGGTACGGTGTGGCATGCAAGGTTTGGG
CATCTGACTGGGTATGGCGCGGGGTACTACGGTTACTTGTATGATCGGGT
GTTTGCCTCGCACATTTGGGAGAGGCTGTTTAAAAATGATCCATGGAGCA
AGGAGGCGGGGGAGAAGGTGTGGCAATCTATGCTCAGACATGGGGGGGGC
AAGGACCCGCACGAGATGCTGAGGGAGGTGTTAGGGGAGGAGCCAGCGTT
GGATAGTTTTTTGGCGGAGTTGGTTGGAGAGGAGAAGTAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|586324

>mRNA_4053-protein ID=mRNA_4053-protein|Name=jgi.p|Nanoce1779_2|586324|organism=Nannochloropsis oceanica|type=polypeptide|length=751bp
MWRPRAVAGAALARHSRSKCILTPTASITKLACHHATAPRWRRRLGRPTT
SPPPMPFSTTTNTARTSSTSIPLNPGLFGVVGLRRPEDFLRLARESIRRC
EEIKYNLMTWKVPPGVETIRDMDAMSNTLCIAIDAAELARNVHHEAAWRE
AAEEAFIGLSEYIHELNTDVGLYQAVRAVVENPLVVATLSEEEKRTAQLL
KAEFESSGIHLPAAERQEVRALLNEIISLETMFSNNVILGRRSFQVSKAE
LIAQMPSDVIQNVILPLQPPHQPSHLLTLTTDTAVSNAVLRYARDENLRR
RMYQEVNTSPHENLDVLSRLVKGRDALARKLGFPSYAHRFLADKMAGHPE
EVERFLLALADKVKIKADLELQVLQRAKQLDEDGPTRSAAFHHWDLSYYM
GAVKSARHASGVDDKGISAYLSLENCLRGLALLCHRLFGIELLEVPMDKN
EAWAPPQARLQKMILLHSTHGQLGTIYLDLYPREAKYTHHAQFTVQCGCL
PKGSSSYQLPVVALVCNFAPSGSYQEGPVLLTHGELEALFHEFGHALHSL
LSRTRFQHVSGTRAPVDFVETPSHLLEYFAWDQRVLSQFAHHHKTGLPIP
PELTKALRAAKREFAGLDTQIQVLYSLVDQKLFGPQPLGEDPTSSTFLKG
VQGQIMTLLHSEGTVWHARFGHLTGYGAGYYGYLYDRVFASHIWERLFKN
DPWSKEAGEKVWQSMLRHGGGKDPHEMLREVLGEEPALDSFLAELVGEEK
*
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mRNA from alignment at scaffold_8:726796..729089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4053 ID=mRNA_4053|Name=jgi.p|Nanoce1779_2|586324|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp|location=Sequence derived from alignment at scaffold_8:726796..729089- (Nannochloropsis oceanica)
ACAGGGCTCGTTGTCGCCCCTCGTCATCGTCGGCCATATGTGGCGCCCGC
GAGCGGTGGCGGGTGCGGCGTTGGCCCGTCATAGCAGAAGCAAGTGTATC
CTGACACCAACAGCCTCCATAACGAAGCTGGCATGCCACCACGCCACGGC
ACCACGATGGCGGCGACGCTTGGGCAGGCCCACTACCTCTCCTCCTCCGA
TGCCCTTCTCAACGACGACCAACACCGCCAGGACCAGCAGTACCAGCATC
CCCTTGAACCCTGGCCTCTTTGGTGTGGTGGGTCTTCGTCGCCCCGAAGA
CTTTTTGCGACTGGCACGCGAGTCAATAAGACGGTGCGAGGAAATCAAAT
ACAACCTGATGACATGGAAAGTGCCACCAGGGGTGGAGACGATTCGAGAC
ATGGACGCCATGTCAAACACGCTGTGCATCGCCATCGATGCGGCGGAACT
CGCGCGCAACGTTCACCATGAGGCTGCTTGGCGAGAGGCAGCCGAGGAAG
CGTTTATAGGTTTGTCGGAATACATCCACGAACTCAATACGGACGTGGGA
CTGTATCAGGCCGTGCGTGCGGTCGTCGAAAACCCTCTCGTGGTCGCGAC
GCTAAGCGAAGAAGAAAAACGAACGGCCCAACTTCTCAAGGCCGAGTTCG
AGAGTAGTGGAATCCATCTGCCCGCAGCCGAGCGGCAAGAAGTTCGAGCC
CTCCTCAACGAAATCATTAGCTTGGAGACCATGTTTAGCAACAATGTCAT
TTTGGGGCGTCGCTCTTTTCAAGTGAGCAAAGCCGAGCTCATAGCACAAA
TGCCCTCTGATGTAATCCAAAACGTCATCCTCCCCCTCCAGCCCCCTCAT
CAGCCCTCCCACCTCCTCACCCTCACCACCGACACCGCTGTATCCAACGC
GGTGTTACGCTATGCCCGCGATGAGAATCTCCGCCGACGTATGTACCAAG
AAGTCAATACCAGCCCGCACGAAAATTTAGATGTTCTCTCCCGTCTTGTA
AAGGGCCGGGATGCTCTGGCAAGGAAGTTGGGGTTCCCCAGCTATGCCCA
TCGTTTTCTCGCCGATAAGATGGCCGGACATCCGGAAGAAGTCGAGCGAT
TTCTCCTCGCTCTTGCGGACAAAGTGAAGATCAAAGCCGATCTAGAGCTA
CAAGTGCTGCAACGCGCGAAGCAACTAGACGAGGACGGGCCGACGCGCAG
CGCTGCCTTCCACCATTGGGACCTCTCTTACTACATGGGCGCCGTTAAAT
CTGCTCGTCACGCCTCTGGAGTAGATGATAAAGGCATCTCTGCGTACCTT
TCTTTGGAAAATTGCTTACGTGGCCTCGCCCTGCTTTGTCACCGTCTCTT
CGGCATCGAGCTTCTAGAAGTCCCGATGGACAAAAACGAAGCCTGGGCCC
CTCCTCAAGCCCGTCTGCAGAAAATGATCCTCCTTCACTCTACTCATGGC
CAGCTTGGCACCATTTACCTAGATCTCTACCCACGTGAAGCCAAATACAC
GCATCATGCTCAATTTACTGTTCAATGTGGGTGCCTCCCCAAGGGCTCTT
CCTCGTACCAACTCCCTGTGGTGGCCTTGGTGTGCAATTTTGCGCCTTCC
GGTTCATATCAAGAAGGACCCGTCCTCCTTACGCATGGAGAGCTTGAGGC
ATTATTTCATGAATTTGGTCACGCCTTGCATTCTCTGCTGTCTCGGACTC
GGTTTCAGCACGTCTCGGGAACGAGGGCCCCTGTCGATTTTGTTGAGACC
CCTAGCCATTTACTCGAGTACTTCGCCTGGGACCAGAGGGTGCTATCCCA
ATTTGCTCATCACCATAAAACAGGTCTGCCGATACCACCGGAATTGACAA
AGGCCTTGCGGGCGGCCAAGAGGGAGTTTGCGGGCTTGGATACCCAGATT
CAGGTGCTTTACTCGTTGGTGGATCAGAAATTGTTCGGGCCGCAGCCACT
GGGGGAAGACCCGACGAGTTCTACTTTTTTGAAGGGGGTTCAGGGGCAGA
TAATGACATTGCTACACTCGGAGGGTACGGTGTGGCATGCAAGGTTTGGG
CATCTGACTGGGTATGGCGCGGGGTACTACGGTTACTTGTATGATCGGGT
GTTTGCCTCGCACATTTGGGAGAGGCTGTTTAAAAATGATCCATGGAGCA
AGGAGGCGGGGGAGAAGGTGTGGCAATCTATGCTCAGACATGGGGGGGGC
AAGGACCCGCACGAGATGCTGAGGGAGGTGTTAGGGGAGGAGCCAGCGTT
GGATAGTTTTTTGGCGGAGTTGGTTGGAGAGGAGAAGTAGGGAG
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Coding sequence (CDS) from alignment at scaffold_8:726796..729089-

>mRNA_4053 ID=mRNA_4053|Name=jgi.p|Nanoce1779_2|586324|organism=Nannochloropsis oceanica|type=CDS|length=2253bp|location=Sequence derived from alignment at scaffold_8:726796..729089- (Nannochloropsis oceanica)
ATGTGGCGCCCGCGAGCGGTGGCGGGTGCGGCGTTGGCCCGTCATAGCAG
AAGCAAGTGTATCCTGACACCAACAGCCTCCATAACGAAGCTGGCATGCC
ACCACGCCACGGCACCACGATGGCGGCGACGCTTGGGCAGGCCCACTACC
TCTCCTCCTCCGATGCCCTTCTCAACGACGACCAACACCGCCAGGACCAG
CAGTACCAGCATCCCCTTGAACCCTGGCCTCTTTGGTGTGGTGGGTCTTC
GTCGCCCCGAAGACTTTTTGCGACTGGCACGCGAGTCAATAAGACGGTGC
GAGGAAATCAAATACAACCTGATGACATGGAAAGTGCCACCAGGGGTGGA
GACGATTCGAGACATGGACGCCATGTCAAACACGCTGTGCATCGCCATCG
ATGCGGCGGAACTCGCGCGCAACGTTCACCATGAGGCTGCTTGGCGAGAG
GCAGCCGAGGAAGCGTTTATAGGTTTGTCGGAATACATCCACGAACTCAA
TACGGACGTGGGACTGTATCAGGCCGTGCGTGCGGTCGTCGAAAACCCTC
TCGTGGTCGCGACGCTAAGCGAAGAAGAAAAACGAACGGCCCAACTTCTC
AAGGCCGAGTTCGAGAGTAGTGGAATCCATCTGCCCGCAGCCGAGCGGCA
AGAAGTTCGAGCCCTCCTCAACGAAATCATTAGCTTGGAGACCATGTTTA
GCAACAATGTCATTTTGGGGCGTCGCTCTTTTCAAGTGAGCAAAGCCGAG
CTCATAGCACAAATGCCCTCTGATGTAATCCAAAACGTCATCCTCCCCCT
CCAGCCCCCTCATCAGCCCTCCCACCTCCTCACCCTCACCACCGACACCG
CTGTATCCAACGCGGTGTTACGCTATGCCCGCGATGAGAATCTCCGCCGA
CGTATGTACCAAGAAGTCAATACCAGCCCGCACGAAAATTTAGATGTTCT
CTCCCGTCTTGTAAAGGGCCGGGATGCTCTGGCAAGGAAGTTGGGGTTCC
CCAGCTATGCCCATCGTTTTCTCGCCGATAAGATGGCCGGACATCCGGAA
GAAGTCGAGCGATTTCTCCTCGCTCTTGCGGACAAAGTGAAGATCAAAGC
CGATCTAGAGCTACAAGTGCTGCAACGCGCGAAGCAACTAGACGAGGACG
GGCCGACGCGCAGCGCTGCCTTCCACCATTGGGACCTCTCTTACTACATG
GGCGCCGTTAAATCTGCTCGTCACGCCTCTGGAGTAGATGATAAAGGCAT
CTCTGCGTACCTTTCTTTGGAAAATTGCTTACGTGGCCTCGCCCTGCTTT
GTCACCGTCTCTTCGGCATCGAGCTTCTAGAAGTCCCGATGGACAAAAAC
GAAGCCTGGGCCCCTCCTCAAGCCCGTCTGCAGAAAATGATCCTCCTTCA
CTCTACTCATGGCCAGCTTGGCACCATTTACCTAGATCTCTACCCACGTG
AAGCCAAATACACGCATCATGCTCAATTTACTGTTCAATGTGGGTGCCTC
CCCAAGGGCTCTTCCTCGTACCAACTCCCTGTGGTGGCCTTGGTGTGCAA
TTTTGCGCCTTCCGGTTCATATCAAGAAGGACCCGTCCTCCTTACGCATG
GAGAGCTTGAGGCATTATTTCATGAATTTGGTCACGCCTTGCATTCTCTG
CTGTCTCGGACTCGGTTTCAGCACGTCTCGGGAACGAGGGCCCCTGTCGA
TTTTGTTGAGACCCCTAGCCATTTACTCGAGTACTTCGCCTGGGACCAGA
GGGTGCTATCCCAATTTGCTCATCACCATAAAACAGGTCTGCCGATACCA
CCGGAATTGACAAAGGCCTTGCGGGCGGCCAAGAGGGAGTTTGCGGGCTT
GGATACCCAGATTCAGGTGCTTTACTCGTTGGTGGATCAGAAATTGTTCG
GGCCGCAGCCACTGGGGGAAGACCCGACGAGTTCTACTTTTTTGAAGGGG
GTTCAGGGGCAGATAATGACATTGCTACACTCGGAGGGTACGGTGTGGCA
TGCAAGGTTTGGGCATCTGACTGGGTATGGCGCGGGGTACTACGGTTACT
TGTATGATCGGGTGTTTGCCTCGCACATTTGGGAGAGGCTGTTTAAAAAT
GATCCATGGAGCAAGGAGGCGGGGGAGAAGGTGTGGCAATCTATGCTCAG
ACATGGGGGGGGCAAGGACCCGCACGAGATGCTGAGGGAGGTGTTAGGGG
AGGAGCCAGCGTTGGATAGTTTTTTGGCGGAGTTGGTTGGAGAGGAGAAG
TAG
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Synonyms
Publications