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Properties
| Property Name | Value |
|---|
| TranscriptId | 586361 |
| Track | FilteredModels2 |
| ProteinId | 586275 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:704859..706886 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4041 ID=mRNA_4041|Name=jgi.p|Nanoce1779_2|586275|organism=Nannochloropsis oceanica|type=mRNA|length=1508bp
AGTCTAGACGCCCTCAATTTACCCACGCAGACAGCATCAATGTAAAAGTC
ACTGTCCGCTCCGATAATATTACAATGAAAGTCCTTGGTCTCTTCGTCGC
CGCCGCGGTGGGTCTGCTGGCCTGGTCAGACGCCGCTCTCGTCCGTGGAA
GCAGCAAGGGCAAGCCTTATCAAGTGAACTCGAGCTCCCGCCTCTCGCTT
GACCTGGAGCCCCAACACAATTATACCTTTGACCGCTACGTCGAAGAGTT
TGGCAAAGAATACATTCCTGGTTCGGAGGAATGGGAAAAGCGCAGGAACC
TTTTCCTCAAGCGCAAGAAATCCATTCAGGCTCATAATGCTGCGCATCTC
AATGGCAAGACGACCTTTCGAAAGGGTGTGAACGAGTACGCCGATTGGAC
AGAGGCCGAGCTTCGGGGTATGCTGGGTTTCAAGCCCTCTGAGGAATGGC
ATCGCAAGCATCATTCTGGCTCGGAGGTATTGTTAACTCTGATAGAGGGA
GCGGGGAATGAGTCCGAGTTGTCGGGGTTGCGCCAACAGGAGCGACTCTT
GACCAACCTCCCCACCCATGTGGACTGGCGCGAGAAAGGCGCGGTGACTA
AGCCCAAGAACCAGGGGGCGTGTGGGTCCTGCTGGACCTTTTCGGGGGTC
CAGGCCATCGAAAGTGCTCTCTGGCTAAGCACCGGCAAGCTCTTCACATT
GTCCGAGCAAGAATTTGTTTCCTGTACTCCCAACCCTGACCACTGCGGGG
GCACCGGCGGGTGCTATGGTGCCACGCAAGATATTCTGTATGACTACGTG
CTGGCCCAAGGGTTCTCTCTGGAGCAAGATTATCCTTACGTAAGCGGGAA
TGGCACCGAGCCGATGTGCTTGAGGCAGCCTTTGCACGTCGGCAGCATTG
CGGGATACGTGGACGTGACACCTAATGATTTGGGGGCACATATGCTGGCA
GTGAATAGCCAGCCATTGGCCATTTCTCTGGATGCATCAGAGTTTCATAA
CTACCACTCGGGAGTGTTGACGTTTGAGGACTGCGGCGCTGACCTGAACC
ACGCCGTCCAGCTGGTAGGCTACGGCACAGACGACGAGACTGGACTCGAT
TATTTTCTCGTGCGCAACAGCTGGGGAAGGGCATGGGGAGAGGACGGGTA
CATCCGGTTGGCACGCTCGGACAGATGTGCGGTGGATCAAACCCCTTTGG
ATGGGACGGGCTGCGAGGGTGGACCGGAGAAGCTGACGGTATGTGGCACG
TGTGGCATGCTGTTTAGCTCGTCTTACCCTGTTGGGGCCTTCTTGTTTGA
AGATTAATATGTGGGTGGGGGAGAAGGGGAGGAGACGTGGGAGGCGGCAG
CAGCAGCAACAGTACAGCAGCAACAGACGCAGCCGCTGCGTCGCTCAAGT
GTGTCGATACCAGAGAAATATCATTACATGAGCCTCTTACATACCACAAG
TGTAGAAAAAAAGGGAGAGACTGAGGAGGTGGTGAAAGTGCCGATCTAGG
AGGGGGGA back to topprotein sequence of jgi.p|Nanoce1779_2|586275 >mRNA_4041-protein ID=mRNA_4041-protein|Name=jgi.p|Nanoce1779_2|586275|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MKVLGLFVAAAVGLLAWSDAALVRGSSKGKPYQVNSSSRLSLDLEPQHNY
TFDRYVEEFGKEYIPGSEEWEKRRNLFLKRKKSIQAHNAAHLNGKTTFRK
GVNEYADWTEAELRGMLGFKPSEEWHRKHHSGSEVLLTLIEGAGNESELS
GLRQQERLLTNLPTHVDWREKGAVTKPKNQGACGSCWTFSGVQAIESALW
LSTGKLFTLSEQEFVSCTPNPDHCGGTGGCYGATQDILYDYVLAQGFSLE
QDYPYVSGNGTEPMCLRQPLHVGSIAGYVDVTPNDLGAHMLAVNSQPLAI
SLDASEFHNYHSGVLTFEDCGADLNHAVQLVGYGTDDETGLDYFLVRNSW
GRAWGEDGYIRLARSDRCAVDQTPLDGTGCEGGPEKLTVCGTCGMLFSSS
YPVGAFLFED* back to topmRNA from alignment at scaffold_8:704859..706886- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4041 ID=mRNA_4041|Name=jgi.p|Nanoce1779_2|586275|organism=Nannochloropsis oceanica|type=mRNA|length=2028bp|location=Sequence derived from alignment at scaffold_8:704859..706886- (Nannochloropsis oceanica)
AGTCTAGACGCCCTCAATTTACCCACGCAGACAGCATCAATGTAAAAGGT
GATATTTACTGCAAGCCCCTATCTCATGCTTTTCGGTGCCATCTCGCGAC
CCAAGCCTTTTCCCGCCTGCTGTGCCTTTTTGTTCCTTGACGCTGACCAA
CTGACTCGAACACAACCTACATTTACCAACAGTCACTGTCCGCTCCGATA
ATATTACAATGAAAGTCCTTGGTCTCTTCGTCGCCGCCGCGGTGGGTCTG
CTGGCCTGGTCAGACGCCGCTCTCGTCCGTGGAAGCAGCAAGGGCAAGCC
TTATCAAGTGAACTCGAGCTCCCGCCTCTCGCTTGACCTGGAGCCCCAAC
ACAATTATACCTTTGACCGCTACGTCGAAGAGTTTGGCAAAGAATACATT
CCTGGTTCGGAGGAATGGGAAAAGCGCAGGAACCTTTTCCTCAAGCGCAA
GAAATCCATTCAGGCTCATAATGCTGCGCATCTCAATGGCAAGACGACCT
TTCGAAAGGGTGTGAACGAGTACGCCGATTGGACAGAGGCCGAGCTTCGG
GGTATGCTGGGTTTCAAGCCCTCTGAGGAATGGCATCGCAAGCATCATTC
TGGCTCGGAGGTATTGTTAACTCTGATAGAGGGAGCGGGGAATGAGTCCG
AGTTGTCGGGGTTGCGCCAACAGGAGCGACTCTTGACCAACCTCCCCACC
CATGTGGACTGGCGCGAGAAAGGCGCGGTGACTAAGCCCAAGAACCAGGG
GGCGTGTGGGTCGTAAGTATAGTCGGGGGGGGGGAAGAGGGTCGGGGGGC
CGTGTCTTGATGCTTCATGGACGCCGTGTGCCCCCCTTACTTGAAAAGTG
TTTTTTGTAAGAGCGACTCATCTGTCTCTGTCTTCCTTCCTCTTTCCCTC
TTTCCGCTACAGCTGCTGGACCTTTTCGGGGGTCCAGGCCATCGAAAGTG
CTCTCTGGCTAAGCACCGGCAAGCTCTTCACATTGTCCGAGCAAGAATTT
GTTTCCTGTACTCCCAACCCTGACCACTGCGGGGGCACCGGCGGGTGCTA
TGGTGCCACGCAAGATATTCTGTATGACTACGTGCTGGCCCAAGGGTTCT
CTCTGGAGCAAGATTATCCTTACGTAAGCGGGAATGGCACCGAGCCGATG
TGCTTGAGGCAGCCTTTGCACGTCGGCAGCATTGCGGGATACGTGGACGT
GACACCTAATGATTTGGGGGCACATATGCTGGCAGTGAATAGCCAGCCAT
TGGCCATTTCTCTGGATGCATCAGAGTTTCATAACTACCACTCGGGAGTG
TTGACGTTTGAGGTAGAGAGGGAGTGAGGAAGGAGGGAGGGAGTGGGGGG
TAAGGGAGGGAGGGGAGGAAAAGGAGGTATGTGGGAACATCAAGACAAGC
ACACTTCATGGTAACTTCGACACACTTCATGTACCTTCTACATTCGGACA
TGACATTTTTGTAGCGATAGACATGTCTCAGCACTCGACAAGGTCGCTTA
TCCCTCTGTCTCCTTCCCTTCTTTCCTCCCTCCTCGACTCCAAAACAGGA
CTGCGGCGCTGACCTGAACCACGCCGTCCAGCTGGTAGGCTACGGCACAG
ACGACGAGACTGGACTCGATTATTTTCTCGTGCGCAACAGCTGGGGAAGG
GCATGGGGAGAGGACGGGTACATCCGGTTGGCACGCTCGGACAGATGTGC
GGTGGATCAAACCCCTTTGGATGGGACGGGCTGCGAGGGTGGACCGGAGA
AGCTGACGGTATGTGGCACGTGTGGCATGCTGTTTAGCTCGTCTTACCCT
GTTGGGGCCTTCTTGTTTGAAGATTAATATGTGGGTGGGGGAGAAGGGGA
GGAGACGTGGGAGGCGGCAGCAGCAGCAACAGTACAGCAGCAACAGACGC
AGCCGCTGCGTCGCTCAAGTGTGTCGATACCAGAGAAATATCATTACATG
AGCCTCTTACATACCACAAGTGTAGAAAAAAAGGGAGAGACTGAGGAGGT
GGTGAAAGTGCCGATCTAGGAGGGGGGA back to topCoding sequence (CDS) from alignment at scaffold_8:704859..706886- >mRNA_4041 ID=mRNA_4041|Name=jgi.p|Nanoce1779_2|586275|organism=Nannochloropsis oceanica|type=CDS|length=3699bp|location=Sequence derived from alignment at scaffold_8:704859..706886- (Nannochloropsis oceanica)
GACTGCGGCGCTGACCTGAACCACGCCGTCCAGCTGGTAGGCTACGGCAC
AGACGACGAGACTGGACTCGATTATTTTCTCGTGCGCAACAGCTGGGGAA
GGGCATGGGGAGAGGACGGGTACATCCGGTTGGCACGCTCGGACAGATGT
GCGGTGGATCAAACCCCTTTGGATGGGACGGGCTGCGAGGGTGGACCGGA
GAAGCTGACGGTATGTGGCACGTGTGGCATGCTGTTTAGCTCGTCTTACC
CTGTTGGGGCCTTCTTGTTTGAAGATTAACTGCTGGACCTTTTCGGGGGT
CCAGGCCATCGAAAGTGCTCTCTGGCTAAGCACCGGCAAGCTCTTCACAT
TGTCCGAGCAAGAATTTGTTTCCTGTACTCCCAACCCTGACCACTGCGGG
GGCACCGGCGGGTGCTATGGTGCCACGCAAGATATTCTGTATGACTACGT
GCTGGCCCAAGGGTTCTCTCTGGAGCAAGATTATCCTTACGTAAGCGGGA
ATGGCACCGAGCCGATGTGCTTGAGGCAGCCTTTGCACGTCGGCAGCATT
GCGGGATACGTGGACGTGACACCTAATGATTTGGGGGCACATATGCTGGC
AGTGAATAGCCAGCCATTGGCCATTTCTCTGGATGCATCAGAGTTTCATA
ACTACCACTCGGGAGTGTTGACGTTTGAGATGAAAGTCCTTGGTCTCTTC
GTCGCCGCCGCGGTGGGTCTGCTGGCCTGGTCAGACGCCGCTCTCGTCCG
TGGAAGCAGCAAGGGCAAGCCTTATCAAGTGAACTCGAGCTCCCGCCTCT
CGCTTGACCTGGAGCCCCAACACAATTATACCTTTGACCGCTACGTCGAA
GAGTTTGGCAAAGAATACATTCCTGGTTCGGAGGAATGGGAAAAGCGCAG
GAACCTTTTCCTCAAGCGCAAGAAATCCATTCAGGCTCATAATGCTGCGC
ATCTCAATGGCAAGACGACCTTTCGAAAGGGTGTGAACGAGTACGCCGAT
TGGACAGAGGCCGAGCTTCGGGGTATGCTGGGTTTCAAGCCCTCTGAGGA
ATGGCATCGCAAGCATCATTCTGGCTCGGAGGTATTGTTAACTCTGATAG
AGGGAGCGGGGAATGAGTCCGAGTTGTCGGGGTTGCGCCAACAGGAGCGA
CTCTTGACCAACCTCCCCACCCATGTGGACTGGCGCGAGAAAGGCGCGGT
GACTAAGCCCAAGAACCAGGGGGCGTGTGGGTCGACTGCGGCGCTGACCT
GAACCACGCCGTCCAGCTGGTAGGCTACGGCACAGACGACGAGACTGGAC
TCGATTATTTTCTCGTGCGCAACAGCTGGGGAAGGGCATGGGGAGAGGAC
GGGTACATCCGGTTGGCACGCTCGGACAGATGTGCGGTGGATCAAACCCC
TTTGGATGGGACGGGCTGCGAGGGTGGACCGGAGAAGCTGACGGTATGTG
GCACGTGTGGCATGCTGTTTAGCTCGTCTTACCCTGTTGGGGCCTTCTTG
TTTGAAGATTAACTGCTGGACCTTTTCGGGGGTCCAGGCCATCGAAAGTG
CTCTCTGGCTAAGCACCGGCAAGCTCTTCACATTGTCCGAGCAAGAATTT
GTTTCCTGTACTCCCAACCCTGACCACTGCGGGGGCACCGGCGGGTGCTA
TGGTGCCACGCAAGATATTCTGTATGACTACGTGCTGGCCCAAGGGTTCT
CTCTGGAGCAAGATTATCCTTACGTAAGCGGGAATGGCACCGAGCCGATG
TGCTTGAGGCAGCCTTTGCACGTCGGCAGCATTGCGGGATACGTGGACGT
GACACCTAATGATTTGGGGGCACATATGCTGGCAGTGAATAGCCAGCCAT
TGGCCATTTCTCTGGATGCATCAGAGTTTCATAACTACCACTCGGGAGTG
TTGACGTTTGAGATGAAAGTCCTTGGTCTCTTCGTCGCCGCCGCGGTGGG
TCTGCTGGCCTGGTCAGACGCCGCTCTCGTCCGTGGAAGCAGCAAGGGCA
AGCCTTATCAAGTGAACTCGAGCTCCCGCCTCTCGCTTGACCTGGAGCCC
CAACACAATTATACCTTTGACCGCTACGTCGAAGAGTTTGGCAAAGAATA
CATTCCTGGTTCGGAGGAATGGGAAAAGCGCAGGAACCTTTTCCTCAAGC
GCAAGAAATCCATTCAGGCTCATAATGCTGCGCATCTCAATGGCAAGACG
ACCTTTCGAAAGGGTGTGAACGAGTACGCCGATTGGACAGAGGCCGAGCT
TCGGGGTATGCTGGGTTTCAAGCCCTCTGAGGAATGGCATCGCAAGCATC
ATTCTGGCTCGGAGGTATTGTTAACTCTGATAGAGGGAGCGGGGAATGAG
TCCGAGTTGTCGGGGTTGCGCCAACAGGAGCGACTCTTGACCAACCTCCC
CACCCATGTGGACTGGCGCGAGAAAGGCGCGGTGACTAAGCCCAAGAACC
AGGGGGCGTGTGGGTCGACTGCGGCGCTGACCTGAACCACGCCGTCCAGC
TGGTAGGCTACGGCACAGACGACGAGACTGGACTCGATTATTTTCTCGTG
CGCAACAGCTGGGGAAGGGCATGGGGAGAGGACGGGTACATCCGGTTGGC
ACGCTCGGACAGATGTGCGGTGGATCAAACCCCTTTGGATGGGACGGGCT
GCGAGGGTGGACCGGAGAAGCTGACGGTATGTGGCACGTGTGGCATGCTG
TTTAGCTCGTCTTACCCTGTTGGGGCCTTCTTGTTTGAAGATTAACTGCT
GGACCTTTTCGGGGGTCCAGGCCATCGAAAGTGCTCTCTGGCTAAGCACC
GGCAAGCTCTTCACATTGTCCGAGCAAGAATTTGTTTCCTGTACTCCCAA
CCCTGACCACTGCGGGGGCACCGGCGGGTGCTATGGTGCCACGCAAGATA
TTCTGTATGACTACGTGCTGGCCCAAGGGTTCTCTCTGGAGCAAGATTAT
CCTTACGTAAGCGGGAATGGCACCGAGCCGATGTGCTTGAGGCAGCCTTT
GCACGTCGGCAGCATTGCGGGATACGTGGACGTGACACCTAATGATTTGG
GGGCACATATGCTGGCAGTGAATAGCCAGCCATTGGCCATTTCTCTGGAT
GCATCAGAGTTTCATAACTACCACTCGGGAGTGTTGACGTTTGAGATGAA
AGTCCTTGGTCTCTTCGTCGCCGCCGCGGTGGGTCTGCTGGCCTGGTCAG
ACGCCGCTCTCGTCCGTGGAAGCAGCAAGGGCAAGCCTTATCAAGTGAAC
TCGAGCTCCCGCCTCTCGCTTGACCTGGAGCCCCAACACAATTATACCTT
TGACCGCTACGTCGAAGAGTTTGGCAAAGAATACATTCCTGGTTCGGAGG
AATGGGAAAAGCGCAGGAACCTTTTCCTCAAGCGCAAGAAATCCATTCAG
GCTCATAATGCTGCGCATCTCAATGGCAAGACGACCTTTCGAAAGGGTGT
GAACGAGTACGCCGATTGGACAGAGGCCGAGCTTCGGGGTATGCTGGGTT
TCAAGCCCTCTGAGGAATGGCATCGCAAGCATCATTCTGGCTCGGAGGTA
TTGTTAACTCTGATAGAGGGAGCGGGGAATGAGTCCGAGTTGTCGGGGTT
GCGCCAACAGGAGCGACTCTTGACCAACCTCCCCACCCATGTGGACTGGC
GCGAGAAAGGCGCGGTGACTAAGCCCAAGAACCAGGGGGCGTGTGGGTC back to top
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