jgi.p|Nanoce1779_2|422968, mRNA_4043 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|422968
Unique Name	mRNA_4043
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1383
Alignment location	scaffold_8:707002..708885 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	423054
Track	FilteredModels2
ProteinId	422968

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:707002..708885 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|422968	gene_4043	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|422968	mRNA_4043-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4043	CDS_4043	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:707002..708885+
coding sequence from alignment at scaffold_8:707002..708885+

mRNA sequence

>mRNA_4043 ID=mRNA_4043|Name=jgi.p|Nanoce1779_2|422968|organism=Nannochloropsis oceanica|type=mRNA|length=1383bp
ACACCGCACAGGGCCTCTGCATGCGTCAGAGTCGCCTGTACGCCTTCGTC
TCATCCATCATGAGCAGAGGCAGCCGCAACGGCAGCGGCATTTCCTGCAC
GGCATCATTGAACCCCTCCAGTCCCTTCTCCTCTTCGGCCGATGGCTATG
TCAACCACCGCGTGGTTATCAATGACCCCGTTGCGTTTCAGGTTAAGAAG
GAGAAGCTTACAATGGACGGCCCTAGCAAACTTCAGCTTCCTTTCCCCAC
CCACTTCCCATCCATACTCCGTCCTTCCCCTTCCTCTCTTCCCCATAGCT
ACTCTTTGACTGGGACTTTACGATGACACACTTTTTCTTGGATGGACGCC
GGGCCTGCAGCTGCCACAAAGCAATTGAGGACTGCGACTTGCTTCCCGCA
TCCTACCACGACAAAGCTCAAGCCCTCCAGACCTTCTACTACGCCAAGGA
GGTCGACCCTTCACTCACACTTGGCCAAAAAATCCCTTTCATGGAAGACT
GGGTCCGGGAGGCCCACGAGCTATTGATCGAGTACAATTTTCGTCGGTCT
CTCCTCCCCACTGCTGTCCGAAACGCCCACCTCGCCGTGAGGGAGGGATG
CCAAGAAATCATGGATGTCAGTGCACGGGCCGCGGTGCCTCTATTGATAT
TTTCGGCAGGGATCGCTGATGTGTTGGAGGAGGTGTGTCGGCAGCAGTTG
TCCAAGCCCTTGCCGGACACGGTGCATGTCGTGTCGAATCGGATGCTGTT
TTCTTCTATTTCCTCGTCCAACACAAAAGAAAGAAACCAAGGGGAAGAAA
AAGATAAAGAGGTGTTGGTCGGCTTTACTGAGCCCGTCTTTCACGTATTT
AACAAGCGAGCGGCGAGCGTGCTAGACTCCTCCTCTTACTTTCACCAAAC
TGATTACGAACAACGAAGGAATGTGTTGCTGGTGGGGGACAGCCTGGGAG
ACCTGCACATGAGTGATGGGCTGGACGCGAAGGAGATTTTGAGGATTGGG
TTCTTGAATGATCGGGTGGAAGAGCGGTTGGACGAATACAGCCAAAGGTT
CGACGTAGTACTACTTGGTGACGGGGATTTAAGCTATGTGATTGCATTGC
TAAACGAACTTGTAGGAGAGGGCGAGGGTGGTGCCGGCGGAGGGAATGGT
GCATCTTGAGATATAATGATGGTGACAGGATGACTGATGGACATAGCCTG
TATTGAATCGTGAACTATAGATTTTCAATACGTGATACAAGCAAATTGTG
ACAGCTCACTCCTGTCCTGCTTTCATGTTTTTTTTTGGGGGGGGTTACTT
CGCCCTCTTCACTTCGGTGAAATCATGTCGCTCAGTCACCCGGATACTGC
CCATCCCATCTGCGAACCACCGTGCCATGCTGT

protein sequence of jgi.p|Nanoce1779_2|422968

>mRNA_4043-protein ID=mRNA_4043-protein|Name=jgi.p|Nanoce1779_2|422968|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MTHFFLDGRRACSCHKAIEDCDLLPASYHDKAQALQTFYYAKEVDPSLTL
GQKIPFMEDWVREAHELLIEYNFRRSLLPTAVRNAHLAVREGCQEIMDVS
ARAAVPLLIFSAGIADVLEEVCRQQLSKPLPDTVHVVSNRMLFSSISSSN
TKERNQGEEKDKEVLVGFTEPVFHVFNKRAASVLDSSSYFHQTDYEQRRN
VLLVGDSLGDLHMSDGLDAKEILRIGFLNDRVEERLDEYSQRFDVVLLGD
GDLSYVIALLNELVGEGEGGAGGGNGAS*

mRNA from alignment at scaffold_8:707002..708885+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4043 ID=mRNA_4043|Name=jgi.p|Nanoce1779_2|422968|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp|location=Sequence derived from alignment at scaffold_8:707002..708885+ (Nannochloropsis oceanica)
ACACCGCACAGGGCCTCTGCATGCGTCAGAGTCGCCTGTACGCCTTCGTC
TCATCCATCATGAGCAGAGGCAGCCGCAACGGCAGCGGCATTTCCTGCAC
GGTACGTCCACCCACATTCCTAGTCCTCCTTCCGACTTGACTTGGACAGG
AAAAAATCAAGCACACACCGTCTCTTCGTAATAATCCCCACACAAAATTG
TCAATTGTTCAATCCACTCCTCATTTTCTCACCCATCTATTCTTAGGTAC
CTGCACAGGCATCATTGAACCCCTCCAGTCCCTTCTCCTCTTCGGCCGAT
GGCTATGTCAACCACCGCGTGGTTATCAATGACCCCGTTGCGTTTCAGGT
TAAGAAGGAGAAGCTTACAATGGACGGCCCTAGCAAACTTCAGGTAGGCT
GCAAGAGCGAGCGGCAGCCGACGCTGCTGTCCCTTCATCTAATGTGCTTC
ATTATGCCCCCCCTCATCTCCTCGTCCGCGTTACATTTAAATGCTACGAA
TGACATTGTTGAAATCGTCTCTTCCACATGTTTATACCCTTTCAGCTTCC
TTTCCCCACCCACTTCCCATCCATACTCCGTCCTTCCCCTTCCTCTCTTC
CCCATAGCTACTCTTTGACTGGGACTTTACGATGACACACTTTTTCTTGG
ATGGACGCCGGGCCTGCAGCTGCCACAAAGCAATTGAGGACTGCGACTTG
CTTCCCGCATCCTACCACGAGTAAGTTAAGTCAAATTGTCGACAGGAGGC
ACCCATGCCAACCTCTCCATTTCTTTCCACACACCCTTCCTGCCCTCCTT
CTTCGACAGCAAAGCTCAAGCCCTCCAGACCTTCTACTACGCCAAGGAGG
TCGACCCTTCACTCACACTTGGCCAAAAAATCCCTTTCATGGAAGACTGG
GTCCGGGAGGCCCACGAGCTATTGATCGAGTACAATTTTCGTCGGTCTCT
CCTCCCCACTGCTGTCCGAAACGCCCACCTCGCCGTGAGGGAGGGATGCC
AAGAAATCATGGATGTCAGTGCACGGGCCGCGGTGCCTCTATTGATATTT
TCGGCAGGGATCGCTGATGTGTTGGAGGAGGTGTGTCGGCAGCAGTTGTC
CAAGCCCTTGCCGGACACGGTGCATGTCGTGTCGAATCGGATGCTGTTTT
CTTCTATTTCCTCGTCCAACACAAAAGAAAGAAACCAAGGGGAAGAAAAA
GATAAAGAGGTGTTGGTCGGCTTTACTGAGCCCGTCTTTCACGTATTTAA
CAAGCGAGCGGCGAGCGTGCTAGACTCCTCCTCTTACTTTCACCAAACTG
ATTACGAACAACGAAGGAATGTGTTGCTGGTGGGGGACAGCCTGGGAGAC
CTGCACATGAGTGATGGGCTGGACGCGAAGGAGATTTTGAGGATTGGGTT
CTTGAATGATCGGTAAGTATAAAGATGATGGATGTTGTTTTCATTTCCTT
TTCTCCCTCCTTCCTGTCGTCATTTTTTCTCACCACTACTCTCATATTTA
CTCAACAAAATACAGGGTGGAAGAGCGGTTGGACGAATACAGCCAAAGGT
TCGACGTAGTACTACTTGGTGACGGGGATTTAAGCTATGTGATTGCATTG
CTAAACGAACTTGTAGGAGAGGGCGAGGGTGGTGCCGGCGGAGGGAATGG
TGCATCTTGAGATATAATGATGGTGACAGGATGACTGATGGACATAGCCT
GTATTGAATCGTGAACTATAGATTTTCAATACGTGATACAAGCAAATTGT
GACAGCTCACTCCTGTCCTGCTTTCATGTTTTTTTTTGGGGGGGGTTACT
TCGCCCTCTTCACTTCGGTGAAATCATGTCGCTCAGTCACCCGGATACTG
CCCATCCCATCTGCGAACCACCGTGCCATGCTGT

Coding sequence (CDS) from alignment at scaffold_8:707002..708885+

>mRNA_4043 ID=mRNA_4043|Name=jgi.p|Nanoce1779_2|422968|organism=Nannochloropsis oceanica|type=CDS|length=2511bp|location=Sequence derived from alignment at scaffold_8:707002..708885+ (Nannochloropsis oceanica)
ATGACACACTTTTTCTTGGATGGACGCCGGGCCTGCAGCTGCCACAAAGC
AATTGAGGACTGCGACTTGCTTCCCGCATCCTACCACGACAAAGCTCAAG
CCCTCCAGACCTTCTACTACGCCAAGGAGGTCGACCCTTCACTCACACTT
GGCCAAAAAATCCCTTTCATGGAAGACTGGGTCCGGGAGGCCCACGAGCT
ATTGATCGAGTACAATTTTCGTCGGTCTCTCCTCCCCACTGCTGTCCGAA
ACGCCCACCTCGCCGTGAGGGAGGGATGCCAAGAAATCATGGATGTCAGT
GCACGGGCCGCGGTGCCTCTATTGATATTTTCGGCAGGGATCGCTGATGT
GTTGGAGGAGGTGTGTCGGCAGCAGTTGTCCAAGCCCTTGCCGGACACGG
TGCATGTCGTGTCGAATCGGATGCTGTTTTCTTCTATTTCCTCGTCCAAC
ACAAAAGAAAGAAACCAAGGGGAAGAAAAAGATAAAGAGGTGTTGGTCGG
CTTTACTGAGCCCGTCTTTCACGTATTTAACAAGCGAGCGGCGAGCGTGC
TAGACTCCTCCTCTTACTTTCACCAAACTGATTACGAACAACGAAGGAAT
GTGTTGCTGGTGGGGGACAGCCTGGGAGACCTGCACATGAGTGATGGGCT
GGACGCGAAGGAGATTTTGAGGATTGGGTTCTTGAATGATCGGGTGGAAG
AGCGGTTGGACGAATACAGCCAAAGGTTCGACGTAGTACTACTTGGTGAC
GGGGATTTAAGCTATGTGATTGCATTGCTAAACGAACTTGTAGGAGAGGG
CGAGGGTGGTGCCGGCGGAGGGAATGGTGCATCTTGAATGACACACTTTT
TCTTGGATGGACGCCGGGCCTGCAGCTGCCACAAAGCAATTGAGGACTGC
GACTTGCTTCCCGCATCCTACCACGACAAAGCTCAAGCCCTCCAGACCTT
CTACTACGCCAAGGAGGTCGACCCTTCACTCACACTTGGCCAAAAAATCC
CTTTCATGGAAGACTGGGTCCGGGAGGCCCACGAGCTATTGATCGAGTAC
AATTTTCGTCGGTCTCTCCTCCCCACTGCTGTCCGAAACGCCCACCTCGC
CGTGAGGGAGGGATGCCAAGAAATCATGGATGTCAGTGCACGGGCCGCGG
TGCCTCTATTGATATTTTCGGCAGGGATCGCTGATGTGTTGGAGGAGGTG
TGTCGGCAGCAGTTGTCCAAGCCCTTGCCGGACACGGTGCATGTCGTGTC
GAATCGGATGCTGTTTTCTTCTATTTCCTCGTCCAACACAAAAGAAAGAA
ACCAAGGGGAAGAAAAAGATAAAGAGGTGTTGGTCGGCTTTACTGAGCCC
GTCTTTCACGTATTTAACAAGCGAGCGGCGAGCGTGCTAGACTCCTCCTC
TTACTTTCACCAAACTGATTACGAACAACGAAGGAATGTGTTGCTGGTGG
GGGACAGCCTGGGAGACCTGCACATGAGTGATGGGCTGGACGCGAAGGAG
ATTTTGAGGATTGGGTTCTTGAATGATCGGGTGGAAGAGCGGTTGGACGA
ATACAGCCAAAGGTTCGACGTAGTACTACTTGGTGACGGGGATTTAAGCT
ATGTGATTGCATTGCTAAACGAACTTGTAGGAGAGGGCGAGGGTGGTGCC
GGCGGAGGGAATGGTGCATCTTGAATGACACACTTTTTCTTGGATGGACG
CCGGGCCTGCAGCTGCCACAAAGCAATTGAGGACTGCGACTTGCTTCCCG
CATCCTACCACGACAAAGCTCAAGCCCTCCAGACCTTCTACTACGCCAAG
GAGGTCGACCCTTCACTCACACTTGGCCAAAAAATCCCTTTCATGGAAGA
CTGGGTCCGGGAGGCCCACGAGCTATTGATCGAGTACAATTTTCGTCGGT
CTCTCCTCCCCACTGCTGTCCGAAACGCCCACCTCGCCGTGAGGGAGGGA
TGCCAAGAAATCATGGATGTCAGTGCACGGGCCGCGGTGCCTCTATTGAT
ATTTTCGGCAGGGATCGCTGATGTGTTGGAGGAGGTGTGTCGGCAGCAGT
TGTCCAAGCCCTTGCCGGACACGGTGCATGTCGTGTCGAATCGGATGCTG
TTTTCTTCTATTTCCTCGTCCAACACAAAAGAAAGAAACCAAGGGGAAGA
AAAAGATAAAGAGGTGTTGGTCGGCTTTACTGAGCCCGTCTTTCACGTAT
TTAACAAGCGAGCGGCGAGCGTGCTAGACTCCTCCTCTTACTTTCACCAA
ACTGATTACGAACAACGAAGGAATGTGTTGCTGGTGGGGGACAGCCTGGG
AGACCTGCACATGAGTGATGGGCTGGACGCGAAGGAGATTTTGAGGATTG
GGTTCTTGAATGATCGGGTGGAAGAGCGGTTGGACGAATACAGCCAAAGG
TTCGACGTAGTACTACTTGGTGACGGGGATTTAAGCTATGTGATTGCATT
GCTAAACGAACTTGTAGGAGAGGGCGAGGGTGGTGCCGGCGGAGGGAATG
GTGCATCTTGA

Synonyms

Publications