jgi.p|Nanoce1779_2|665619, mRNA_4052 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|665619
Unique NamemRNA_4052
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1206
Alignment locationscaffold_8:725429..726706 +

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Properties
Property NameValue
TranscriptId665705
TrackFilteredModels2
ProteinId665619
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:725429..726706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|665619gene_4052Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|665619mRNA_4052-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4052CDS_4052Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4052 ID=mRNA_4052|Name=jgi.p|Nanoce1779_2|665619|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp
GTGATGAAGGTGAATCAAATGGATGCTCAAGTACTTGATACGGAGCTGCT
TGATTTGCTGCGAATTCAATTAGGCACAATTTTGGCCCCGCCCTTCTTCC
CACCCGGGTTCATGGACAAGTATAAGCCCGAGCTCAATGCCCTCTTGGAT
CTTCTCCTCTTCCGCTTCACCATATTTCAAAACGATCCCACGCCCGGGAT
GCGCATGCAAAACCTTCGTTTCGTCAATGGGCGCATCCTTGGCACTTCCT
CCTCCACTTTCTCGTCTGCATCTGACATTCATGCCCCACGAGTGAGCCAG
CGTCTGTTGTTGGGTCTGTTGTACATTGGAGGTAAATGGGGATTTGCCCG
ACTGCGACGACATGCCCTCGTGGCAGGATGGGCGGATGAAGCTCAGCAGC
AACAACATCAACAATTCCATCCAGCTGCACAATGGAAGCGCTGGGCCTAC
CGTGCATTGGACCGAGCCGAAAACCTCTTCCGCCTTGCATGGCTTATCAA
TTTCCTGGTGTTCTTGCGTGTGGGTCGTTATCCTTCTTTATTGCAACGAC
TGACGGGGATGCGACTGGTGTATGGGGATGCCTTTGCGGGGGCGAGCCGA
AGTATTAATTTCCAGTTTATGAACAGGCAGTTGCTGTGGGAGCACTTCAC
GCAGCTGGCTTTGTGTGTGGTACCCTTGATAGATTGGGACGGATTAAGAA
GGCAAGTGTCAGGTCTGATCAGACAGAGGAGGTTGGGGGCGGGAGCGGCG
GGTTCGGCGGATGGAGGGGCGAGCATACCGGGGGCCGGCGGGGCGGATGG
GGATATGGAGTGTGTGATGTGCGGGGAGGGGGAGGCACAGACACCTTATG
TCACGGATTGTGGGCATGTGTATTGTTACTACTGCTTGAAGACAGCGTGT
TTGCAGGATGATGCTTTTGCGTGTCCGCGGTGCGGGACGTTTTTTGCGAC
GTCGAAACGGTGGGTCCCTGGGCAGTAGCTTTGGAAGGATGATAGGGACT
GACTGACTAAAGGTGACTTTCCGACGGTAATTAGAATGTACAGTGAGGAA
CACAATTGCGGCGACATGTAAGCGAGCGAGAGAGAATGAATAGGCGAAGA
AGGTAGGGTTTACATAGCGAAAGCGAGACTCGACCGCAAAAAGAATATAA
ACATGGAAACAATAATAAAAATAACAATGAGCAATACTGGGTTCTGAATA
ATCACT
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protein sequence of jgi.p|Nanoce1779_2|665619

>mRNA_4052-protein ID=mRNA_4052-protein|Name=jgi.p|Nanoce1779_2|665619|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MKVNQMDAQVLDTELLDLLRIQLGTILAPPFFPPGFMDKYKPELNALLDL
LLFRFTIFQNDPTPGMRMQNLRFVNGRILGTSSSTFSSASDIHAPRVSQR
LLLGLLYIGGKWGFARLRRHALVAGWADEAQQQQHQQFHPAAQWKRWAYR
ALDRAENLFRLAWLINFLVFLRVGRYPSLLQRLTGMRLVYGDAFAGASRS
INFQFMNRQLLWEHFTQLALCVVPLIDWDGLRRQVSGLIRQRRLGAGAAG
SADGGASIPGAGGADGDMECVMCGEGEAQTPYVTDCGHVYCYYCLKTACL
QDDAFACPRCGTFFATSKRWVPGQ*
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mRNA from alignment at scaffold_8:725429..726706+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4052 ID=mRNA_4052|Name=jgi.p|Nanoce1779_2|665619|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp|location=Sequence derived from alignment at scaffold_8:725429..726706+ (Nannochloropsis oceanica)
GTGATGAAGGTGAATCAAATGGATGCTCAAGTACTTGATACGGAGCTGCT
TGATTTGCTGCGAATTCAATTAGGCACAATTTTGGCCCCGCCCTTCTTCC
CACCCGGGTTCATGGACAAGTATAAGCCCGAGCTCAATGCCCTCTTGGAT
CTTCTCCTCTTCCGCTTCACCATATTTCAAAACGATCCCACGCCCGGGAT
GCGCATGCAAAACCTTCGTTTCGTCAATGGGCGCATCCTTGGCACTTCCT
CCTCCACTTTCTCGTCTGCATCTGACATTCATGCCCCACGAGTGAGCCAG
CGTCTGTTGTTGGGTCTGTTGTACATTGGAGGTAAATGGGGATTTGCCCG
ACTGCGACGACATGCCCTCGTGGCAGGATGGGCGGATGAAGCTCAGCAGC
AACAACATCAACAATTCCATCCAGCTGCAGTAGATCCACATATCGGTGGG
AATGGTGGCAGCAGCGACAGCAGCCGCGGGAGCACTCCTTTACATGGCGA
GCAATGGAAGCGCTGGGCCTACCGTGCATTGGACCGAGCCGAAAACCTCT
TCCGCCTTGCATGGCTTATCAATTTCCTGGTGTTCTTGCGTGTGGGTCGT
TATCCTTCTTTATTGCAACGACTGACGGGGATGCGACTGGTGTATGGGGA
TGCCTTTGCGGGGGCGAGCCGAAGTATTAATTTCCAGTTTATGAACAGGC
AGTTGCTGTGGGAGCACTTCACGCAGCTGGCTTTGTGTGTGGTACCCTTG
ATAGATTGGGACGGATTAAGAAGGCAAGTGTCAGGTCTGATCAGACAGAG
GAGGTTGGGGGCGGGAGCGGCGGGTTCGGCGGATGGAGGGGCGAGCATAC
CGGGGGCCGGCGGGGCGGATGGGGATATGGAGTGTGTGATGTGCGGGGAG
GGGGAGGCACAGACACCTTATGTCACGGATTGTGGGCATGTGTATTGTTA
CTACTGCTTGAAGACAGCGTGTTTGCAGGATGATGCTTTTGCGTGTCCGC
GGTGCGGGACGTTTTTTGCGACGTCGAAACGGTGGGTCCCTGGGCAGTAG
CTTTGGAAGGATGATAGGGACTGACTGACTAAAGGTGACTTTCCGACGGT
AATTAGAATGTACAGTGAGGAACACAATTGCGGCGACATGTAAGCGAGCG
AGAGAGAATGAATAGGCGAAGAAGGTAGGGTTTACATAGCGAAAGCGAGA
CTCGACCGCAAAAAGAATATAAACATGGAAACAATAATAAAAATAACAAT
GAGCAATACTGGGTTCTGAATAATCACT
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Coding sequence (CDS) from alignment at scaffold_8:725429..726706+

>mRNA_4052 ID=mRNA_4052|Name=jgi.p|Nanoce1779_2|665619|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at scaffold_8:725429..726706+ (Nannochloropsis oceanica)
ATGAAGGTGAATCAAATGGATGCTCAAGTACTTGATACGGAGCTGCTTGA
TTTGCTGCGAATTCAATTAGGCACAATTTTGGCCCCGCCCTTCTTCCCAC
CCGGGTTCATGGACAAGTATAAGCCCGAGCTCAATGCCCTCTTGGATCTT
CTCCTCTTCCGCTTCACCATATTTCAAAACGATCCCACGCCCGGGATGCG
CATGCAAAACCTTCGTTTCGTCAATGGGCGCATCCTTGGCACTTCCTCCT
CCACTTTCTCGTCTGCATCTGACATTCATGCCCCACGAGTGAGCCAGCGT
CTGTTGTTGGGTCTGTTGTACATTGGAGGTAAATGGGGATTTGCCCGACT
GCGACGACATGCCCTCGTGGCAGGATGGGCGGATGAAGCTCAGCAGCAAC
AACATCAACAATTCCATCCAGCTGCACAATGGAAGCGCTGGGCCTACCGT
GCATTGGACCGAGCCGAAAACCTCTTCCGCCTTGCATGGCTTATCAATTT
CCTGGTGTTCTTGCGTGTGGGTCGTTATCCTTCTTTATTGCAACGACTGA
CGGGGATGCGACTGGTGTATGGGGATGCCTTTGCGGGGGCGAGCCGAAGT
ATTAATTTCCAGTTTATGAACAGGCAGTTGCTGTGGGAGCACTTCACGCA
GCTGGCTTTGTGTGTGGTACCCTTGATAGATTGGGACGGATTAAGAAGGC
AAGTGTCAGGTCTGATCAGACAGAGGAGGTTGGGGGCGGGAGCGGCGGGT
TCGGCGGATGGAGGGGCGAGCATACCGGGGGCCGGCGGGGCGGATGGGGA
TATGGAGTGTGTGATGTGCGGGGAGGGGGAGGCACAGACACCTTATGTCA
CGGATTGTGGGCATGTGTATTGTTACTACTGCTTGAAGACAGCGTGTTTG
CAGGATGATGCTTTTGCGTGTCCGCGGTGCGGGACGTTTTTTGCGACGTC
GAAACGGTGGGTCCCTGGGCAGTAGATGAAGGTGAATCAAATGGATGCTC
AAGTACTTGATACGGAGCTGCTTGATTTGCTGCGAATTCAATTAGGCACA
ATTTTGGCCCCGCCCTTCTTCCCACCCGGGTTCATGGACAAGTATAAGCC
CGAGCTCAATGCCCTCTTGGATCTTCTCCTCTTCCGCTTCACCATATTTC
AAAACGATCCCACGCCCGGGATGCGCATGCAAAACCTTCGTTTCGTCAAT
GGGCGCATCCTTGGCACTTCCTCCTCCACTTTCTCGTCTGCATCTGACAT
TCATGCCCCACGAGTGAGCCAGCGTCTGTTGTTGGGTCTGTTGTACATTG
GAGGTAAATGGGGATTTGCCCGACTGCGACGACATGCCCTCGTGGCAGGA
TGGGCGGATGAAGCTCAGCAGCAACAACATCAACAATTCCATCCAGCTGC
ACAATGGAAGCGCTGGGCCTACCGTGCATTGGACCGAGCCGAAAACCTCT
TCCGCCTTGCATGGCTTATCAATTTCCTGGTGTTCTTGCGTGTGGGTCGT
TATCCTTCTTTATTGCAACGACTGACGGGGATGCGACTGGTGTATGGGGA
TGCCTTTGCGGGGGCGAGCCGAAGTATTAATTTCCAGTTTATGAACAGGC
AGTTGCTGTGGGAGCACTTCACGCAGCTGGCTTTGTGTGTGGTACCCTTG
ATAGATTGGGACGGATTAAGAAGGCAAGTGTCAGGTCTGATCAGACAGAG
GAGGTTGGGGGCGGGAGCGGCGGGTTCGGCGGATGGAGGGGCGAGCATAC
CGGGGGCCGGCGGGGCGGATGGGGATATGGAGTGTGTGATGTGCGGGGAG
GGGGAGGCACAGACACCTTATGTCACGGATTGTGGGCATGTGTATTGTTA
CTACTGCTTGAAGACAGCGTGTTTGCAGGATGATGCTTTTGCGTGTCCGC
GGTGCGGGACGTTTTTTGCGACGTCGAAACGGTGGGTCCCTGGGCAGTAG
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Synonyms
Publications