jgi.p|Nanoce1779_2|586314, mRNA_4050 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586314
Unique NamemRNA_4050
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1167
Alignment locationscaffold_8:720086..721923 -

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Properties
Property NameValue
TranscriptId586400
TrackFilteredModels2
ProteinId586314
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:720086..721923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586314gene_4050Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586314mRNA_4050-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4050CDS_4050Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4050 ID=mRNA_4050|Name=jgi.p|Nanoce1779_2|586314|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp
ACGACAGGGCTATACTGCACTCTGTACGTCAGCTGAGGTCATGACGACGG
CGATGAGGAGAAGCGAAGCAGCGCGCGGCTTCGTCCGCCGTGGAGGCGTA
CTCGTCATGTTGATTGTCCTGGTCGGAGCTGCTGTGATGGTAAACGCAAA
CGACAAGACCAGGCCCTTTACGCGCCTCCAATCCACCACGGGCGGGAGCG
GGGACGGACAACCTCAACAACACCCGCAACAAGAAGAGTTGCTTGAGCGG
CAGCAGCAGAGGAGAAGACGACGACAGCAAGAAGCAGCTAGTGGATTCAA
CCAACCCCTCCGACCGAATGAGAAAGTCAAATTCCTGCAAAAGATGGCCA
AGGGCAATGTTGATCCTATGGAATTGTTTACCCGCGGTGTGAACAGCAAG
GGCTTTCAGGTCTTGTTGAAGAACGTGGAAATCCAGCATCGCATTTTGGA
GGAGATGCCTTTATTGGCTGCGTTTGATGGCTTCCGGCAGATTATGGGAA
GACGCTTGAATGATGAGCAGACCGCCGAGGGCTTTACGCGAGGGGTGCAA
AACATTCTAACCTTCGCCAAAGAAGCCTTCGTCAAAATCAAAGATCCGCA
ACAAACTGTTAACACCATCGCAAAGATGGCCGCGGATCCCAACCCTGCCA
TTCAAGATTTGTTCCGGCGGGCGCAGGCGGGAGATAGTAAGGCTGTGGAG
GAACTGCAGGATGTGTTCAATGACTTGCATTTCCCTGGGGTGAACGTACG
GGTGCTGCGGGAGGTGGCGGAGAACCATACTTTTGACAAATTGCTGGCCA
TGCCCGAGATAATGCGATTTATTGATCGTGATGAGACGCTTTCGAAGTTG
TTTCGTTCGGATATCAAGGAGACTTTCTCGTTTAAGGGGCAGGAGAATGG
GATGTTTGGGGCGAGCAAAGAGCAGGCAGCAAGTGGGGCTGCGGCAGCGA
AGGTTGAAAGTTCCACGACGACAACCACAACGACGGTGCCATAAGAACAG
ACCAGGCCAAGGCAAAAGCATGAGCCCGGAAGACCTATTTTTACATTTAT
TGACTTACGTGCCGCTTCAAAAATGTTATTTAATTTACAATAGAGGGGGG
AGAATCTGGTGCATGGGCAAGAAATCATCACAAAGAATGAAAGAATTGCT
TTTCATTGTAAAAAAAA
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protein sequence of jgi.p|Nanoce1779_2|586314

>mRNA_4050-protein ID=mRNA_4050-protein|Name=jgi.p|Nanoce1779_2|586314|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MTTAMRRSEAARGFVRRGGVLVMLIVLVGAAVMVNANDKTRPFTRLQSTT
GGSGDGQPQQHPQQEELLERQQQRRRRRQQEAASGFNQPLRPNEKVKFLQ
KMAKGNVDPMELFTRGVNSKGFQVLLKNVEIQHRILEEMPLLAAFDGFRQ
IMGRRLNDEQTAEGFTRGVQNILTFAKEAFVKIKDPQQTVNTIAKMAADP
NPAIQDLFRRAQAGDSKAVEELQDVFNDLHFPGVNVRVLREVAENHTFDK
LLAMPEIMRFIDRDETLSKLFRSDIKETFSFKGQENGMFGASKEQAASGA
AAAKVESSTTTTTTTVP*
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mRNA from alignment at scaffold_8:720086..721923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4050 ID=mRNA_4050|Name=jgi.p|Nanoce1779_2|586314|organism=Nannochloropsis oceanica|type=mRNA|length=1838bp|location=Sequence derived from alignment at scaffold_8:720086..721923- (Nannochloropsis oceanica)
ACGACAGGGCTATACTGCACTCTGTACGTCAGCTGAGGTCATGACGACGG
CGATGAGGAGAAGCGAAGCAGCGCGCGGCTTCGTCCGCCGTGGAGGCGTA
CTCGTCATGTTGATTGTCCTGGTCGGAGCTGCTGTGATGGTAAACGCAAA
CGACAAGACCAGGCCCTTTACGCGCCTCCAATCCACCACGGGCGGGAGCG
GGGACGGACAACCTCAACAACACCCGCAACAAGAAGAGTTGCTTGAGCGG
CAGCAGCAGAGGAGAAGACGACGACAGCAAGAAGCAGCTAGTGGATTCAA
CCGTAAGTCAAGAGAGGAGAAGGACATGGAGACGCAGTTTTTCAAACCTT
TAACGAAGACGACAGCCAGACCGCAGCCATTTCTTTGCTTGACATGCCTC
CATTTTCTGTGGGATGGGAATTATTGGCAGGGCTTAAGCTCAGATGTGGT
GGGCAAGTATGGGCGCCCAGCATGTCTCCCAAAAACATGTCCTCGTCTGT
CCGGCACGGTGCTTCTCCCTTAACCGCGCATTTATTCCCACAATTTTCTC
ACAGAAGTGCCACGGATGCTGCTTATCGTACCCTGCAGTTGATTGTCAAG
TGCTTAAACACTCATGTACCCAACATTCGCCATCCCTTTTTCCGCCCTCC
ATACTCACTCGCCTCCCTTCTCTAACGGCACCCTCATCTATAGAACCCCT
CCGACCGAATGAGAAAGTCAAATTCCTGCAAAAGATGGCCAAGGGCAATG
TTGATCCTATGGAATTGTTTACCCGCGGTGTGAACAGCAAGGGCTTTCAG
GTCTTGTTGAAGAACGTGGAAATCCAGCATCGCATTTTGGAGGAGATGCC
TTTATTGGCTGCGTTTGATGGCTTCCGGCAGATTATGGGAAGACGCTTGA
ATGATGAGCAGGTATGTCTCAGTATGAGCGAAGGAATAAGAGGTGTGGAG
GGCAGAAGAAGAACGTGGCGAGAAAACTGAGGTCGTATGAGATGACTTGG
GGTGTTATCTGTTCCAGTGGCGCTCGATCATCTCTATAAACCACTTTCGC
ATTCTAAGTACACTTACTATGAGCATATTTTGAGACATAGAATTATAAGC
TATATATGATCAGACGCTAACGAAATCTAATTCGATCTCACCATTCTTAC
CTCCCTCCTTTCTTCCCTCCCTCTCTCATTTTTCCAATCAGACCGCCGAG
GGCTTTACGCGAGGGGTGCAAAACATTCTAACCTTCGCCAAAGAAGCCTT
CGTCAAAATCAAAGATCCGCAACAAACTGTTAACACCATCGCAAAGATGG
CCGCGGATCCCAACCCTGCCATTCAAGATTTGTTCCGGCGGGCGCAGGCG
GGAGATAGTAAGGCTGTGGAGGAACTGCAGGATGTGTTCAATGACTTGCA
TTTCCCTGGGGTGAACGTACGGGTGCTGCGGGAGGTGGCGGAGAACCATA
CTTTTGACAAATTGCTGGCCATGCCCGAGATAATGCGATTTATTGATCGT
GATGAGACGCTTTCGAAGTTGTTTCGTTCGGATATCAAGGAGACTTTCTC
GTTTAAGGGGCAGGAGAATGGGATGTTTGGGGCGAGCAAAGAGCAGGCAG
CAAGTGGGGCTGCGGCAGCGAAGGTTGAAAGTTCCACGACGACAACCACA
ACGACGGTGCCATAAGAACAGACCAGGCCAAGGCAAAAGCATGAGCCCGG
AAGACCTATTTTTACATTTATTGACTTACGTGCCGCTTCAAAAATGTTAT
TTAATTTACAATAGAGGGGGGAGAATCTGGTGCATGGGCAAGAAATCATC
ACAAAGAATGAAAGAATTGCTTTTCATTGTAAAAAAAA
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Coding sequence (CDS) from alignment at scaffold_8:720086..721923-

>mRNA_4050 ID=mRNA_4050|Name=jgi.p|Nanoce1779_2|586314|organism=Nannochloropsis oceanica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_8:720086..721923- (Nannochloropsis oceanica)
ACCGCCGAGGGCTTTACGCGAGGGGTGCAAAACATTCTAACCTTCGCCAA
AGAAGCCTTCGTCAAAATCAAAGATCCGCAACAAACTGTTAACACCATCG
CAAAGATGGCCGCGGATCCCAACCCTGCCATTCAAGATTTGTTCCGGCGG
GCGCAGGCGGGAGATAGTAAGGCTGTGGAGGAACTGCAGGATGTGTTCAA
TGACTTGCATTTCCCTGGGGTGAACGTACGGGTGCTGCGGGAGGTGGCGG
AGAACCATACTTTTGACAAATTGCTGGCCATGCCCGAGATAATGCGATTT
ATTGATCGTGATGAGACGCTTTCGAAGTTGTTTCGTTCGGATATCAAGGA
GACTTTCTCGTTTAAGGGGCAGGAGAATGGGATGTTTGGGGCGAGCAAAG
AGCAGGCAGCAAGTGGGGCTGCGGCAGCGAAGGTTGAAAGTTCCACGACG
ACAACCACAACGACGGTGCCATAAAACCCCTCCGACCGAATGAGAAAGTC
AAATTCCTGCAAAAGATGGCCAAGGGCAATGTTGATCCTATGGAATTGTT
TACCCGCGGTGTGAACAGCAAGGGCTTTCAGGTCTTGTTGAAGAACGTGG
AAATCCAGCATCGCATTTTGGAGGAGATGCCTTTATTGGCTGCGTTTGAT
GGCTTCCGGCAGATTATGGGAAGACGCTTGAATGATGAGCAGATGACGAC
GGCGATGAGGAGAAGCGAAGCAGCGCGCGGCTTCGTCCGCCGTGGAGGCG
TACTCGTCATGTTGATTGTCCTGGTCGGAGCTGCTGTGATGGTAAACGCA
AACGACAAGACCAGGCCCTTTACGCGCCTCCAATCCACCACGGGCGGGAG
CGGGGACGGACAACCTCAACAACACCCGCAACAAGAAGAGTTGCTTGAGC
GGCAGCAGCAGAGGAGAAGACGACGACAGCAAGAAGCAGCTAGTGGATTC
AACCACCGCCGAGGGCTTTACGCGAGGGGTGCAAAACATTCTAACCTTCG
CCAAAGAAGCCTTCGTCAAAATCAAAGATCCGCAACAAACTGTTAACACC
ATCGCAAAGATGGCCGCGGATCCCAACCCTGCCATTCAAGATTTGTTCCG
GCGGGCGCAGGCGGGAGATAGTAAGGCTGTGGAGGAACTGCAGGATGTGT
TCAATGACTTGCATTTCCCTGGGGTGAACGTACGGGTGCTGCGGGAGGTG
GCGGAGAACCATACTTTTGACAAATTGCTGGCCATGCCCGAGATAATGCG
ATTTATTGATCGTGATGAGACGCTTTCGAAGTTGTTTCGTTCGGATATCA
AGGAGACTTTCTCGTTTAAGGGGCAGGAGAATGGGATGTTTGGGGCGAGC
AAAGAGCAGGCAGCAAGTGGGGCTGCGGCAGCGAAGGTTGAAAGTTCCAC
GACGACAACCACAACGACGGTGCCATAAAACCCCTCCGACCGAATGAGAA
AGTCAAATTCCTGCAAAAGATGGCCAAGGGCAATGTTGATCCTATGGAAT
TGTTTACCCGCGGTGTGAACAGCAAGGGCTTTCAGGTCTTGTTGAAGAAC
GTGGAAATCCAGCATCGCATTTTGGAGGAGATGCCTTTATTGGCTGCGTT
TGATGGCTTCCGGCAGATTATGGGAAGACGCTTGAATGATGAGCAGATGA
CGACGGCGATGAGGAGAAGCGAAGCAGCGCGCGGCTTCGTCCGCCGTGGA
GGCGTACTCGTCATGTTGATTGTCCTGGTCGGAGCTGCTGTGATGGTAAA
CGCAAACGACAAGACCAGGCCCTTTACGCGCCTCCAATCCACCACGGGCG
GGAGCGGGGACGGACAACCTCAACAACACCCGCAACAAGAAGAGTTGCTT
GAGCGGCAGCAGCAGAGGAGAAGACGACGACAGCAAGAAGCAGCTAGTGG
ATTCAACCACCGCCGAGGGCTTTACGCGAGGGGTGCAAAACATTCTAACC
TTCGCCAAAGAAGCCTTCGTCAAAATCAAAGATCCGCAACAAACTGTTAA
CACCATCGCAAAGATGGCCGCGGATCCCAACCCTGCCATTCAAGATTTGT
TCCGGCGGGCGCAGGCGGGAGATAGTAAGGCTGTGGAGGAACTGCAGGAT
GTGTTCAATGACTTGCATTTCCCTGGGGTGAACGTACGGGTGCTGCGGGA
GGTGGCGGAGAACCATACTTTTGACAAATTGCTGGCCATGCCCGAGATAA
TGCGATTTATTGATCGTGATGAGACGCTTTCGAAGTTGTTTCGTTCGGAT
ATCAAGGAGACTTTCTCGTTTAAGGGGCAGGAGAATGGGATGTTTGGGGC
GAGCAAAGAGCAGGCAGCAAGTGGGGCTGCGGCAGCGAAGGTTGAAAGTT
CCACGACGACAACCACAACGACGGTGCCATAAAACCCCTCCGACCGAATG
AGAAAGTCAAATTCCTGCAAAAGATGGCCAAGGGCAATGTTGATCCTATG
GAATTGTTTACCCGCGGTGTGAACAGCAAGGGCTTTCAGGTCTTGTTGAA
GAACGTGGAAATCCAGCATCGCATTTTGGAGGAGATGCCTTTATTGGCTG
CGTTTGATGGCTTCCGGCAGATTATGGGAAGACGCTTGAATGATGAGCAG
ATGACGACGGCGATGAGGAGAAGCGAAGCAGCGCGCGGCTTCGTCCGCCG
TGGAGGCGTACTCGTCATGTTGATTGTCCTGGTCGGAGCTGCTGTGATGG
TAAACGCAAACGACAAGACCAGGCCCTTTACGCGCCTCCAATCCACCACG
GGCGGGAGCGGGGACGGACAACCTCAACAACACCCGCAACAAGAAGAGTT
GCTTGAGCGGCAGCAGCAGAGGAGAAGACGACGACAGCAAGAAGCAGCTA
GTGGATTCAACC
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Synonyms
Publications