jgi.p|Nanoce1779_2|586290, mRNA_4044 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586290
Unique NamemRNA_4044
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1074
Alignment locationscaffold_8:709099..710172 +

Link to JBrowse

Properties
Property NameValue
TranscriptId586376
TrackFilteredModels2
ProteinId586290
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:709099..710172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586290gene_4044Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586290mRNA_4044-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4044CDS_4044Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4044 ID=mRNA_4044|Name=jgi.p|Nanoce1779_2|586290|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp
ACAGAGAAGATATGCGGTCGTCACAGATCCTCACGCTGGCCGTTGCCCTA
TGCGGAAGCTTCTCGATGACCTTGACGTCCGCCTACCAGTCGCCCTCCTT
CGCCCCTGCTCCTTCCCGTGCTAGTAGGTGGATGCTTGGCAGTCGTTCCG
CGGGTGTTGCCCCCACAGCCACTTTCAACCCTCCTGCTGCCTCAGCTCGT
GGTGCTCGTGGTGGGGCGGGGTCATTGGTGATGATGCCGATTGGTGTGCC
CAAGGTGGCGTACCGCGTGCCGGGCTCGGGAAGTGCGGACTGGGTGGACA
TTTACAACCGTCTGTACCGGGAACGCATTATTTTCCTGGGGCAAGAGATC
GATGACGACTATGCCAATCAGATTATCGGTGTACTCTTGTACTTGGATCA
GGAGGATAGCTCCCGGCCGATTTATATGTACATCAATTGCCCCGGTGGCT
CTGTGATTGCAGGGTTGGCTATCTTTGACGTGATGCAGCTTATTCGCTCC
GAGATTGTCACAATCAACATTGGCATGGCAGCATCCATGGCCTCGTTTTT
GCTAGCGGCGGGAAAGAAGGGGAAGCGTTTGGCTTTGCCGCATTCGCGGG
TAATGATTCATCAGCCTATGGGCGGGGCACAAGGCCAGGCAGAGGATATT
AAGGTTGAAGCTGCGCAAATTTTGCGGATTAAAAAGAATCTGGTGGGGAT
GTATAGCAAAATGACGGGGAGGACCACGGAGCAGATTGTGATTGATTTGG
ACAGGGACAATTACTTGTCAGCGCAGGAGGCTCTGGACCACGGGTTGATC
GATGAGATTGTGGAGTTGGAAAAGGCCATGGAGAGGGAGGAGAACCCTAA
TGTTAACTTGGACCCCGTCAGGGCCTTTGCAGGGGTGGCGAAGGACGATG
ACCCATTGAAGTACTTGCCTTAGATAGCAAGAAGGACCAGGGAAGGTTAC
GGAAGGAGAGAGAGGTGGAAGGGCGGATTAGGGTGGGAAAAGAGAAAGAG
AAGGTGGGTGAGAAAAGCTTTTTACTGGAGCAACGGAACAGAAAGAAAAG
CAGACCGCCAAATCTATTGGAAAC
back to top

protein sequence of jgi.p|Nanoce1779_2|586290

>mRNA_4044-protein ID=mRNA_4044-protein|Name=jgi.p|Nanoce1779_2|586290|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MRSSQILTLAVALCGSFSMTLTSAYQSPSFAPAPSRASRWMLGSRSAGVA
PTATFNPPAASARGARGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNR
LYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIA
GLAIFDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIH
QPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRTTEQIVIDLDRDN
YLSAQEALDHGLIDEIVELEKAMEREENPNVNLDPVRAFAGVAKDDDPLK
YLP*
back to top

mRNA from alignment at scaffold_8:709099..710172+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4044 ID=mRNA_4044|Name=jgi.p|Nanoce1779_2|586290|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp|location=Sequence derived from alignment at scaffold_8:709099..710172+ (Nannochloropsis oceanica)
ACAGAGAAGATATGCGGTCGTCACAGATCCTCACGCTGGCCGTTGCCCTA
TGCGGAAGCTTCTCGATGACCTTGACGTCCGCCTACCAGTCGCCCTCCTT
CGCCCCTGCTCCTTCCCGTGCTAGTAGGTGGATGCTTGGCAGTCGTTCCG
CGGGTGTTGCCCCCACAGCCACTTTCAACCCTCCTGCTGCCTCAGCTCGT
GGTGCTCGTGGTGGGGCGGGGTCATTGGTGATGATGCCGATTGGTGTGCC
CAAGGTGGCGTACCGCGTGCCGGGCTCGGGAAGTGCGGACTGGGTGGACA
TTTACAACCGTCTGTACCGGGAACGCATTATTTTCCTGGGGCAAGAGATC
GATGACGACTATGCCAATCAGATTATCGGTGTACTCTTGTACTTGGATCA
GGAGGATAGCTCCCGGCCGATTTATATGTACATCAATTGCCCCGGTGGCT
CTGTGATTGCAGGGTTGGCTATCTTTGACGTGATGCAGCTTATTCGCTCC
GAGATTGTCACAATCAACATTGGCATGGCAGCATCCATGGCCTCGTTTTT
GCTAGCGGCGGGAAAGAAGGGGAAGCGTTTGGCTTTGCCGCATTCGCGGG
TAATGATTCATCAGCCTATGGGCGGGGCACAAGGCCAGGCAGAGGATATT
AAGGTTGAAGCTGCGCAAATTTTGCGGATTAAAAAGAATCTGGTGGGGAT
GTATAGCAAAATGACGGGGAGGACCACGGAGCAGATTGTGATTGATTTGG
ACAGGGACAATTACTTGTCAGCGCAGGAGGCTCTGGACCACGGGTTGATC
GATGAGATTGTGGAGTTGGAAAAGGCCATGGAGAGGGAGGAGAACCCTAA
TGTTAACTTGGACCCCGTCAGGGCCTTTGCAGGGGTGGCGAAGGACGATG
ACCCATTGAAGTACTTGCCTTAGATAGCAAGAAGGACCAGGGAAGGTTAC
GGAAGGAGAGAGAGGTGGAAGGGCGGATTAGGGTGGGAAAAGAGAAAGAG
AAGGTGGGTGAGAAAAGCTTTTTACTGGAGCAACGGAACAGAAAGAAAAG
CAGACCGCCAAATCTATTGGAAAC
back to top

Coding sequence (CDS) from alignment at scaffold_8:709099..710172+

>mRNA_4044 ID=mRNA_4044|Name=jgi.p|Nanoce1779_2|586290|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_8:709099..710172+ (Nannochloropsis oceanica)
ATGCGGTCGTCACAGATCCTCACGCTGGCCGTTGCCCTATGCGGAAGCTT
CTCGATGACCTTGACGTCCGCCTACCAGTCGCCCTCCTTCGCCCCTGCTC
CTTCCCGTGCTAGTAGGTGGATGCTTGGCAGTCGTTCCGCGGGTGTTGCC
CCCACAGCCACTTTCAACCCTCCTGCTGCCTCAGCTCGTGGTGCTCGTGG
TGGGGCGGGGTCATTGGTGATGATGCCGATTGGTGTGCCCAAGGTGGCGT
ACCGCGTGCCGGGCTCGGGAAGTGCGGACTGGGTGGACATTTACAACCGT
CTGTACCGGGAACGCATTATTTTCCTGGGGCAAGAGATCGATGACGACTA
TGCCAATCAGATTATCGGTGTACTCTTGTACTTGGATCAGGAGGATAGCT
CCCGGCCGATTTATATGTACATCAATTGCCCCGGTGGCTCTGTGATTGCA
GGGTTGGCTATCTTTGACGTGATGCAGCTTATTCGCTCCGAGATTGTCAC
AATCAACATTGGCATGGCAGCATCCATGGCCTCGTTTTTGCTAGCGGCGG
GAAAGAAGGGGAAGCGTTTGGCTTTGCCGCATTCGCGGGTAATGATTCAT
CAGCCTATGGGCGGGGCACAAGGCCAGGCAGAGGATATTAAGGTTGAAGC
TGCGCAAATTTTGCGGATTAAAAAGAATCTGGTGGGGATGTATAGCAAAA
TGACGGGGAGGACCACGGAGCAGATTGTGATTGATTTGGACAGGGACAAT
TACTTGTCAGCGCAGGAGGCTCTGGACCACGGGTTGATCGATGAGATTGT
GGAGTTGGAAAAGGCCATGGAGAGGGAGGAGAACCCTAATGTTAACTTGG
ACCCCGTCAGGGCCTTTGCAGGGGTGGCGAAGGACGATGACCCATTGAAG
TACTTGCCTTAG
back to top
Synonyms
Publications