jgi.p|Nanoce1779_2|577236, mRNA_405 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577236
Unique NamemRNA_405
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1451
Alignment locationscaffold_3:1002486..1004039 -

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Properties
Property NameValue
TranscriptId577322
TrackFilteredModels2
ProteinId577236
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1002486..1004039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577236gene_405Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577236mRNA_405-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_405CDS_405Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_405 ID=mRNA_405|Name=jgi.p|Nanoce1779_2|577236|organism=Nannochloropsis oceanica|type=mRNA|length=1451bp
AACCACAGGATGTTCACCATGCGATGTGGACTCCGGGTCCTCGGACACAA
GGTTTGCAGCGGTAGCAGCGTGACGGCGGCGGCGGCGGCTCGTGGCATGG
CGCCCAAGGCTGCCTTCTCGTCGGCCGCCTCTATCACGGTCGATCTCTCC
AAAGCCTTCGACTTGCACAACCTGGAAGCAGCCCCCCCCACCGAGGCCAC
GGCCACTAAGGAAGAGCTAGTCGAATATCTGCGGCTCATGTACACAATGC
GGCGCATGGAGATCACGTGTGACACTGAGTACAAAGCCCGGACCATCCGT
GGGTTTTGCCACTTGTACGATGGACAGGAAGCCGTGGCGGTGGGGGTAAA
CTCGGCATTGGACTTCAATGATTCATGGATTACCTCTTACCGATGCCATT
GCGTGGCGCTTTCTCGCGGGTCAACGGTGGAGCAAATTATTTCCGAGCTC
TTCGGGTTCAAGGAGGGGACAGTTAAGGGAAAGGGTGGCTCGATGCATTT
TTATAGCAAGAAGCACAATTTTTACGGCGGGCAGGGGATCGTCGGGGCGC
AGGTGCCAGTGGGGACGGGCTTGGCCTTCGCGAACAAATACAATACTCCT
CCCGGGGAGAACATGCCTGTGGCAATTGCGATGTACGGAGACGGGGCAGC
CAACCAGGGCCAGATCTGGGAGGCTGCCAACATGGCGGCGTTGTGGAAGT
TGCCGATGATTTTTTGCATTGAGAATAACCAGTATGGGATGGGGACGTCG
ATTGAGCGGTCAAGCTCCAACACGAGGTACTACACCATGGGGAATAAAAT
ACCCGGAATTCGCATGGATGGCATGAATGTGGTGGCCGTCCGCGAGGGGA
TGAAGTTCGTGAAGGACTTTGTGGGGTCGGGGAACGGCCCGATTTTCGTG
GAGATGAATACTTACCGTTACCACGGGCACTCCATGTCCGACCCGGGCAC
GACCTACCGCAACCGCGACGAGATCGTTCAGACACGCTCCACCCGGGACC
CGATCGAGTGGGTAAAGAAGAACCTGGTCGACCACTCGATGCTGTCTTCG
GATGGTGTCAAGGAGATGGAGAAGGGGATTCGGAAAGAGGTCCAGGATGC
GTTGAAGAAGGCCAAGGCTGGGTCTCAGCCGCCGTTGGAGGAATTGTTCA
GGGATATCTACAGCGCGGATGAGAAGGGCACGAATCAGTACCCGCCTTAC
ATTCGTATGCCTGATCGGACAAAGAGCAGGGAGTTTGCGTAGAGTGTTAG
GAGGAAGGGAGGGACGGAGAGGAGGGTGGACCCCGTGGATGAGTAGGGGT
GTCTTTCCTTGAGGAGTGAGTGAGAGGAAATGATTTTGTGTAGTGAGTGA
CAACGAAACAAACGAGGAAGACGACCATTGCGAATTCGAGTTTCCAACGA
ACGAAGACATGAAAGAAGCACAGAGAGGGAATACATGTTTGTTAGAGAGT
A
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protein sequence of jgi.p|Nanoce1779_2|577236

>mRNA_405-protein ID=mRNA_405-protein|Name=jgi.p|Nanoce1779_2|577236|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MFTMRCGLRVLGHKVCSGSSVTAAAAARGMAPKAAFSSAASITVDLSKAF
DLHNLEAAPPTEATATKEELVEYLRLMYTMRRMEITCDTEYKARTIRGFC
HLYDGQEAVAVGVNSALDFNDSWITSYRCHCVALSRGSTVEQIISELFGF
KEGTVKGKGGSMHFYSKKHNFYGGQGIVGAQVPVGTGLAFANKYNTPPGE
NMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIER
SSSNTRYYTMGNKIPGIRMDGMNVVAVREGMKFVKDFVGSGNGPIFVEMN
TYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLVDHSMLSSDGV
KEMEKGIRKEVQDALKKAKAGSQPPLEELFRDIYSADEKGTNQYPPYIRM
PDRTKSREFA*
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mRNA from alignment at scaffold_3:1002486..1004039-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_405 ID=mRNA_405|Name=jgi.p|Nanoce1779_2|577236|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp|location=Sequence derived from alignment at scaffold_3:1002486..1004039- (Nannochloropsis oceanica)
AACCACAGGATGTTCACCATGCGATGTGGACTCCGGGTCCTCGGACACAA
GGTTTGCAGCGGTAGCAGCGTGACGGCGGCGGCGGCGGCTCGTGGCATGG
CGCCCAAGGCTGCCTTCTCGTCGGCCGCCTCTATCACGGTCGATCTCTCC
AAAGCCTTCGACTTGCACAGTACGTTCTATGATTGCTTGCCAACCTACGT
ATCGCATGCCCCATCCGTGGCTAGACATCACACTCTATCGTTCCATTTGC
ACCTCCCTTCTCTCAATCATAGACCTGGAAGCAGCCCCCCCCACCGAGGC
CACGGCCACTAAGGAAGAGCTAGTCGAATATCTGCGGCTCATGTACACAA
TGCGGCGCATGGAGATCACGTGTGACACTGAGTACAAAGCCCGGACCATC
CGTGGGTTTTGCCACTTGTACGATGGACAGGAAGCCGTGGCGGTGGGGGT
AAACTCGGCATTGGACTTCAATGATTCATGGATTACCTCTTACCGATGCC
ATTGCGTGGCGCTTTCTCGCGGGTCAACGGTGGAGCAAATTATTTCCGAG
CTCTTCGGGTTCAAGGAGGGGACAGTTAAGGGAAAGGGTGGCTCGATGCA
TTTTTATAGCAAGAAGCACAATTTTTACGGCGGGCAGGGGATCGTCGGGG
CGCAGGTGCCAGTGGGGACGGGCTTGGCCTTCGCGAACAAATACAATACT
CCTCCCGGGGAGAACATGCCTGTGGCAATTGCGATGTACGGAGACGGGGC
AGCCAACCAGGGCCAGATCTGGGAGGCTGCCAACATGGCGGCGTTGTGGA
AGTTGCCGATGATTTTTTGCATTGAGAATAACCAGTATGGGATGGGGACG
TCGATTGAGCGGTCAAGCTCCAACACGAGGTACTACACCATGGGGAATAA
AATACCCGGAATTCGCATGGATGGCATGAATGTGGTGGCCGTCCGCGAGG
GGATGAAGTTCGTGAAGGACTTTGTGGGGTCGGGGAACGGCCCGATTTTC
GTGGAGATGAATACTTACCGTTACCACGGGCACTCCATGTCCGACCCGGG
CACGACCTACCGCAACCGCGACGAGATCGTTCAGACACGCTCCACCCGGG
ACCCGATCGAGTGGGTAAAGAAGAACCTGGTCGACCACTCGATGCTGTCT
TCGGATGGTGTCAAGGAGATGGAGAAGGGGATTCGGAAAGAGGTCCAGGA
TGCGTTGAAGAAGGCCAAGGCTGGGTCTCAGCCGCCGTTGGAGGAATTGT
TCAGGGATATCTACAGCGCGGATGAGAAGGGCACGAATCAGTACCCGCCT
TACATTCGTATGCCTGATCGGACAAAGAGCAGGGAGTTTGCGTAGAGTGT
TAGGAGGAAGGGAGGGACGGAGAGGAGGGTGGACCCCGTGGATGAGTAGG
GGTGTCTTTCCTTGAGGAGTGAGTGAGAGGAAATGATTTTGTGTAGTGAG
TGACAACGAAACAAACGAGGAAGACGACCATTGCGAATTCGAGTTTCCAA
CGAACGAAGACATGAAAGAAGCACAGAGAGGGAATACATGTTTGTTAGAG
AGTA
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Coding sequence (CDS) from alignment at scaffold_3:1002486..1004039-

>mRNA_405 ID=mRNA_405|Name=jgi.p|Nanoce1779_2|577236|organism=Nannochloropsis oceanica|type=CDS|length=2466bp|location=Sequence derived from alignment at scaffold_3:1002486..1004039- (Nannochloropsis oceanica)
ACCTGGAAGCAGCCCCCCCCACCGAGGCCACGGCCACTAAGGAAGAGCTA
GTCGAATATCTGCGGCTCATGTACACAATGCGGCGCATGGAGATCACGTG
TGACACTGAGTACAAAGCCCGGACCATCCGTGGGTTTTGCCACTTGTACG
ATGGACAGGAAGCCGTGGCGGTGGGGGTAAACTCGGCATTGGACTTCAAT
GATTCATGGATTACCTCTTACCGATGCCATTGCGTGGCGCTTTCTCGCGG
GTCAACGGTGGAGCAAATTATTTCCGAGCTCTTCGGGTTCAAGGAGGGGA
CAGTTAAGGGAAAGGGTGGCTCGATGCATTTTTATAGCAAGAAGCACAAT
TTTTACGGCGGGCAGGGGATCGTCGGGGCGCAGGTGCCAGTGGGGACGGG
CTTGGCCTTCGCGAACAAATACAATACTCCTCCCGGGGAGAACATGCCTG
TGGCAATTGCGATGTACGGAGACGGGGCAGCCAACCAGGGCCAGATCTGG
GAGGCTGCCAACATGGCGGCGTTGTGGAAGTTGCCGATGATTTTTTGCAT
TGAGAATAACCAGTATGGGATGGGGACGTCGATTGAGCGGTCAAGCTCCA
ACACGAGGTACTACACCATGGGGAATAAAATACCCGGAATTCGCATGGAT
GGCATGAATGTGGTGGCCGTCCGCGAGGGGATGAAGTTCGTGAAGGACTT
TGTGGGGTCGGGGAACGGCCCGATTTTCGTGGAGATGAATACTTACCGTT
ACCACGGGCACTCCATGTCCGACCCGGGCACGACCTACCGCAACCGCGAC
GAGATCGTTCAGACACGCTCCACCCGGGACCCGATCGAGTGGGTAAAGAA
GAACCTGGTCGACCACTCGATGCTGTCTTCGGATGGTGTCAAGGAGATGG
AGAAGGGGATTCGGAAAGAGGTCCAGGATGCGTTGAAGAAGGCCAAGGCT
GGGTCTCAGCCGCCGTTGGAGGAATTGTTCAGGGATATCTACAGCGCGGA
TGAGAAGGGCACGAATCAGTACCCGCCTTACATTCGTATGCCTGATCGGA
CAAAGAGCAGGGAGTTTGCGTAGATGTTCACCATGCGATGTGGACTCCGG
GTCCTCGGACACAAGGTTTGCAGCGGTAGCAGCGTGACGGCGGCGGCGGC
GGCTCGTGGCATGGCGCCCAAGGCTGCCTTCTCGTCGGCCGCCTCTATCA
CGGTCGATCTCTCCAAAGCCTTCGACTTGCACAACCTGGAAGCAGCCCCC
CCCACCGAGGCCACGGCCACTAAGGAAGAGCTAGTCGAATATCTGCGGCT
CATGTACACAATGCGGCGCATGGAGATCACGTGTGACACTGAGTACAAAG
CCCGGACCATCCGTGGGTTTTGCCACTTGTACGATGGACAGGAAGCCGTG
GCGGTGGGGGTAAACTCGGCATTGGACTTCAATGATTCATGGATTACCTC
TTACCGATGCCATTGCGTGGCGCTTTCTCGCGGGTCAACGGTGGAGCAAA
TTATTTCCGAGCTCTTCGGGTTCAAGGAGGGGACAGTTAAGGGAAAGGGT
GGCTCGATGCATTTTTATAGCAAGAAGCACAATTTTTACGGCGGGCAGGG
GATCGTCGGGGCGCAGGTGCCAGTGGGGACGGGCTTGGCCTTCGCGAACA
AATACAATACTCCTCCCGGGGAGAACATGCCTGTGGCAATTGCGATGTAC
GGAGACGGGGCAGCCAACCAGGGCCAGATCTGGGAGGCTGCCAACATGGC
GGCGTTGTGGAAGTTGCCGATGATTTTTTGCATTGAGAATAACCAGTATG
GGATGGGGACGTCGATTGAGCGGTCAAGCTCCAACACGAGGTACTACACC
ATGGGGAATAAAATACCCGGAATTCGCATGGATGGCATGAATGTGGTGGC
CGTCCGCGAGGGGATGAAGTTCGTGAAGGACTTTGTGGGGTCGGGGAACG
GCCCGATTTTCGTGGAGATGAATACTTACCGTTACCACGGGCACTCCATG
TCCGACCCGGGCACGACCTACCGCAACCGCGACGAGATCGTTCAGACACG
CTCCACCCGGGACCCGATCGAGTGGGTAAAGAAGAACCTGGTCGACCACT
CGATGCTGTCTTCGGATGGTGTCAAGGAGATGGAGAAGGGGATTCGGAAA
GAGGTCCAGGATGCGTTGAAGAAGGCCAAGGCTGGGTCTCAGCCGCCGTT
GGAGGAATTGTTCAGGGATATCTACAGCGCGGATGAGAAGGGCACGAATC
AGTACCCGCCTTACATTCGTATGCCTGATCGGACAAAGAGCAGGGAGTTT
GCGTAGATGTTCACCATGCGATGTGGACTCCGGGTCCTCGGACACAAGGT
TTGCAGCGGTAGCAGCGTGACGGCGGCGGCGGCGGCTCGTGGCATGGCGC
CCAAGGCTGCCTTCTCGTCGGCCGCCTCTATCACGGTCGATCTCTCCAAA
GCCTTCGACTTGCACA
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Synonyms
Publications