jgi.p|Nanoce1779_2|629719, mRNA_4045 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629719
Unique NamemRNA_4045
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2123
Alignment locationscaffold_8:710173..712295 -

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Properties
Property NameValue
TranscriptId629805
TrackFilteredModels2
ProteinId629719
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:710173..712295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629719gene_4045Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629719mRNA_4045-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4045CDS_4045Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4045 ID=mRNA_4045|Name=jgi.p|Nanoce1779_2|629719|organism=Nannochloropsis oceanica|type=mRNA|length=2123bp
GCTGCTGCTGCTGCTGCTGCTGCTACGTGTCCGGGTGAAGGAAGGGTGGG
AAGGCTGGAAGAAGGCTTGCACCGTCACAGCAGCCTGCAGCAGCAGGAGA
CACCATGTGGTAAATTTAGACATAGCCTTCGAGACACCTGTGCGTTGTGG
TGGCAGGAAATGGGTGAGGAAAATGTACCTCAAACGGTCTCGGGCAACTG
ACCAGGTCAGCATGGATGGAGTCGTGGGAATCGCCAGTAACTTCGATTGC
CTCTATCACTGAGACTTTTTCCATACCCCGATACAACGCAACTACCATCC
CCAATCGCAAAGTCAGGGCAGAGACCCTCATGACAGCGCCGCAGCAGCCC
CTCAAAGGCTATCGATGAACGCCCCCTTCTTTACCCTGACTGGTGGGAGC
CCAAGCAGCAGCACAGACTGCAACTGCGATGACGACACTGCGCGGCAGCC
CCGCGTTTACGCCGCCCGCTACCACCAGTTGGCCCTCCTGTGCGCCTTGA
TTTTGACGAACGCCGTGGTATGGGTGGCATTTAGCGCAATCACCCCCGCA
ACCGCTTCTACATTCGGTGTGTCATCGGCTTGGATAAACGTTATAGCATT
GAGCTTTCAAATCTGCTTTTTGCCCGGGACGGTGATAGGTTACTGCTTGA
TGGAACGCTGGGGACTACGGGCCACGCTCTTGATGGGCGGGGTCCTGACG
ACAATGGGTGCAGTGTTGCGATTGACTTCGTTGTATGTGCTGCCGAAATC
GGATGGTGGTGGCGGTGGCGGGGGGTACGTCCTCTTACTCTTTGGCACGT
GTTTGGCGGCGTTGGCACAGCCTTTACTTCTTAACGTTCCGCCTGCATTG
GCAGGAAAATGGTTTGAGGTAAAGCAACGTGATGTTGTGACTAGTCTGGC
ATTCATGTGCTCGCCGTTGGGCAACGCAGTTGGTGTAACTGTAGCTCCTG
CTTTTGTCGGAGGAGGGGATGAAGGGAGTGGTGGCGCGAGCGCTCGGGAT
GGATTGCGGCTGTTTCTATTGGCGCAATTGGTTGTTGTAGCAGCAACTAC
TGTGTGGGCATGGCTTGGGGTAAAGGACAGTCCACCTACTCCACCCAGTC
ACACGGCCGCCCTTCACGTCCAGCAGCAGCAAGATAAGCAATACGCGCGA
GAGCTCCACCATCAACCAAGCATTCCGACGTGGCAAGCGCTCAAAACTGA
CCTGCACCGCTGCCTGGTCCTCAACTCCTCTTTTCGCCTTCTCTTCGTCT
GCTTCGGTTTGGGCCTAGGGTTTTTTAATGCGCTTCTCACCCTTGTTGGT
CAACTCCTCTCCCCCTGCGGGTACAGCGATTCCGAATCGGGTGCGCTCGG
AGGCATATTTATCGGCACTGGCCTCCTAGGTGCCTTTCTCGCCGGCCTTA
TTCTCGACGCCACTCATCACTACAGCCTCTGCTTGAAAGTAGGATTCATG
GGGGCGTGGGTCGCCTCATTCCTTTTTATCTCTGCGCTTCGCCCGAATAA
TTTGGCCTTTCTCGCCACGAGCTTCGCTTTGTTGGGTCTTTGGATGCTAC
CCCTTTTGCCTGTCGCGATTGAAAATGGCGTAGAGATAATGTTTCCGGAG
GTTCCTGAATTTTTCTCCTCTGGCTTGTTGTTGAGTGCGGGGAACTTGGC
TGGGCTGCCATTAGCGTCTTTGTTTTCTCTAGCCATTAATAGGTATGAGG
AAAGAGAAGGGAGTTGTCGAGTGTTTTGGAAGCCGCCAGCAGTCTTTGTG
CTTTGTGTGACGACCTTGTGTGCGTTCCCGATATTGATGTATCGTCCTGC
AAGGTTTGGGAGGTGGGAGGCGGAGAAGCAGCAGCGGCAGCAGCGGCAAC
AGCAGTGCGGGGCTAGCGAGGGAGGGGAGGGGGAAGGACAAATATGAGGA
GAATAAAAGGAAAAGGGCAATCCCAGTGCAAAGGTAAATGAGTGGTTTAA
AAAGATAAAGCGCGATTGAGCGGGAGGGAGGGCATTGAGTGAGTCAATGG
TATGGCAGCAACTGTAAATAAACAAACTACGCGGCAAAATGTGACCCACA
AGGACGGGAAAGGTATGAAGTAGGAAATAATTGTAAAGTGGTAAATGAAA
TGATTTGTGTATGCGGTATTCAT
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protein sequence of jgi.p|Nanoce1779_2|629719

>mRNA_4045-protein ID=mRNA_4045-protein|Name=jgi.p|Nanoce1779_2|629719|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MNAPFFTLTGGSPSSSTDCNCDDDTARQPRVYAARYHQLALLCALILTNA
VVWVAFSAITPATASTFGVSSAWINVIALSFQICFLPGTVIGYCLMERWG
LRATLLMGGVLTTMGAVLRLTSLYVLPKSDGGGGGGGYVLLLFGTCLAAL
AQPLLLNVPPALAGKWFEVKQRDVVTSLAFMCSPLGNAVGVTVAPAFVGG
GDEGSGGASARDGLRLFLLAQLVVVAATTVWAWLGVKDSPPTPPSHTAAL
HVQQQQDKQYARELHHQPSIPTWQALKTDLHRCLVLNSSFRLLFVCFGLG
LGFFNALLTLVGQLLSPCGYSDSESGALGGIFIGTGLLGAFLAGLILDAT
HHYSLCLKVGFMGAWVASFLFISALRPNNLAFLATSFALLGLWMLPLLPV
AIENGVEIMFPEVPEFFSSGLLLSAGNLAGLPLASLFSLAINRYEEREGS
CRVFWKPPAVFVLCVTTLCAFPILMYRPARFGRWEAEKQQRQQRQQQCGA
SEGGEGEGQI*
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mRNA from alignment at scaffold_8:710173..712295-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4045 ID=mRNA_4045|Name=jgi.p|Nanoce1779_2|629719|organism=Nannochloropsis oceanica|type=mRNA|length=2123bp|location=Sequence derived from alignment at scaffold_8:710173..712295- (Nannochloropsis oceanica)
GCTGCTGCTGCTGCTGCTGCTGCTACGTGTCCGGGTGAAGGAAGGGTGGG
AAGGCTGGAAGAAGGCTTGCACCGTCACAGCAGCCTGCAGCAGCAGGAGA
CACCATGTGGTAAATTTAGACATAGCCTTCGAGACACCTGTGCGTTGTGG
TGGCAGGAAATGGGTGAGGAAAATGTACCTCAAACGGTCTCGGGCAACTG
ACCAGGTCAGCATGGATGGAGTCGTGGGAATCGCCAGTAACTTCGATTGC
CTCTATCACTGAGACTTTTTCCATACCCCGATACAACGCAACTACCATCC
CCAATCGCAAAGTCAGGGCAGAGACCCTCATGACAGCGCCGCAGCAGCCC
CTCAAAGGCTATCGATGAACGCCCCCTTCTTTACCCTGACTGGTGGGAGC
CCAAGCAGCAGCACAGACTGCAACTGCGATGACGACACTGCGCGGCAGCC
CCGCGTTTACGCCGCCCGCTACCACCAGTTGGCCCTCCTGTGCGCCTTGA
TTTTGACGAACGCCGTGGTATGGGTGGCATTTAGCGCAATCACCCCCGCA
ACCGCTTCTACATTCGGTGTGTCATCGGCTTGGATAAACGTTATAGCATT
GAGCTTTCAAATCTGCTTTTTGCCCGGGACGGTGATAGGTTACTGCTTGA
TGGAACGCTGGGGACTACGGGCCACGCTCTTGATGGGCGGGGTCCTGACG
ACAATGGGTGCAGTGTTGCGATTGACTTCGTTGTATGTGCTGCCGAAATC
GGATGGTGGTGGCGGTGGCGGGGGGTACGTCCTCTTACTCTTTGGCACGT
GTTTGGCGGCGTTGGCACAGCCTTTACTTCTTAACGTTCCGCCTGCATTG
GCAGGAAAATGGTTTGAGGTAAAGCAACGTGATGTTGTGACTAGTCTGGC
ATTCATGTGCTCGCCGTTGGGCAACGCAGTTGGTGTAACTGTAGCTCCTG
CTTTTGTCGGAGGAGGGGATGAAGGGAGTGGTGGCGCGAGCGCTCGGGAT
GGATTGCGGCTGTTTCTATTGGCGCAATTGGTTGTTGTAGCAGCAACTAC
TGTGTGGGCATGGCTTGGGGTAAAGGACAGTCCACCTACTCCACCCAGTC
ACACGGCCGCCCTTCACGTCCAGCAGCAGCAAGATAAGCAATACGCGCGA
GAGCTCCACCATCAACCAAGCATTCCGACGTGGCAAGCGCTCAAAACTGA
CCTGCACCGCTGCCTGGTCCTCAACTCCTCTTTTCGCCTTCTCTTCGTCT
GCTTCGGTTTGGGCCTAGGGTTTTTTAATGCGCTTCTCACCCTTGTTGGT
CAACTCCTCTCCCCCTGCGGGTACAGCGATTCCGAATCGGGTGCGCTCGG
AGGCATATTTATCGGCACTGGCCTCCTAGGTGCCTTTCTCGCCGGCCTTA
TTCTCGACGCCACTCATCACTACAGCCTCTGCTTGAAAGTAGGATTCATG
GGGGCGTGGGTCGCCTCATTCCTTTTTATCTCTGCGCTTCGCCCGAATAA
TTTGGCCTTTCTCGCCACGAGCTTCGCTTTGTTGGGTCTTTGGATGCTAC
CCCTTTTGCCTGTCGCGATTGAAAATGGCGTAGAGATAATGTTTCCGGAG
GTTCCTGAATTTTTCTCCTCTGGCTTGTTGTTGAGTGCGGGGAACTTGGC
TGGGCTGCCATTAGCGTCTTTGTTTTCTCTAGCCATTAATAGGTATGAGG
AAAGAGAAGGGAGTTGTCGAGTGTTTTGGAAGCCGCCAGCAGTCTTTGTG
CTTTGTGTGACGACCTTGTGTGCGTTCCCGATATTGATGTATCGTCCTGC
AAGGTTTGGGAGGTGGGAGGCGGAGAAGCAGCAGCGGCAGCAGCGGCAAC
AGCAGTGCGGGGCTAGCGAGGGAGGGGAGGGGGAAGGACAAATATGAGGA
GAATAAAAGGAAAAGGGCAATCCCAGTGCAAAGGTAAATGAGTGGTTTAA
AAAGATAAAGCGCGATTGAGCGGGAGGGAGGGCATTGAGTGAGTCAATGG
TATGGCAGCAACTGTAAATAAACAAACTACGCGGCAAAATGTGACCCACA
AGGACGGGAAAGGTATGAAGTAGGAAATAATTGTAAAGTGGTAAATGAAA
TGATTTGTGTATGCGGTATTCAT
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Coding sequence (CDS) from alignment at scaffold_8:710173..712295-

>mRNA_4045 ID=mRNA_4045|Name=jgi.p|Nanoce1779_2|629719|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at scaffold_8:710173..712295- (Nannochloropsis oceanica)
ATGAACGCCCCCTTCTTTACCCTGACTGGTGGGAGCCCAAGCAGCAGCAC
AGACTGCAACTGCGATGACGACACTGCGCGGCAGCCCCGCGTTTACGCCG
CCCGCTACCACCAGTTGGCCCTCCTGTGCGCCTTGATTTTGACGAACGCC
GTGGTATGGGTGGCATTTAGCGCAATCACCCCCGCAACCGCTTCTACATT
CGGTGTGTCATCGGCTTGGATAAACGTTATAGCATTGAGCTTTCAAATCT
GCTTTTTGCCCGGGACGGTGATAGGTTACTGCTTGATGGAACGCTGGGGA
CTACGGGCCACGCTCTTGATGGGCGGGGTCCTGACGACAATGGGTGCAGT
GTTGCGATTGACTTCGTTGTATGTGCTGCCGAAATCGGATGGTGGTGGCG
GTGGCGGGGGGTACGTCCTCTTACTCTTTGGCACGTGTTTGGCGGCGTTG
GCACAGCCTTTACTTCTTAACGTTCCGCCTGCATTGGCAGGAAAATGGTT
TGAGGTAAAGCAACGTGATGTTGTGACTAGTCTGGCATTCATGTGCTCGC
CGTTGGGCAACGCAGTTGGTGTAACTGTAGCTCCTGCTTTTGTCGGAGGA
GGGGATGAAGGGAGTGGTGGCGCGAGCGCTCGGGATGGATTGCGGCTGTT
TCTATTGGCGCAATTGGTTGTTGTAGCAGCAACTACTGTGTGGGCATGGC
TTGGGGTAAAGGACAGTCCACCTACTCCACCCAGTCACACGGCCGCCCTT
CACGTCCAGCAGCAGCAAGATAAGCAATACGCGCGAGAGCTCCACCATCA
ACCAAGCATTCCGACGTGGCAAGCGCTCAAAACTGACCTGCACCGCTGCC
TGGTCCTCAACTCCTCTTTTCGCCTTCTCTTCGTCTGCTTCGGTTTGGGC
CTAGGGTTTTTTAATGCGCTTCTCACCCTTGTTGGTCAACTCCTCTCCCC
CTGCGGGTACAGCGATTCCGAATCGGGTGCGCTCGGAGGCATATTTATCG
GCACTGGCCTCCTAGGTGCCTTTCTCGCCGGCCTTATTCTCGACGCCACT
CATCACTACAGCCTCTGCTTGAAAGTAGGATTCATGGGGGCGTGGGTCGC
CTCATTCCTTTTTATCTCTGCGCTTCGCCCGAATAATTTGGCCTTTCTCG
CCACGAGCTTCGCTTTGTTGGGTCTTTGGATGCTACCCCTTTTGCCTGTC
GCGATTGAAAATGGCGTAGAGATAATGTTTCCGGAGGTTCCTGAATTTTT
CTCCTCTGGCTTGTTGTTGAGTGCGGGGAACTTGGCTGGGCTGCCATTAG
CGTCTTTGTTTTCTCTAGCCATTAATAGGTATGAGGAAAGAGAAGGGAGT
TGTCGAGTGTTTTGGAAGCCGCCAGCAGTCTTTGTGCTTTGTGTGACGAC
CTTGTGTGCGTTCCCGATATTGATGTATCGTCCTGCAAGGTTTGGGAGGT
GGGAGGCGGAGAAGCAGCAGCGGCAGCAGCGGCAACAGCAGTGCGGGGCT
AGCGAGGGAGGGGAGGGGGAAGGACAAATATGA
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Synonyms
Publications