jgi.p|Nanoce1779_2|670249, mRNA_4051 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670249
Unique Name	mRNA_4051
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2821
Alignment location	scaffold_8:721919..724739 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670335
Track	FilteredModels2
ProteinId	670249

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:721919..724739 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670249	gene_4051	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670249	mRNA_4051-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4051	CDS_4051	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:721919..724739-
coding sequence from alignment at scaffold_8:721919..724739-

mRNA sequence

>mRNA_4051 ID=mRNA_4051|Name=jgi.p|Nanoce1779_2|670249|organism=Nannochloropsis oceanica|type=mRNA|length=2821bp
ACAGCACGCACAGGCCATACTAGGACGCGCAGACAAGCTCCAGGTGACTG
GTGGCGGCACGGACGCGTTTCACATCGGACATCGGGAAGTCGCGGAAGTC
CAGGCATCCGTCCCGCCCCCGTGTGCAAATTAAAACCAAGAACACCACCT
GCGAGGGAAAATTGGCACCAGCCCTTCTACACACCACTACCCGCACCAGC
GCCAACTCTAGCATTCCTGACATGCCTCAAGCAGTCAAGGCTTTGTGCCG
AGCGGCACGCCAAGGCGACGTGACCCGGGTGGATATGATTTTGCGGCAGG
TCCCCGATGTGGTGAACGAACGAAATCGCGACGGCCGCTCGGCGCTCATC
GTGGCAGTGCGACACGGGCAAGCCGGCGTAGTTGAGCACTTGCTCAGGCA
TGGAGCGGAGGTAAATGGTGCGTCACACCGCTCGGGTGCCACGCCGGTAT
GGCATTGTGCGTGGAAGGGGGAACAGGCCATTTTGCGCCTCCTGTTGGAG
AACGGTGGGGATCCGACAACGGAAGCGACAGATTGCGGCACTCCTTTGAT
GGTGGCTTGTCAGTATGGCCATATCGAATGCGTGCGCCTCTTACTGGATC
AGGCGCCGACTGCGGCTGTGATCAGTGGAATGGATGAAAGTCTTGCCGCT
GCTGTTCCTGCTGCTGCTTCTACTGCCCGTGGCCCTGCCTCTCCAACCAC
TACCACCACAACAGCCGCTGTTGAATCTTCTTCGAGTCCTCCTTCGCCCT
CACCACTTCCCGTCGACATTGACTTTGCTCAGAGCAATTATCAATGCACT
GCCTTGTGGTGGGCATGTCGTTCGGATCGGGAGGAGGTGGTCCGTCTCTT
GCTTGCGCGGGGGGCAGACTTCACGAGAAGAGATTGGAAGGGTCGTACAC
CATTGGATATCGCCCGTGTGAAAAACCATCACGGCTGCCATTCTGCTTTG
GAAGAGGCCCATCGTGCTCTGGCTCTATACAAATATCGGCTCTTGTATGA
TGCCGAGCAGTGTCTCGTGCGGTTGCCCCTGTCCCGCACCCGTCGAGGGA
CATTGCACAGCCGCGCCTCGCACGTCCCTGCTTGCTTGCGTGAACGCTTG
GTCCGCCAGCAGCACTTGCAGCAACAGCAACAACAAGTGCGGCAATGGCA
GCAGGGGAAAGAGGGTGAGAATGAGGGGTTTGAGGGGGAGGGAATGAAAG
AGGGAGGGAAGAAAGTAGTATTTGATGCGATGTTAGGAGGAGGGGAAGCG
GGGTATCTTCCTTGTGTGAATGTCAAACCTTTGAGAAAGGAGGAAGAGGA
TTACAAGGATGATGAGGAGAGAGAGAGGGGGGGCAAGAAGGGGTGCGAAG
GGAGGGGGCGGAAACGGCGACAGAAGAGAGGGAGGACGGGAGGGGAAGAA
AATGGTGGTTCTGGGCGGCTTCGATTGGAGCCTGGGAAAAAGCGCAAGCG
CAACATGGGTGTGAACCATCCTCATTTGGACCACATGCACCACCACAAGG
GGGGATCAGCGGCAGCAGGAAACTTACGGGGCTTCGGTGGTGGTAGAGGG
GGTCGCGGAGGAGAAGGCTCGGGCGAGAACTCCCTATCAGCAGTGCTCTC
CTCCGCTGATTTCACCTCCTCCTCTTCCTCTTGCTCTTCTTCCCAAGACG
AAAGCTCGACGCCTGTCCTTGATCACTTGCCTATGACCCGTCGTAGGGGC
TCACCGATGTATTTCAAGAGGCAGCAGCAGCAGCAACAACAAAAACAACA
GCAGCAAGATGACGAAGAGTTTGAGGACGAGAATGTTGTGCTGGAAGTTG
ACAAAGGCCAAGCGCAGAAGCAGCCCTTGTTGTCCTCCTCGGTCAAAGTA
ACGACTGCAGCGAGAGTAGAACTCAAGCAGCAGCAGCGGCAGCAGCAGCG
ATCCTTCGACGAGGAAGCTACTGTTATGGTATCGCGATTCGTTTTGAATG
ATTTGCCCGAGGAATTGTTTGTGGAGCTGATGTGTCTGATGCGATGAGGG
AGGAAATCAATTCATCGCGTCTTAAGTGAGATAAGAGGAAAGGATAGAAA
GAGCCGGAGGGATGCTATTTCTTGGCATACGATTCAATCGAAGCTGGAGC
TGGAGAATGATCTGTAGTGTAATTGTGGACTGAAGATTGGTATAGCAATA
TGGAGAAATGTGCATACCTAATTTGTGGAGAGGGTAACTTGAGAATGGAG
AGAAGGGCATAACATGGACATCGCATTGTATGTACGAACTTGTATGAAAA
ACAGTATGACGAAAATCTTACAGAAAGAAGCAGGAGGGTCAGAGAAAGTG
GATCGCCGAGGAGTGGGGGGAACGAAAGCGAGGGGGAGAAAGAGAGCTTG
AAAAGAGCAATTTTATAATACATGCGTTTACATGCATGTACAATTATAAG
CCGAATGTCAGAATACTAGCATTGTTTTGCCTCTATACATCCATGTCTGT
TTTCGAAAACTGAAACGCGGGGTTTTGGATTATTGAGTCTCAGGGGTTGG
ACAGGTGTCGCCTTGCAGGCCGGCCCATCGCCCTCGCTTGCATGCCGGCC
CATCGCCCTCACTCCTCCCAACCAAATCGGTACAGATTTGATAAAGCATA
AATGCAGGAGAATTGTCGCCCCTTCAAGCAATTTCTTTCCTTCTCTTAGA
GAGGTCTAGAGCTGCGCAGGAATGAAGAATAGGGTTACTGGCAGATAGGG
CTTCCAACAAATCAAGTTGTCGCACGTGGATCATATCCCTCTCGATATCA
TCTGAGTTCAAATAATGGCGCGTGCCTTCCTCTTACCAGAACACACATTT
ACACCCACACCCATCTACGAC

protein sequence of jgi.p|Nanoce1779_2|670249

>mRNA_4051-protein ID=mRNA_4051-protein|Name=jgi.p|Nanoce1779_2|670249|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MPQAVKALCRAARQGDVTRVDMILRQVPDVVNERNRDGRSALIVAVRHGQ
AGVVEHLLRHGAEVNGASHRSGATPVWHCAWKGEQAILRLLLENGGDPTT
EATDCGTPLMVACQYGHIECVRLLLDQAPTAAVISGMDESLAAAVPAAAS
TARGPASPTTTTTTAAVESSSSPPSPSPLPVDIDFAQSNYQCTALWWACR
SDREEVVRLLLARGADFTRRDWKGRTPLDIARVKNHHGCHSALEEAHRAL
ALYKYRLLYDAEQCLVRLPLSRTRRGTLHSRASHVPACLRERLVRQQHLQ
QQQQQVRQWQQGKEGENEGFEGEGMKEGGKKVVFDAMLGGGEAGYLPCVN
VKPLRKEEEDYKDDEERERGGKKGCEGRGRKRRQKRGRTGGEENGGSGRL
RLEPGKKRKRNMGVNHPHLDHMHHHKGGSAAAGNLRGFGGGRGGRGGEGS
GENSLSAVLSSADFTSSSSSCSSSQDESSTPVLDHLPMTRRRGSPMYFKR
QQQQQQQKQQQQDDEEFEDENVVLEVDKGQAQKQPLLSSSVKVTTAARVE
LKQQQRQQQRSFDEEATVMVSRFVLNDLPEELFVELMCLMR*

mRNA from alignment at scaffold_8:721919..724739-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4051 ID=mRNA_4051|Name=jgi.p|Nanoce1779_2|670249|organism=Nannochloropsis oceanica|type=mRNA|length=2821bp|location=Sequence derived from alignment at scaffold_8:721919..724739- (Nannochloropsis oceanica)
ACAGCACGCACAGGCCATACTAGGACGCGCAGACAAGCTCCAGGTGACTG
GTGGCGGCACGGACGCGTTTCACATCGGACATCGGGAAGTCGCGGAAGTC
CAGGCATCCGTCCCGCCCCCGTGTGCAAATTAAAACCAAGAACACCACCT
GCGAGGGAAAATTGGCACCAGCCCTTCTACACACCACTACCCGCACCAGC
GCCAACTCTAGCATTCCTGACATGCCTCAAGCAGTCAAGGCTTTGTGCCG
AGCGGCACGCCAAGGCGACGTGACCCGGGTGGATATGATTTTGCGGCAGG
TCCCCGATGTGGTGAACGAACGAAATCGCGACGGCCGCTCGGCGCTCATC
GTGGCAGTGCGACACGGGCAAGCCGGCGTAGTTGAGCACTTGCTCAGGCA
TGGAGCGGAGGTAAATGGTGCGTCACACCGCTCGGGTGCCACGCCGGTAT
GGCATTGTGCGTGGAAGGGGGAACAGGCCATTTTGCGCCTCCTGTTGGAG
AACGGTGGGGATCCGACAACGGAAGCGACAGATTGCGGCACTCCTTTGAT
GGTGGCTTGTCAGTATGGCCATATCGAATGCGTGCGCCTCTTACTGGATC
AGGCGCCGACTGCGGCTGTGATCAGTGGAATGGATGAAAGTCTTGCCGCT
GCTGTTCCTGCTGCTGCTTCTACTGCCCGTGGCCCTGCCTCTCCAACCAC
TACCACCACAACAGCCGCTGTTGAATCTTCTTCGAGTCCTCCTTCGCCCT
CACCACTTCCCGTCGACATTGACTTTGCTCAGAGCAATTATCAATGCACT
GCCTTGTGGTGGGCATGTCGTTCGGATCGGGAGGAGGTGGTCCGTCTCTT
GCTTGCGCGGGGGGCAGACTTCACGAGAAGAGATTGGAAGGGTCGTACAC
CATTGGATATCGCCCGTGTGAAAAACCATCACGGCTGCCATTCTGCTTTG
GAAGAGGCCCATCGTGCTCTGGCTCTATACAAATATCGGCTCTTGTATGA
TGCCGAGCAGTGTCTCGTGCGGTTGCCCCTGTCCCGCACCCGTCGAGGGA
CATTGCACAGCCGCGCCTCGCACGTCCCTGCTTGCTTGCGTGAACGCTTG
GTCCGCCAGCAGCACTTGCAGCAACAGCAACAACAAGTGCGGCAATGGCA
GCAGGGGAAAGAGGGTGAGAATGAGGGGTTTGAGGGGGAGGGAATGAAAG
AGGGAGGGAAGAAAGTAGTATTTGATGCGATGTTAGGAGGAGGGGAAGCG
GGGTATCTTCCTTGTGTGAATGTCAAACCTTTGAGAAAGGAGGAAGAGGA
TTACAAGGATGATGAGGAGAGAGAGAGGGGGGGCAAGAAGGGGTGCGAAG
GGAGGGGGCGGAAACGGCGACAGAAGAGAGGGAGGACGGGAGGGGAAGAA
AATGGTGGTTCTGGGCGGCTTCGATTGGAGCCTGGGAAAAAGCGCAAGCG
CAACATGGGTGTGAACCATCCTCATTTGGACCACATGCACCACCACAAGG
GGGGATCAGCGGCAGCAGGAAACTTACGGGGCTTCGGTGGTGGTAGAGGG
GGTCGCGGAGGAGAAGGCTCGGGCGAGAACTCCCTATCAGCAGTGCTCTC
CTCCGCTGATTTCACCTCCTCCTCTTCCTCTTGCTCTTCTTCCCAAGACG
AAAGCTCGACGCCTGTCCTTGATCACTTGCCTATGACCCGTCGTAGGGGC
TCACCGATGTATTTCAAGAGGCAGCAGCAGCAGCAACAACAAAAACAACA
GCAGCAAGATGACGAAGAGTTTGAGGACGAGAATGTTGTGCTGGAAGTTG
ACAAAGGCCAAGCGCAGAAGCAGCCCTTGTTGTCCTCCTCGGTCAAAGTA
ACGACTGCAGCGAGAGTAGAACTCAAGCAGCAGCAGCGGCAGCAGCAGCG
ATCCTTCGACGAGGAAGCTACTGTTATGGTATCGCGATTCGTTTTGAATG
ATTTGCCCGAGGAATTGTTTGTGGAGCTGATGTGTCTGATGCGATGAGGG
AGGAAATCAATTCATCGCGTCTTAAGTGAGATAAGAGGAAAGGATAGAAA
GAGCCGGAGGGATGCTATTTCTTGGCATACGATTCAATCGAAGCTGGAGC
TGGAGAATGATCTGTAGTGTAATTGTGGACTGAAGATTGGTATAGCAATA
TGGAGAAATGTGCATACCTAATTTGTGGAGAGGGTAACTTGAGAATGGAG
AGAAGGGCATAACATGGACATCGCATTGTATGTACGAACTTGTATGAAAA
ACAGTATGACGAAAATCTTACAGAAAGAAGCAGGAGGGTCAGAGAAAGTG
GATCGCCGAGGAGTGGGGGGAACGAAAGCGAGGGGGAGAAAGAGAGCTTG
AAAAGAGCAATTTTATAATACATGCGTTTACATGCATGTACAATTATAAG
CCGAATGTCAGAATACTAGCATTGTTTTGCCTCTATACATCCATGTCTGT
TTTCGAAAACTGAAACGCGGGGTTTTGGATTATTGAGTCTCAGGGGTTGG
ACAGGTGTCGCCTTGCAGGCCGGCCCATCGCCCTCGCTTGCATGCCGGCC
CATCGCCCTCACTCCTCCCAACCAAATCGGTACAGATTTGATAAAGCATA
AATGCAGGAGAATTGTCGCCCCTTCAAGCAATTTCTTTCCTTCTCTTAGA
GAGGTCTAGAGCTGCGCAGGAATGAAGAATAGGGTTACTGGCAGATAGGG
CTTCCAACAAATCAAGTTGTCGCACGTGGATCATATCCCTCTCGATATCA
TCTGAGTTCAAATAATGGCGCGTGCCTTCCTCTTACCAGAACACACATTT
ACACCCACACCCATCTACGAC

Coding sequence (CDS) from alignment at scaffold_8:721919..724739-

>mRNA_4051 ID=mRNA_4051|Name=jgi.p|Nanoce1779_2|670249|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_8:721919..724739- (Nannochloropsis oceanica)
ATGCCTCAAGCAGTCAAGGCTTTGTGCCGAGCGGCACGCCAAGGCGACGT
GACCCGGGTGGATATGATTTTGCGGCAGGTCCCCGATGTGGTGAACGAAC
GAAATCGCGACGGCCGCTCGGCGCTCATCGTGGCAGTGCGACACGGGCAA
GCCGGCGTAGTTGAGCACTTGCTCAGGCATGGAGCGGAGGTAAATGGTGC
GTCACACCGCTCGGGTGCCACGCCGGTATGGCATTGTGCGTGGAAGGGGG
AACAGGCCATTTTGCGCCTCCTGTTGGAGAACGGTGGGGATCCGACAACG
GAAGCGACAGATTGCGGCACTCCTTTGATGGTGGCTTGTCAGTATGGCCA
TATCGAATGCGTGCGCCTCTTACTGGATCAGGCGCCGACTGCGGCTGTGA
TCAGTGGAATGGATGAAAGTCTTGCCGCTGCTGTTCCTGCTGCTGCTTCT
ACTGCCCGTGGCCCTGCCTCTCCAACCACTACCACCACAACAGCCGCTGT
TGAATCTTCTTCGAGTCCTCCTTCGCCCTCACCACTTCCCGTCGACATTG
ACTTTGCTCAGAGCAATTATCAATGCACTGCCTTGTGGTGGGCATGTCGT
TCGGATCGGGAGGAGGTGGTCCGTCTCTTGCTTGCGCGGGGGGCAGACTT
CACGAGAAGAGATTGGAAGGGTCGTACACCATTGGATATCGCCCGTGTGA
AAAACCATCACGGCTGCCATTCTGCTTTGGAAGAGGCCCATCGTGCTCTG
GCTCTATACAAATATCGGCTCTTGTATGATGCCGAGCAGTGTCTCGTGCG
GTTGCCCCTGTCCCGCACCCGTCGAGGGACATTGCACAGCCGCGCCTCGC
ACGTCCCTGCTTGCTTGCGTGAACGCTTGGTCCGCCAGCAGCACTTGCAG
CAACAGCAACAACAAGTGCGGCAATGGCAGCAGGGGAAAGAGGGTGAGAA
TGAGGGGTTTGAGGGGGAGGGAATGAAAGAGGGAGGGAAGAAAGTAGTAT
TTGATGCGATGTTAGGAGGAGGGGAAGCGGGGTATCTTCCTTGTGTGAAT
GTCAAACCTTTGAGAAAGGAGGAAGAGGATTACAAGGATGATGAGGAGAG
AGAGAGGGGGGGCAAGAAGGGGTGCGAAGGGAGGGGGCGGAAACGGCGAC
AGAAGAGAGGGAGGACGGGAGGGGAAGAAAATGGTGGTTCTGGGCGGCTT
CGATTGGAGCCTGGGAAAAAGCGCAAGCGCAACATGGGTGTGAACCATCC
TCATTTGGACCACATGCACCACCACAAGGGGGGATCAGCGGCAGCAGGAA
ACTTACGGGGCTTCGGTGGTGGTAGAGGGGGTCGCGGAGGAGAAGGCTCG
GGCGAGAACTCCCTATCAGCAGTGCTCTCCTCCGCTGATTTCACCTCCTC
CTCTTCCTCTTGCTCTTCTTCCCAAGACGAAAGCTCGACGCCTGTCCTTG
ATCACTTGCCTATGACCCGTCGTAGGGGCTCACCGATGTATTTCAAGAGG
CAGCAGCAGCAGCAACAACAAAAACAACAGCAGCAAGATGACGAAGAGTT
TGAGGACGAGAATGTTGTGCTGGAAGTTGACAAAGGCCAAGCGCAGAAGC
AGCCCTTGTTGTCCTCCTCGGTCAAAGTAACGACTGCAGCGAGAGTAGAA
CTCAAGCAGCAGCAGCGGCAGCAGCAGCGATCCTTCGACGAGGAAGCTAC
TGTTATGGTATCGCGATTCGTTTTGAATGATTTGCCCGAGGAATTGTTTG
TGGAGCTGATGTGTCTGATGCGATGA

Synonyms

Publications