jgi.p|Nanoce1779_2|586310, mRNA_4048 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586310
Unique Name	mRNA_4048
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2638
Alignment location	scaffold_8:715834..718471 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586396
Track	FilteredModels2
ProteinId	586310

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:715834..718471 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586310	gene_4048	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586310	mRNA_4048-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4048	CDS_4048	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:715834..718471-
coding sequence from alignment at scaffold_8:715834..718471-

mRNA sequence

>mRNA_4048 ID=mRNA_4048|Name=jgi.p|Nanoce1779_2|586310|organism=Nannochloropsis oceanica|type=mRNA|length=2638bp
CTTCGGTGGCACTCTTAACGCAACAACTAGCAGTAGGTTCGGCGGCGGCG
GCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGC
TGCGCCACCTCCATGGTGTCGGGCAAGAAGCAGCAGAATGCCTCCCCCCC
CTGCACTCCTCCCAACCCCGCAATTTTACGTGCCCCCAGCACCCGTCGCA
CACGCGCCAGCAGCCTCCCTATGCCCATGGCGGGAGATACACGTAATCCC
GACCCTGAAGCTGCTTCTTTGTCTTCCCCTTCTCTGATCGGCCATGCCAT
GACGCATAGTACTGCCTCTGCTGCTGGGAGCACCACCTCGTCCATGTCTC
TGACCTCTTTGGGGTGGCACCGTCAGTTTGGGGGGTTGTTACATTCCCCA
GCTAATTCTTCTTCATCTTGTCTTTCGTTCGAGCAGGCACAAGGAAAATG
CCGGGCGTTAAGCATGAACATGAAATTGGAGGGGGAAATGGAAACGACGA
AGAAGTCTTCTTCTATTTCCTCCTTTCCTTCCATCGTCGCAAGCGCGCCT
TTCCCCTCTTCTCCCTCCTCTTCCTCCATGGGCTCTTTCTCCCAAACGTC
TGCACAGCCGATACAGTCCTATATCGTGCCATCTTGTCGCGATAATGCTG
CTGCTGCCACTGCAGCTGGTAGGATGTTGATCCCTCCCGCTCCTTCCTGG
TCGCCTCCTCGCACTAGCGTCTCGCCCCAGTTTTCCTCGCCCTCCCCCTC
CCTCCCACTTTCTTCTTCTCCATCCATGGGTGTCCAGGACAGAGCAACCT
GGCAGGAGGACAGAAGCGTACCTGAGGAAGCCTGGATTTTACACGGCTTA
CGCTTCGCCGCGGGTGCTGGTGGAATTATCGAGTGTTAGAGGGGAGGGAG
ACAGGGAGGGACGGACAGACAGCGGACACACATCCTAGTAGCGTGTCGCT
GCAGTGAACTTTGAGATTTGGCGCTACGGTGAAGGCAGGAGGGTTGATAG
GAAGGATTCGGTCCATTTGTGGTGTTGTGTGAAAAGTAGAATTATAGGGT
GTCGATGCTAGTCGTTGGGAAAGGAGAAGGGATATGTGAATGACTGCTCG
GTGTGAAAGGGAATAAGAGCTTAATTGGATTCCCAGCCGTAGTGTTAGTT
AGCGTAGTAATGGCACCTAGACAATCATAACCGACGAGCACTGGACGGAA
GACGACAGGCGATAATAGATTATCCCAGAAGGTAAAAAAGGCAGGTACAT
GTACTCTTATTTTTTGTGATTCAAAGTTTGTAGGCATCAGGCTAGAGGAA
ACAGTGGTCACCGTGCTCGCCCTTCTCTGGAAGTATTATGACGATGAGAA
GTGACATGTCCTCTTGGAGAACTAGGAAACAAACAGTGTGGCTACCTTGC
AATAGGCTATTGAGTTTTATTAGAAGAGAGAGGAGGATGTTAGGGACAAA
CCTCGTAGAAATGGGGTCGCTAGGATAGCAAAAGGCCTGGGATGAAATGG
TTACCGTGCAAAGAGAAATAGACAGGCAACAGATAGGAGCGTACACAATA
ATAATCTTAAAGCGTGTGTTTGAGAGAAAAGATGTCAGCAGCGGCACTAC
AGGAGAAAAACATAGGACACAGAAGCAAGCGAAAGAGGTACACAGATAAG
GACATGCATGGGTACTTTAGTATCGACGTATGGGGGACGGGAAAGAACAA
GGGGAAGGAAAAAAGAGATGGAAGTGGGGGAAAGAAGCGGGAGAGATTAT
ACACCAAGCGGGGATGGGAAAGTAAGAGGAAAACATCAAGAATGTCAAGT
GCATCCAAAGGAGAAAATCGTCTATGTTAGTTTCGATACACTTATTCTAT
GAAAGAAATGGTCCCCAATATTAGAAATACCATTTGCCGGCCGGGCCCAT
CAAGGGTTCGTCGATGTGTGATCAATGGCATTCTCAATTTCTTCCCCATC
TGTTGTCCCTCCTCATTGCTGGCAGGACACCGCAGCACACCTGCCTCACA
CCATTCTTACGTACCCACTTCACGATAACATACGCAGACCTTCTTAATCG
TAGCCCAAATGACTGTGCCCGGAAACCTTGTCCGTAGATTCCTGGCTATC
TCAGGAGCAGCATCATTGTCTGTCGCCCCGGCATGCGACACGTTATTGCT
GCGGCATTCTGTGCGCCACGCAAAGCGCAACGCACACCCGCAGCCAATCG
TATCAGTGTCACGGGGAAGACGTTTGACCACCGCTCCTTTTCCAGATAAT
GTCGCTGCTGTCAAGGTTACCCGCGCCACCGCTGTCGACAAAGAGGAGGA
AGACGGCAAAGTAGTGGTGGCAGATAAGCACATGATAACAACCATCAAGA
AGCCGGCGTGCGGCCCGGACCCTGTGGAAGAGCACGAAGACGAGATGGAG
GAGATGTTTGTGATGGGCCCATCGGGTACAATGGAGTGGGGGGGGCCCAC
ACGGGGAGGGCAGCACAAGGAGCCGACTCGATATGGAGACTGGGAGCGCA
AGGGCCGGTGCTCTGACTTCAGCTAGAGGGATGGTGATGCATACGGCAGG
GAGTGCTTAAAGGAGGGGTCACTTGGGTTTGTAAAGCAATAAGGGAAAAG
TTGTGTGTCATAAAGTGAAAGAGTCAATCAGTGCGGTG

protein sequence of jgi.p|Nanoce1779_2|586310

>mRNA_4048-protein ID=mRNA_4048-protein|Name=jgi.p|Nanoce1779_2|586310|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MTVPGNLVRRFLAISGAASLSVAPACDTLLLRHSVRHAKRNAHPQPIVSV
SRGRRLTTAPFPDNVAAVKVTRATAVDKEEEDGKVVVADKHMITTIKKPA
CGPDPVEEHEDEMEEMFVMGPSGTMEWGGPTRGGQHKEPTRYGDWERKGR
CSDFS*

mRNA from alignment at scaffold_8:715834..718471-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4048 ID=mRNA_4048|Name=jgi.p|Nanoce1779_2|586310|organism=Nannochloropsis oceanica|type=mRNA|length=2638bp|location=Sequence derived from alignment at scaffold_8:715834..718471- (Nannochloropsis oceanica)
CTTCGGTGGCACTCTTAACGCAACAACTAGCAGTAGGTTCGGCGGCGGCG
GCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGC
TGCGCCACCTCCATGGTGTCGGGCAAGAAGCAGCAGAATGCCTCCCCCCC
CTGCACTCCTCCCAACCCCGCAATTTTACGTGCCCCCAGCACCCGTCGCA
CACGCGCCAGCAGCCTCCCTATGCCCATGGCGGGAGATACACGTAATCCC
GACCCTGAAGCTGCTTCTTTGTCTTCCCCTTCTCTGATCGGCCATGCCAT
GACGCATAGTACTGCCTCTGCTGCTGGGAGCACCACCTCGTCCATGTCTC
TGACCTCTTTGGGGTGGCACCGTCAGTTTGGGGGGTTGTTACATTCCCCA
GCTAATTCTTCTTCATCTTGTCTTTCGTTCGAGCAGGCACAAGGAAAATG
CCGGGCGTTAAGCATGAACATGAAATTGGAGGGGGAAATGGAAACGACGA
AGAAGTCTTCTTCTATTTCCTCCTTTCCTTCCATCGTCGCAAGCGCGCCT
TTCCCCTCTTCTCCCTCCTCTTCCTCCATGGGCTCTTTCTCCCAAACGTC
TGCACAGCCGATACAGTCCTATATCGTGCCATCTTGTCGCGATAATGCTG
CTGCTGCCACTGCAGCTGGTAGGATGTTGATCCCTCCCGCTCCTTCCTGG
TCGCCTCCTCGCACTAGCGTCTCGCCCCAGTTTTCCTCGCCCTCCCCCTC
CCTCCCACTTTCTTCTTCTCCATCCATGGGTGTCCAGGACAGAGCAACCT
GGCAGGAGGACAGAAGCGTACCTGAGGAAGCCTGGATTTTACACGGCTTA
CGCTTCGCCGCGGGTGCTGGTGGAATTATCGAGTGTTAGAGGGGAGGGAG
ACAGGGAGGGACGGACAGACAGCGGACACACATCCTAGTAGCGTGTCGCT
GCAGTGAACTTTGAGATTTGGCGCTACGGTGAAGGCAGGAGGGTTGATAG
GAAGGATTCGGTCCATTTGTGGTGTTGTGTGAAAAGTAGAATTATAGGGT
GTCGATGCTAGTCGTTGGGAAAGGAGAAGGGATATGTGAATGACTGCTCG
GTGTGAAAGGGAATAAGAGCTTAATTGGATTCCCAGCCGTAGTGTTAGTT
AGCGTAGTAATGGCACCTAGACAATCATAACCGACGAGCACTGGACGGAA
GACGACAGGCGATAATAGATTATCCCAGAAGGTAAAAAAGGCAGGTACAT
GTACTCTTATTTTTTGTGATTCAAAGTTTGTAGGCATCAGGCTAGAGGAA
ACAGTGGTCACCGTGCTCGCCCTTCTCTGGAAGTATTATGACGATGAGAA
GTGACATGTCCTCTTGGAGAACTAGGAAACAAACAGTGTGGCTACCTTGC
AATAGGCTATTGAGTTTTATTAGAAGAGAGAGGAGGATGTTAGGGACAAA
CCTCGTAGAAATGGGGTCGCTAGGATAGCAAAAGGCCTGGGATGAAATGG
TTACCGTGCAAAGAGAAATAGACAGGCAACAGATAGGAGCGTACACAATA
ATAATCTTAAAGCGTGTGTTTGAGAGAAAAGATGTCAGCAGCGGCACTAC
AGGAGAAAAACATAGGACACAGAAGCAAGCGAAAGAGGTACACAGATAAG
GACATGCATGGGTACTTTAGTATCGACGTATGGGGGACGGGAAAGAACAA
GGGGAAGGAAAAAAGAGATGGAAGTGGGGGAAAGAAGCGGGAGAGATTAT
ACACCAAGCGGGGATGGGAAAGTAAGAGGAAAACATCAAGAATGTCAAGT
GCATCCAAAGGAGAAAATCGTCTATGTTAGTTTCGATACACTTATTCTAT
GAAAGAAATGGTCCCCAATATTAGAAATACCATTTGCCGGCCGGGCCCAT
CAAGGGTTCGTCGATGTGTGATCAATGGCATTCTCAATTTCTTCCCCATC
TGTTGTCCCTCCTCATTGCTGGCAGGACACCGCAGCACACCTGCCTCACA
CCATTCTTACGTACCCACTTCACGATAACATACGCAGACCTTCTTAATCG
TAGCCCAAATGACTGTGCCCGGAAACCTTGTCCGTAGATTCCTGGCTATC
TCAGGAGCAGCATCATTGTCTGTCGCCCCGGCATGCGACACGTTATTGCT
GCGGCATTCTGTGCGCCACGCAAAGCGCAACGCACACCCGCAGCCAATCG
TATCAGTGTCACGGGGAAGACGTTTGACCACCGCTCCTTTTCCAGATAAT
GTCGCTGCTGTCAAGGTTACCCGCGCCACCGCTGTCGACAAAGAGGAGGA
AGACGGCAAAGTAGTGGTGGCAGATAAGCACATGATAACAACCATCAAGA
AGCCGGCGTGCGGCCCGGACCCTGTGGAAGAGCACGAAGACGAGATGGAG
GAGATGTTTGTGATGGGCCCATCGGGTACAATGGAGTGGGGGGGGCCCAC
ACGGGGAGGGCAGCACAAGGAGCCGACTCGATATGGAGACTGGGAGCGCA
AGGGCCGGTGCTCTGACTTCAGCTAGAGGGATGGTGATGCATACGGCAGG
GAGTGCTTAAAGGAGGGGTCACTTGGGTTTGTAAAGCAATAAGGGAAAAG
TTGTGTGTCATAAAGTGAAAGAGTCAATCAGTGCGGTG

Coding sequence (CDS) from alignment at scaffold_8:715834..718471-

>mRNA_4048 ID=mRNA_4048|Name=jgi.p|Nanoce1779_2|586310|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_8:715834..718471- (Nannochloropsis oceanica)
ATGACTGTGCCCGGAAACCTTGTCCGTAGATTCCTGGCTATCTCAGGAGC
AGCATCATTGTCTGTCGCCCCGGCATGCGACACGTTATTGCTGCGGCATT
CTGTGCGCCACGCAAAGCGCAACGCACACCCGCAGCCAATCGTATCAGTG
TCACGGGGAAGACGTTTGACCACCGCTCCTTTTCCAGATAATGTCGCTGC
TGTCAAGGTTACCCGCGCCACCGCTGTCGACAAAGAGGAGGAAGACGGCA
AAGTAGTGGTGGCAGATAAGCACATGATAACAACCATCAAGAAGCCGGCG
TGCGGCCCGGACCCTGTGGAAGAGCACGAAGACGAGATGGAGGAGATGTT
TGTGATGGGCCCATCGGGTACAATGGAGTGGGGGGGGCCCACACGGGGAG
GGCAGCACAAGGAGCCGACTCGATATGGAGACTGGGAGCGCAAGGGCCGG
TGCTCTGACTTCAGCTAG

Synonyms

Publications