jgi.p|Nanoce1779_2|586297, mRNA_4046 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586297
Unique Name	mRNA_4046
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	837
Alignment location	scaffold_8:712272..713540 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586383
Track	FilteredModels2
ProteinId	586297

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:712272..713540 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586297	gene_4046	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586297	mRNA_4046-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4046	CDS_4046	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:712272..713540+
coding sequence from alignment at scaffold_8:712272..713540+

mRNA sequence

>mRNA_4046 ID=mRNA_4046|Name=jgi.p|Nanoce1779_2|586297|organism=Nannochloropsis oceanica|type=mRNA|length=837bp
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGAGGATGACACTAGC
AGACCCCCATGTATCCTCGTCCATCCTCTCCACTCCCAGGCGCTCTACTG
TCTTACCAGCCTCGTCCTCTCGTGCAGGTTTTTTGCAGATAGTCGCTGCG
CTGACGCTTGGTGGTGGCCTCTTTCTCCCCGGCACCGCAGGTCAGGCACT
TGCCGTACCTGCATCTGAGGGCCCTGATCTCAACCCAATTCTCCTGCAAA
TGGAAGGCAAAACTATCCGATTTGGAGATGCCAAGGGTAAAAAGGCCACA
ATTGTGGTTAATGTGGCATCGCAGTGTGCTCTAACTGGAGGCAACTACCC
GGGCCTGCAAGATTTGTTCGAGAAATACCACGATCAAGGCTTGGAGGTGC
TGGCTTTTCCTTCAAACCAGTTTGGATTTCAAGAGCCCGACCCTGTGGAA
AAAGTACGCAAGGATATGAAGGATCGATTCGGCGTCACATTCCCCATTTA
TAACAAGGTGGACGTGAATGGAGCTGGGGCGCATCCGTTGTTCGCAGCCT
TGAAGAAGTATGAGCCCGAGCTCTCAAATCACAATCCTAAGTTGAGCTGG
AATTTCACTAAATTTCTCATGGACGCGGATGGAGTTCCTGTCCGCCGCTA
CCAGCCAGGCATCGATCCAGAGCAAATGGAGGGAGACATTAAGAGCCTCT
TGGCAGGCAAAAAGCTTCCCTCTGCCCGGAAGACAAGTTTGAATGAGTAC
TAGAAAATTGAGAAGAGAATGCTGATTGGTTGCAAACAAAAGCAAGGGGC
GAATGTGAGACACATTTGTGACTATCGATTAATGTGA

protein sequence of jgi.p|Nanoce1779_2|586297

>mRNA_4046-protein ID=mRNA_4046-protein|Name=jgi.p|Nanoce1779_2|586297|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MRMTLADPHVSSSILSTPRRSTVLPASSSRAGFLQIVAALTLGGGLFLPG
TAGQALAVPASEGPDLNPILLQMEGKTIRFGDAKGKKATIVVNVASQCAL
TGGNYPGLQDLFEKYHDQGLEVLAFPSNQFGFQEPDPVEKVRKDMKDRFG
VTFPIYNKVDVNGAGAHPLFAALKKYEPELSNHNPKLSWNFTKFLMDADG
VPVRRYQPGIDPEQMEGDIKSLLAGKKLPSARKTSLNEY*

mRNA from alignment at scaffold_8:712272..713540+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4046 ID=mRNA_4046|Name=jgi.p|Nanoce1779_2|586297|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp|location=Sequence derived from alignment at scaffold_8:712272..713540+ (Nannochloropsis oceanica)
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATGAGGATGACACTAGC
AGACCCCCATGTATCCTCGTCCATCCTCTCCACTCCCAGGCGCTCTACTG
TCTTACCAGCCTCGTCCTCTCGTGCAGGTTTTTTGCAGATAGTCGCTGCG
CTGACGCTTGGTGGTGGCCTCTTTCTCCCCGGCACCGCAGGTCAGGCACT
TGCCGTACCTGCATCTGAGGGCCCTGATCTCAACCCAATTCTCCTGCAAA
TGGAAGGCAAAACTATCCGATTTGGAGATGCCAAGGGTAAAAAGGCCACA
ATTGTGGTTAATGTGGTATGTTGCCAGGGTTGTGCGAGTGAAAGAGGACA
GGAGGGGGTCTAGAAGGAGCCGAAACATCTTGTTATTTTCTTTTTCGAAC
CTTTTACCCCATTCTCTTCCCACTACAACTCAGGCATCGCAGTGTGCTCT
AACTGGAGGTGAGTGACCTTTTGAGGCGGCAGTACGCGGGGGGAGAGTTG
CATGGATTGCTTTAGAGTACATTACTTGTGCCCTCAACTCAATCTCTTTT
CCTCCACCCCAACTCCCGCAATTATGAAGGCAACTACCCGGGCCTGCAAG
ATTTGTTCGAGAAATACCACGATCAAGGCTTGGAGGTGCTGGCTTTTCCT
TCAAACCAGGTACGTCTATTATCTTGAGTCTCCGGGGGAATGCTACAGTA
TGACTTACGCCGCCCCCCTTCCCTCCCACCATCAGTTTGGATTTCAAGAG
CCCGACCCTGTGGAAAAAGTACGCAAGGATATGAAGGATCGATTCGGCGT
CACATTCCCCATTTATAACAAGGTGGACGTGAATGGAGCTGGGGCGCATC
CGTTGTTCGCAGCCTTGAAGAAGTATGAGCCCGAGCTCTCAAATCACAAT
CCTAAGTTGAGCTGGAATTTCACTGTAAGTTGTTGTTGATAGAGCGCTGC
TTCACCCGAAATTTTCCGGATGGTTGATTGATCTCGACTTTCTTCCCATT
CCATTTAACCTCTTGACCCCCTCCACTCTGACCACGCGTAGAAATTTCTC
ATGGACGCGGATGGAGTTCCTGTCCGCCGCTACCAGCCAGGCATCGATCC
AGAGCAAATGGAGGGAGACATTAAGAGCCTCTTGGCAGGCAAAAAGCTTC
CCTCTGCCCGGAAGACAAGTTTGAATGAGTACTAGAAAATTGAGAAGAGA
ATGCTGATTGGTTGCAAACAAAAGCAAGGGGCGAATGTGAGACACATTTG
TGACTATCGATTAATGTGA

Coding sequence (CDS) from alignment at scaffold_8:712272..713540+

>mRNA_4046 ID=mRNA_4046|Name=jgi.p|Nanoce1779_2|586297|organism=Nannochloropsis oceanica|type=CDS|length=3600bp|location=Sequence derived from alignment at scaffold_8:712272..713540+ (Nannochloropsis oceanica)
ATGAGGATGACACTAGCAGACCCCCATGTATCCTCGTCCATCCTCTCCAC
TCCCAGGCGCTCTACTGTCTTACCAGCCTCGTCCTCTCGTGCAGGTTTTT
TGCAGATAGTCGCTGCGCTGACGCTTGGTGGTGGCCTCTTTCTCCCCGGC
ACCGCAGGTCAGGCACTTGCCGTACCTGCATCTGAGGGCCCTGATCTCAA
CCCAATTCTCCTGCAAATGGAAGGCAAAACTATCCGATTTGGAGATGCCA
AGGGTAAAAAGGCCACAATTGTGGTTAATGTGGCATCGCAGTGTGCTCTA
ACTGGAGGCAACTACCCGGGCCTGCAAGATTTGTTCGAGAAATACCACGA
TCAAGGCTTGGAGGTGCTGGCTTTTCCTTCAAACCAGTTTGGATTTCAAG
AGCCCGACCCTGTGGAAAAAGTACGCAAGGATATGAAGGATCGATTCGGC
GTCACATTCCCCATTTATAACAAGGTGGACGTGAATGGAGCTGGGGCGCA
TCCGTTGTTCGCAGCCTTGAAGAAGTATGAGCCCGAGCTCTCAAATCACA
ATCCTAAGTTGAGCTGGAATTTCACTAAATTTCTCATGGACGCGGATGGA
GTTCCTGTCCGCCGCTACCAGCCAGGCATCGATCCAGAGCAAATGGAGGG
AGACATTAAGAGCCTCTTGGCAGGCAAAAAGCTTCCCTCTGCCCGGAAGA
CAAGTTTGAATGAGTACTAGATGAGGATGACACTAGCAGACCCCCATGTA
TCCTCGTCCATCCTCTCCACTCCCAGGCGCTCTACTGTCTTACCAGCCTC
GTCCTCTCGTGCAGGTTTTTTGCAGATAGTCGCTGCGCTGACGCTTGGTG
GTGGCCTCTTTCTCCCCGGCACCGCAGGTCAGGCACTTGCCGTACCTGCA
TCTGAGGGCCCTGATCTCAACCCAATTCTCCTGCAAATGGAAGGCAAAAC
TATCCGATTTGGAGATGCCAAGGGTAAAAAGGCCACAATTGTGGTTAATG
TGGCATCGCAGTGTGCTCTAACTGGAGGCAACTACCCGGGCCTGCAAGAT
TTGTTCGAGAAATACCACGATCAAGGCTTGGAGGTGCTGGCTTTTCCTTC
AAACCAGTTTGGATTTCAAGAGCCCGACCCTGTGGAAAAAGTACGCAAGG
ATATGAAGGATCGATTCGGCGTCACATTCCCCATTTATAACAAGGTGGAC
GTGAATGGAGCTGGGGCGCATCCGTTGTTCGCAGCCTTGAAGAAGTATGA
GCCCGAGCTCTCAAATCACAATCCTAAGTTGAGCTGGAATTTCACTAAAT
TTCTCATGGACGCGGATGGAGTTCCTGTCCGCCGCTACCAGCCAGGCATC
GATCCAGAGCAAATGGAGGGAGACATTAAGAGCCTCTTGGCAGGCAAAAA
GCTTCCCTCTGCCCGGAAGACAAGTTTGAATGAGTACTAGATGAGGATGA
CACTAGCAGACCCCCATGTATCCTCGTCCATCCTCTCCACTCCCAGGCGC
TCTACTGTCTTACCAGCCTCGTCCTCTCGTGCAGGTTTTTTGCAGATAGT
CGCTGCGCTGACGCTTGGTGGTGGCCTCTTTCTCCCCGGCACCGCAGGTC
AGGCACTTGCCGTACCTGCATCTGAGGGCCCTGATCTCAACCCAATTCTC
CTGCAAATGGAAGGCAAAACTATCCGATTTGGAGATGCCAAGGGTAAAAA
GGCCACAATTGTGGTTAATGTGGCATCGCAGTGTGCTCTAACTGGAGGCA
ACTACCCGGGCCTGCAAGATTTGTTCGAGAAATACCACGATCAAGGCTTG
GAGGTGCTGGCTTTTCCTTCAAACCAGTTTGGATTTCAAGAGCCCGACCC
TGTGGAAAAAGTACGCAAGGATATGAAGGATCGATTCGGCGTCACATTCC
CCATTTATAACAAGGTGGACGTGAATGGAGCTGGGGCGCATCCGTTGTTC
GCAGCCTTGAAGAAGTATGAGCCCGAGCTCTCAAATCACAATCCTAAGTT
GAGCTGGAATTTCACTAAATTTCTCATGGACGCGGATGGAGTTCCTGTCC
GCCGCTACCAGCCAGGCATCGATCCAGAGCAAATGGAGGGAGACATTAAG
AGCCTCTTGGCAGGCAAAAAGCTTCCCTCTGCCCGGAAGACAAGTTTGAA
TGAGTACTAGATGAGGATGACACTAGCAGACCCCCATGTATCCTCGTCCA
TCCTCTCCACTCCCAGGCGCTCTACTGTCTTACCAGCCTCGTCCTCTCGT
GCAGGTTTTTTGCAGATAGTCGCTGCGCTGACGCTTGGTGGTGGCCTCTT
TCTCCCCGGCACCGCAGGTCAGGCACTTGCCGTACCTGCATCTGAGGGCC
CTGATCTCAACCCAATTCTCCTGCAAATGGAAGGCAAAACTATCCGATTT
GGAGATGCCAAGGGTAAAAAGGCCACAATTGTGGTTAATGTGGCATCGCA
GTGTGCTCTAACTGGAGGCAACTACCCGGGCCTGCAAGATTTGTTCGAGA
AATACCACGATCAAGGCTTGGAGGTGCTGGCTTTTCCTTCAAACCAGTTT
GGATTTCAAGAGCCCGACCCTGTGGAAAAAGTACGCAAGGATATGAAGGA
TCGATTCGGCGTCACATTCCCCATTTATAACAAGGTGGACGTGAATGGAG
CTGGGGCGCATCCGTTGTTCGCAGCCTTGAAGAAGTATGAGCCCGAGCTC
TCAAATCACAATCCTAAGTTGAGCTGGAATTTCACTAAATTTCTCATGGA
CGCGGATGGAGTTCCTGTCCGCCGCTACCAGCCAGGCATCGATCCAGAGC
AAATGGAGGGAGACATTAAGAGCCTCTTGGCAGGCAAAAAGCTTCCCTCT
GCCCGGAAGACAAGTTTGAATGAGTACTAGATGAGGATGACACTAGCAGA
CCCCCATGTATCCTCGTCCATCCTCTCCACTCCCAGGCGCTCTACTGTCT
TACCAGCCTCGTCCTCTCGTGCAGGTTTTTTGCAGATAGTCGCTGCGCTG
ACGCTTGGTGGTGGCCTCTTTCTCCCCGGCACCGCAGGTCAGGCACTTGC
CGTACCTGCATCTGAGGGCCCTGATCTCAACCCAATTCTCCTGCAAATGG
AAGGCAAAACTATCCGATTTGGAGATGCCAAGGGTAAAAAGGCCACAATT
GTGGTTAATGTGGCATCGCAGTGTGCTCTAACTGGAGGCAACTACCCGGG
CCTGCAAGATTTGTTCGAGAAATACCACGATCAAGGCTTGGAGGTGCTGG
CTTTTCCTTCAAACCAGTTTGGATTTCAAGAGCCCGACCCTGTGGAAAAA
GTACGCAAGGATATGAAGGATCGATTCGGCGTCACATTCCCCATTTATAA
CAAGGTGGACGTGAATGGAGCTGGGGCGCATCCGTTGTTCGCAGCCTTGA
AGAAGTATGAGCCCGAGCTCTCAAATCACAATCCTAAGTTGAGCTGGAAT
TTCACTAAATTTCTCATGGACGCGGATGGAGTTCCTGTCCGCCGCTACCA
GCCAGGCATCGATCCAGAGCAAATGGAGGGAGACATTAAGAGCCTCTTGG
CAGGCAAAAAGCTTCCCTCTGCCCGGAAGACAAGTTTGAATGAGTACTAG

Synonyms

Publications