jgi.p|Nanoce1779_2|670247, mRNA_4047 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670247
Unique Name	mRNA_4047
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1636
Alignment location	scaffold_8:713618..715829 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670333
Track	FilteredModels2
ProteinId	670247

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:713618..715829 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670247	gene_4047	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670247	mRNA_4047-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4047	CDS_4047	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:713618..715829+
coding sequence from alignment at scaffold_8:713618..715829+

mRNA sequence

>mRNA_4047 ID=mRNA_4047|Name=jgi.p|Nanoce1779_2|670247|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp
CCACCCACCCGGCCCACATCAACATTGAAACTCCACTTCAACATAAACAG
CTAAGAGAAGGAACAGCTAAAACTTGAAAGGAGGCCCGCGTTTAGCACTT
GTTCCTTTGTCTGGCCACGCGCATCCTTGTCAAAAGTGATCCATGTAACA
CGAGATGCAGCGGCACCGATGATGCATTCAACCTCCCCACTTCCTCAAGT
GCCGGGAGCGGCTCATTCACCACACCCGACGCCCCTCCTACAGAAGAGCA
AGCTTCACGAGCAGATATACGCCAAAGTTCAATCCATAAACCCGTTCAAC
CGTAGGTGAAGCCACGAACAGCGGCATGGATGCCTCCGTAACGGCCGCGG
CGAAGGCCGCGCCCAAGCCCGCCGCAATCCCCCCAACGTCTGCTGCACGT
GTCGTGCGTCGCAAGCCCTACAGCGTCACCCGCACCAAAGATATCATCAT
CGAGGCCTCCAAATGCGCCCCCGCCAAGTTTCAACCTTTAGTCGCCGCTG
CTGCTTGGGTCATCGCTTCGATCGGCCTGGTCTTTTCTCTTGTCGCACCC
GTCTGTAAATACTTCGTCGCAATCCTTTCTCGATTTTATAAGGCTCTCGA
GCCTTGGCACCCGGAAAATCTGCTCGAGGCTGTCTTAGGTCTGTTTATTG
CCTTTTTTGGCGGCAGCTTCTTCCTAGTCGTTGCATCGGCGGAGGCGTGG
CGGGCGGCGACATGGGAGAAGAATAAGAAGGACTTGCGGGTCATCTACGA
GGATGCGGTAAAGGTCCACGATGCCAATAAGAAAGACGCCCTGGTCGACG
CCGACAACAACGGCGTAGCCGACATCGATGAAATGGATGCCACCAAGCTC
TTTGTCCACAAGCTACACATCGTCTTTACCTCTGTCAATCCGGAAAAACT
GGGCTCGGCCGTGGGGAACCTCAACCTGGCTGCCCTTGCGATCATTGCCG
CTTTGAAAGTGCGGTTTGCGAGAATCATTACTTTGGGACGAGCCATGGCG
GAGATACTTTCGCCTGTTGCAAAGAGGATTCTAGGCCCGGCATTGGCTTT
TTGCCTGCCGAAGGATTATCAGCAGTGGGGGGCGCCGTCGGTCGGGTTTT
TGGTCCAAATCGCTGCTATACAGGTTGCCTGGATGCTGCAACGGCTGCTG
GCGACGGTGCATAGTGCGATGAGGGGGGGAATGATGTTCAGTAGGGGGGG
GTTGGCGTACCTGAGGAAGGAGGGGTACATTAAGAAGGAAGATAAGGACA
CGTACGCGGATGAGATCGTGGGGGCTACAACGGCCATTCTAGGTTTTGCC
TTCCAGACGTCTTTGCGTTGGCGCTTGCCGTTCCCTGTTAACATTATCCT
CTTGCCCGTGACCATTTTGGAGACATTTCTTTATTACTACGTTGCGGCGT
AAAGAGGGTAGGCACTAGAGTGAAACTAAGGAGGAACGGGATGTTGGAGA
CATGAGAGGAAGGGAGGACGGGGATGAGGAGGAAGTGAAAAAGGTGGCAA
TGAGGCATGAATGTGTAGCAGTGGTCCTTAGGGTGCGTGGCTGTGTATGT
CTGCTCTGGGTGCGCTGAAACAGAGATCATAGGGAGCGGGGACTACAGGA
AAACAAACGAAAGAAGAGAAAATCAACTTTGAGCAG

protein sequence of jgi.p|Nanoce1779_2|670247

>mRNA_4047-protein ID=mRNA_4047-protein|Name=jgi.p|Nanoce1779_2|670247|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MDASVTAAAKAAPKPAAIPPTSAARVVRRKPYSVTRTKDIIIEASKCAPA
KFQPLVAAAAWVIASIGLVFSLVAPVCKYFVAILSRFYKALEPWHPENLL
EAVLGLFIAFFGGSFFLVVASAEAWRAATWEKNKKDLRVIYEDAVKVHDA
NKKDALVDADNNGVADIDEMDATKLFVHKLHIVFTSVNPEKLGSAVGNLN
LAALAIIAALKVRFARIITLGRAMAEILSPVAKRILGPALAFCLPKDYQQ
WGAPSVGFLVQIAAIQVAWMLQRLLATVHSAMRGGMMFSRGGLAYLRKEG
YIKKEDKDTYADEIVGATTAILGFAFQTSLRWRLPFPVNIILLPVTILET
FLYYYVAA*

mRNA from alignment at scaffold_8:713618..715829+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4047 ID=mRNA_4047|Name=jgi.p|Nanoce1779_2|670247|organism=Nannochloropsis oceanica|type=mRNA|length=2212bp|location=Sequence derived from alignment at scaffold_8:713618..715829+ (Nannochloropsis oceanica)
CCACCCACCCGGCCCACATCAACATTGAAACTCCACTTCAACATAAACAG
CTAAGAGAAGGAACAGCTAAAACTTGAAAGGAGGCCCGCGTTTAGCACTT
GTTCCTTTGTCTGGCCACGCGCATCCTTGTCAAAAGTGATCCATGTAACA
CGAGATGCAGCGGCACCGATGATGCATTCAACCTCCCCACTTCCTCAAGT
GCCGGGAGCGGCTCATTCACCACACCCGACGCCCCTCCTACAGAAGAGCA
AGCTTCACGAGCAGATATACGCCAAAGTTCAATCCATAAACCCGTTCAAC
CGTAGGTGAAGCCACGAACAGCGGCATGGATGCCTCCGTAACGGCCGCGG
CGAAGGCCGCGCCCAAGCCCGCCGCAATCCCCCCAACGTCTGCTGCACGT
GTCGTGCGTCGCAAGCCCTACAGGTACGCCCCTTCTCTCCCCTCTTTGTT
TCACCTAGTGCCACGGATGCTGATGCTGATGATTATCACAAATACGCGGC
GAGACTACGTGACTGCACACAACAGAGAGGCTGGAGGCCAGGATGTGCCA
AACGTGTAGTTCCTCCCCCTCCGTGATCCGTTTCTCACTAACTCAGTACC
TATCCGATCACACGCAGCGTCACCCGCACCAAAGATATCATCATCGAGGC
CTCCAAATGCGCCCCCGCCAAGTTTCAACCTTTAGTCGCCGCTGCTGCTT
GGGTCATCGCTTCGATCGGCCTGGTCTTTTCTCTTGTCGCACCCGTCTGT
AAATACTTCGTCGCAATCCTTTCTCGATTTTATAAGGCTCTCGAGCCTTG
GCACCCGGAAAATCTGCTCGAGGCTGTCTTAGGTCTGTTTATTGCCTTTT
TTGGCGGCAGCTTCTTCCTAGTCGTTGCATCGGCGGAGGCGTGGCGGGCG
GCGACATGGGAGAAGAATAAGAAGGACTTGCGGGTCATCTACGAGGATGC
GGTAAAGGTCCACGATGCCAATAAGAAAGGTGAGATCAGCAAATAGGGTG
TGCGTAAGTGTATGTTATTCTTGTGTTTGTCCGCTCCTTGCCATTCTAAG
GCATGCGTATGTCCGCAAAGGTTGATGGTTTGCCATTTACTCATCTATGT
GATTCTAATGAAGGTCATACATACCCATGCGTGCGTACGATGCTGAGAGC
CCCCTCCTTACTTCCTCATCCATTCTTCCTCCCAGACGCCCTGGTCGACG
CCGACAACAACGGCGTAGCCGACATCGATGAAATGGATGCCACCAAGCTC
TTTGTCCACAAGCTACACATCGTCTTTACCTCTGTCAATCCGGAAAAACT
GGGCTCGGCCGTGGGGAACCTCAACCTGGCTGCCCTTGCGATCATTGCCG
CTTTGAAAGTGCGGTTTGCGAGAATCATTACTTTGGGACGAGCCATGGCG
GAGATACTTTCGCCTGTTGCAAAGAGGATTCTAGGCCCGGCATTGGCTTT
TTGCCTGCCGAAGGATTATCAGCAGTGGGGGGCGCCGTCGGTCGGGTTTT
TGGTCCAAATCGCTGCTATACAGGTTGCCTGGATGCTGCAACGGCTGCTG
GCGACGGTGCATAGTGCGATGAGGGGGGGAATGATGTTCAGTAGGGGGGG
GTTGGCGTACCTGAGGAAGGAGGGGTACATTAAGAAGGAAGATAAGGACA
CGTACGCGGATGAGATCGTGGGGGCTACAACGGCCAGTAAGTGCTCAAGG
GGGAGGAGGGGGAGGAGGGGGACCGAAAAGGGTAAGGATATTTTCCATTT
TTATTCTTTGACTTTCTTGGAGACAAAAGCGTGCTCAGGTTATCCATTTC
TTTGATCTCAAAGCCATGGCTGAATGTGTCGCTTACCACTTTCCTCCCAC
CACCCTCAATAGTTCTAGGTTTTGCCTTCCAGACGTCTTTGCGTTGGCGC
TTGCCGTTCCCTGTTAACATTATCCTCTTGCCCGTGACCATTTTGGAGAC
ATTTCTTTATTACTACGTTGCGGCGTAAAGAGGGTAGGCACTAGAGTGAA
ACTAAGGAGGAACGGGATGTTGGAGACATGAGAGGAAGGGAGGACGGGGA
TGAGGAGGAAGTGAAAAAGGTGGCAATGAGGCATGAATGTGTAGCAGTGG
TCCTTAGGGTGCGTGGCTGTGTATGTCTGCTCTGGGTGCGCTGAAACAGA
GATCATAGGGAGCGGGGACTACAGGAAAACAAACGAAAGAAGAGAAAATC
AACTTTGAGCAG

Coding sequence (CDS) from alignment at scaffold_8:713618..715829+

>mRNA_4047 ID=mRNA_4047|Name=jgi.p|Nanoce1779_2|670247|organism=Nannochloropsis oceanica|type=CDS|length=4308bp|location=Sequence derived from alignment at scaffold_8:713618..715829+ (Nannochloropsis oceanica)
ATGGATGCCTCCGTAACGGCCGCGGCGAAGGCCGCGCCCAAGCCCGCCGC
AATCCCCCCAACGTCTGCTGCACGTGTCGTGCGTCGCAAGCCCTACAGCG
TCACCCGCACCAAAGATATCATCATCGAGGCCTCCAAATGCGCCCCCGCC
AAGTTTCAACCTTTAGTCGCCGCTGCTGCTTGGGTCATCGCTTCGATCGG
CCTGGTCTTTTCTCTTGTCGCACCCGTCTGTAAATACTTCGTCGCAATCC
TTTCTCGATTTTATAAGGCTCTCGAGCCTTGGCACCCGGAAAATCTGCTC
GAGGCTGTCTTAGGTCTGTTTATTGCCTTTTTTGGCGGCAGCTTCTTCCT
AGTCGTTGCATCGGCGGAGGCGTGGCGGGCGGCGACATGGGAGAAGAATA
AGAAGGACTTGCGGGTCATCTACGAGGATGCGGTAAAGGTCCACGATGCC
AATAAGAAAGACGCCCTGGTCGACGCCGACAACAACGGCGTAGCCGACAT
CGATGAAATGGATGCCACCAAGCTCTTTGTCCACAAGCTACACATCGTCT
TTACCTCTGTCAATCCGGAAAAACTGGGCTCGGCCGTGGGGAACCTCAAC
CTGGCTGCCCTTGCGATCATTGCCGCTTTGAAAGTGCGGTTTGCGAGAAT
CATTACTTTGGGACGAGCCATGGCGGAGATACTTTCGCCTGTTGCAAAGA
GGATTCTAGGCCCGGCATTGGCTTTTTGCCTGCCGAAGGATTATCAGCAG
TGGGGGGCGCCGTCGGTCGGGTTTTTGGTCCAAATCGCTGCTATACAGGT
TGCCTGGATGCTGCAACGGCTGCTGGCGACGGTGCATAGTGCGATGAGGG
GGGGAATGATGTTCAGTAGGGGGGGGTTGGCGTACCTGAGGAAGGAGGGG
TACATTAAGAAGGAAGATAAGGACACGTACGCGGATGAGATCGTGGGGGC
TACAACGGCCATTCTAGGTTTTGCCTTCCAGACGTCTTTGCGTTGGCGCT
TGCCGTTCCCTGTTAACATTATCCTCTTGCCCGTGACCATTTTGGAGACA
TTTCTTTATTACTACGTTGCGGCGTAAATGGATGCCTCCGTAACGGCCGC
GGCGAAGGCCGCGCCCAAGCCCGCCGCAATCCCCCCAACGTCTGCTGCAC
GTGTCGTGCGTCGCAAGCCCTACAGCGTCACCCGCACCAAAGATATCATC
ATCGAGGCCTCCAAATGCGCCCCCGCCAAGTTTCAACCTTTAGTCGCCGC
TGCTGCTTGGGTCATCGCTTCGATCGGCCTGGTCTTTTCTCTTGTCGCAC
CCGTCTGTAAATACTTCGTCGCAATCCTTTCTCGATTTTATAAGGCTCTC
GAGCCTTGGCACCCGGAAAATCTGCTCGAGGCTGTCTTAGGTCTGTTTAT
TGCCTTTTTTGGCGGCAGCTTCTTCCTAGTCGTTGCATCGGCGGAGGCGT
GGCGGGCGGCGACATGGGAGAAGAATAAGAAGGACTTGCGGGTCATCTAC
GAGGATGCGGTAAAGGTCCACGATGCCAATAAGAAAGACGCCCTGGTCGA
CGCCGACAACAACGGCGTAGCCGACATCGATGAAATGGATGCCACCAAGC
TCTTTGTCCACAAGCTACACATCGTCTTTACCTCTGTCAATCCGGAAAAA
CTGGGCTCGGCCGTGGGGAACCTCAACCTGGCTGCCCTTGCGATCATTGC
CGCTTTGAAAGTGCGGTTTGCGAGAATCATTACTTTGGGACGAGCCATGG
CGGAGATACTTTCGCCTGTTGCAAAGAGGATTCTAGGCCCGGCATTGGCT
TTTTGCCTGCCGAAGGATTATCAGCAGTGGGGGGCGCCGTCGGTCGGGTT
TTTGGTCCAAATCGCTGCTATACAGGTTGCCTGGATGCTGCAACGGCTGC
TGGCGACGGTGCATAGTGCGATGAGGGGGGGAATGATGTTCAGTAGGGGG
GGGTTGGCGTACCTGAGGAAGGAGGGGTACATTAAGAAGGAAGATAAGGA
CACGTACGCGGATGAGATCGTGGGGGCTACAACGGCCATTCTAGGTTTTG
CCTTCCAGACGTCTTTGCGTTGGCGCTTGCCGTTCCCTGTTAACATTATC
CTCTTGCCCGTGACCATTTTGGAGACATTTCTTTATTACTACGTTGCGGC
GTAAATGGATGCCTCCGTAACGGCCGCGGCGAAGGCCGCGCCCAAGCCCG
CCGCAATCCCCCCAACGTCTGCTGCACGTGTCGTGCGTCGCAAGCCCTAC
AGCGTCACCCGCACCAAAGATATCATCATCGAGGCCTCCAAATGCGCCCC
CGCCAAGTTTCAACCTTTAGTCGCCGCTGCTGCTTGGGTCATCGCTTCGA
TCGGCCTGGTCTTTTCTCTTGTCGCACCCGTCTGTAAATACTTCGTCGCA
ATCCTTTCTCGATTTTATAAGGCTCTCGAGCCTTGGCACCCGGAAAATCT
GCTCGAGGCTGTCTTAGGTCTGTTTATTGCCTTTTTTGGCGGCAGCTTCT
TCCTAGTCGTTGCATCGGCGGAGGCGTGGCGGGCGGCGACATGGGAGAAG
AATAAGAAGGACTTGCGGGTCATCTACGAGGATGCGGTAAAGGTCCACGA
TGCCAATAAGAAAGACGCCCTGGTCGACGCCGACAACAACGGCGTAGCCG
ACATCGATGAAATGGATGCCACCAAGCTCTTTGTCCACAAGCTACACATC
GTCTTTACCTCTGTCAATCCGGAAAAACTGGGCTCGGCCGTGGGGAACCT
CAACCTGGCTGCCCTTGCGATCATTGCCGCTTTGAAAGTGCGGTTTGCGA
GAATCATTACTTTGGGACGAGCCATGGCGGAGATACTTTCGCCTGTTGCA
AAGAGGATTCTAGGCCCGGCATTGGCTTTTTGCCTGCCGAAGGATTATCA
GCAGTGGGGGGCGCCGTCGGTCGGGTTTTTGGTCCAAATCGCTGCTATAC
AGGTTGCCTGGATGCTGCAACGGCTGCTGGCGACGGTGCATAGTGCGATG
AGGGGGGGAATGATGTTCAGTAGGGGGGGGTTGGCGTACCTGAGGAAGGA
GGGGTACATTAAGAAGGAAGATAAGGACACGTACGCGGATGAGATCGTGG
GGGCTACAACGGCCATTCTAGGTTTTGCCTTCCAGACGTCTTTGCGTTGG
CGCTTGCCGTTCCCTGTTAACATTATCCTCTTGCCCGTGACCATTTTGGA
GACATTTCTTTATTACTACGTTGCGGCGTAAATGGATGCCTCCGTAACGG
CCGCGGCGAAGGCCGCGCCCAAGCCCGCCGCAATCCCCCCAACGTCTGCT
GCACGTGTCGTGCGTCGCAAGCCCTACAGCGTCACCCGCACCAAAGATAT
CATCATCGAGGCCTCCAAATGCGCCCCCGCCAAGTTTCAACCTTTAGTCG
CCGCTGCTGCTTGGGTCATCGCTTCGATCGGCCTGGTCTTTTCTCTTGTC
GCACCCGTCTGTAAATACTTCGTCGCAATCCTTTCTCGATTTTATAAGGC
TCTCGAGCCTTGGCACCCGGAAAATCTGCTCGAGGCTGTCTTAGGTCTGT
TTATTGCCTTTTTTGGCGGCAGCTTCTTCCTAGTCGTTGCATCGGCGGAG
GCGTGGCGGGCGGCGACATGGGAGAAGAATAAGAAGGACTTGCGGGTCAT
CTACGAGGATGCGGTAAAGGTCCACGATGCCAATAAGAAAGACGCCCTGG
TCGACGCCGACAACAACGGCGTAGCCGACATCGATGAAATGGATGCCACC
AAGCTCTTTGTCCACAAGCTACACATCGTCTTTACCTCTGTCAATCCGGA
AAAACTGGGCTCGGCCGTGGGGAACCTCAACCTGGCTGCCCTTGCGATCA
TTGCCGCTTTGAAAGTGCGGTTTGCGAGAATCATTACTTTGGGACGAGCC
ATGGCGGAGATACTTTCGCCTGTTGCAAAGAGGATTCTAGGCCCGGCATT
GGCTTTTTGCCTGCCGAAGGATTATCAGCAGTGGGGGGCGCCGTCGGTCG
GGTTTTTGGTCCAAATCGCTGCTATACAGGTTGCCTGGATGCTGCAACGG
CTGCTGGCGACGGTGCATAGTGCGATGAGGGGGGGAATGATGTTCAGTAG
GGGGGGGTTGGCGTACCTGAGGAAGGAGGGGTACATTAAGAAGGAAGATA
AGGACACGTACGCGGATGAGATCGTGGGGGCTACAACGGCCATTCTAGGT
TTTGCCTTCCAGACGTCTTTGCGTTGGCGCTTGCCGTTCCCTGTTAACAT
TATCCTCTTGCCCGTGACCATTTTGGAGACATTTCTTTATTACTACGTTG
CGGCGTAA

Synonyms

Publications