jgi.p|Nanoce1779_2|586269, mRNA_4040 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586269
Unique Name	mRNA_4040
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1462
Alignment location	scaffold_8:702856..704883 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586355
Track	FilteredModels2
ProteinId	586269

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:702856..704883 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586269	gene_4040	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586269	mRNA_4040-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4040	CDS_4040	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:702856..704883+
coding sequence from alignment at scaffold_8:702856..704883+

mRNA sequence

>mRNA_4040 ID=mRNA_4040|Name=jgi.p|Nanoce1779_2|586269|organism=Nannochloropsis oceanica|type=mRNA|length=1462bp
CAGCACCATGTCCAGCCCCCAAGCCCAGATCAACCAAGCCTTTGGCACAA
AGAAGACACTCTACGAGATCCTCGGCGTGCCTGCGGATGCTACGGTTGCT
GTTATTAGGAAGGCCTACTTTAAGATGGCCTTGACTTGTCATCCGGACAA
GTGCCCGGACGACCCCGGGGCCAATGCTCGCTTTCAAGCCCTCTCAATTA
TCCACGCCACCCTCAGCGACGACGACAAGCGTCGGAGCTACGACGAGACG
GGAGAAGTTGAATCGGAAGACGTTGAACTGAAACAAAGCGAGCAGGAATG
GTATGAGTACTGGCGGGAGCTTTTCCCCACGGTGACGGTAGACAAGATCA
AAAAGTTTCAAGGGGAGTATCAAGGGAGCGAGGAAGAAAAGGGAGACGTG
CTGAAGGCCTACAAGGAGGGCCAAGGAAAGATGAGTTGGGTGATTGATAA
TGTGATGCTGGCGACGGATCAGGACGAGGAACGCTTTCGGGAGATGATTG
AGGGTGCCATCGCGGCCAAGGAAGTGAAGCGACTCAAGGGCTTCAAGGCG
GACGTCCTGAAGGACGCCAAGCGGAAGAAGCGGGCAGAAAAGGAGGCCAA
AGAAGCCGAAGAGCTGCTGCGTGCCATCCACGCAAAGCGGGGTGTGAACG
CCCTTGCCACAATGGCTACAGACAGGAGGAATCAAATGTCCAGTTTTTAC
GATTCTCTGGAGGAAAAGTACGGAAAGAAGGGCGGCAATGGTGGCGGAGA
TGGAGAGAATGGTAGGGCGCGGATTGGGAAGAAGAGGAAGGCGAAGAAGG
AAGAAGAGGAGGGGGGGGAAGAGAAGGACATTGACGATGAGGAGTTTGAA
CGGATTCGAGCTTCGTTGGGGAGGAATGAGAAAGTGGCCGCAGCGGGGAG
AAGGAGTGATAAGATGAGCGAATGAAATACTGCATGAAACGGGAGATGGA
AAGGGAGAGGGACGGGTGCAAAGGGTAAGGCCGGCGTGTGCAATGCATGC
CCCGTGGACATACCACACCGTAAGATAATCAGAAGAACAAGGAACATATA
TCTCCGGGCTCTGAATGTTGTGTTGTGTTGTTGTGTGTTGGCAATAACGA
ACAAAGAGGAAGTAGAGAAAGAATGGCAATGCCTTAATGCAAACAAACAG
CCCATGGAACCGTACATAACTTCAAGCCATAAATATCGTTTTCTTCCCTG
GGCACATAAAATAGCCATGCCAAAGCTCACAGTAGAGCTACAAAAGAATA
GCAAAAACAAGATGAAAAGTGCAACCCAGCATTATAAGGATCGTCAGTGA
CTCTCTATGACCATTATATATATATCTTTAAATTTATTTTTTTACAGTCC
CTTCTTCCACTCTTTATTATTCTTTCCTCTCTCCAACTTAAGCTACCTCA
ACCTTCAATACACACACCCCTTTGAGTTCGCTATCTTTCCCCCCTCCTAG
ATCGGCACTTTC

protein sequence of jgi.p|Nanoce1779_2|586269

>mRNA_4040-protein ID=mRNA_4040-protein|Name=jgi.p|Nanoce1779_2|586269|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MSSPQAQINQAFGTKKTLYEILGVPADATVAVIRKAYFKMALTCHPDKCP
DDPGANARFQALSIIHATLSDDDKRRSYDETGEVESEDVELKQSEQEWYE
YWRELFPTVTVDKIKKFQGEYQGSEEEKGDVLKAYKEGQGKMSWVIDNVM
LATDQDEERFREMIEGAIAAKEVKRLKGFKADVLKDAKRKKRAEKEAKEA
EELLRAIHAKRGVNALATMATDRRNQMSSFYDSLEEKYGKKGGNGGGDGE
NGRARIGKKRKAKKEEEEGGEEKDIDDEEFERIRASLGRNEKVAAAGRRS
DKMSE*

mRNA from alignment at scaffold_8:702856..704883+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4040 ID=mRNA_4040|Name=jgi.p|Nanoce1779_2|586269|organism=Nannochloropsis oceanica|type=mRNA|length=2028bp|location=Sequence derived from alignment at scaffold_8:702856..704883+ (Nannochloropsis oceanica)
CAGCACCATGTCCAGCCCCCAAGCCCAGATCAACCAAGCCTTTGGCACAA
AGAAGACACTCTACGAGATCCTCGGCGTGCCTGCGGATGCTACGGTTGCT
GTTATTAGGAAGGCCTACTTTAAGATGGCCTTGACTTGTGTGAGTATGGG
GGAATGAGCTTGGAGCGAAGGAGGGAGTGGGTGTAAAAATGGTGTAGCGT
GCCTTGCCTCCGTCTCGTAAAATTGCTCTTTGGCGAAAAGGTTGTTCCCA
CTGATTGCGTGCAAGTGACAGAGGAGAAGATGGTTGCCGCTCTGGTATCA
AATGATCGCCTCGCTCCACTGCTCCCCGTGCTTTCTGATTTTGCCGAAGC
GGGACGAACACTATTATTTTCGTTTAAAAACAAACCCATAATATTTTGCC
TGCCTTTTTCTCTTCCGCCGATAGTTCAATGTCATATGTCACACTTATCC
CCCCCCTCCTTTGCCAAACACACAGCATCCGGACAAGTGCCCGGACGACC
CCGGGGCCAATGCTCGCTTTCAAGCCCTCTCAATTATCCACGCCACCCTC
AGCGACGACGACAAGCGTCGGAGCTACGACGAGACGGGAGAAGTTGAATC
GGAAGACGTTGAACTGAAACAAAGCGAGCAGGAATGGTATGAGTACTGGC
GGGAGCTTTTCCCCACGGTGACGGTAGACAAGATCAAAAAGTTTCAAGGG
GAGTATCAAGGGAGCGAGGAAGAAAAGGGAGACGTGCTGAAGGCCTACAA
GGAGGGCCAAGGAAAGATGAGTTGGGTGATTGATAATGTGATGCTGGCGA
CGGATCAGGACGAGGAACGCTTTCGGGAGATGATTGAGGGTGCCATCGCG
GCCAAGGAAGTGAAGCGACTCAAGGGCTTCAAGGCGGACGTCCTGAAGGA
CGCCAAGCGGAAGAAGCGGGCAGAAAAGGTCAGAATAGACGGTGGGAGAG
GTGTTGGGATATAAAGTCGCAAGTATATGCTTTGGTCACCACAAGTCAAG
AGAGCTGCGTCATTAGGGGCGCAATGACGAACCTCTTGTGACCTCTGTTC
TTGCTGGATCGCCTCTCGCGGCTGAAGGCTGATGCCCCGAAAGTGTTGTC
CTCTCAACATCTCTCCGTCACCCCCTCTCTCCTTTTCTTTCTTCCCTTTG
ATCCGCAGGAGGCCAAAGAAGCCGAAGAGCTGCTGCGTGCCATCCACGCA
AAGCGGGGTGTGAACGCCCTTGCCACAATGGCTACAGACAGGAGGAATCA
AATGTCCAGTTTTTACGATTCTCTGGAGGAAAAGTACGGAAAGAAGGGCG
GCAATGGTGGCGGAGATGGAGAGAATGGTAGGGCGCGGATTGGGAAGAAG
AGGAAGGCGAAGAAGGAAGAAGAGGAGGGGGGGGAAGAGAAGGACATTGA
CGATGAGGAGTTTGAACGGATTCGAGCTTCGTTGGGGAGGAATGAGAAAG
TGGCCGCAGCGGGGAGAAGGAGTGATAAGATGAGCGAATGAAATACTGCA
TGAAACGGGAGATGGAAAGGGAGAGGGACGGGTGCAAAGGGTAAGGCCGG
CGTGTGCAATGCATGCCCCGTGGACATACCACACCGTAAGATAATCAGAA
GAACAAGGAACATATATCTCCGGGCTCTGAATGTTGTGTTGTGTTGTTGT
GTGTTGGCAATAACGAACAAAGAGGAAGTAGAGAAAGAATGGCAATGCCT
TAATGCAAACAAACAGCCCATGGAACCGTACATAACTTCAAGCCATAAAT
ATCGTTTTCTTCCCTGGGCACATAAAATAGCCATGCCAAAGCTCACAGTA
GAGCTACAAAAGAATAGCAAAAACAAGATGAAAAGTGCAACCCAGCATTA
TAAGGATCGTCAGTGACTCTCTATGACCATTATATATATATCTTTAAATT
TATTTTTTTACAGTCCCTTCTTCCACTCTTTATTATTCTTTCCTCTCTCC
AACTTAAGCTACCTCAACCTTCAATACACACACCCCTTTGAGTTCGCTAT
CTTTCCCCCCTCCTAGATCGGCACTTTC

Coding sequence (CDS) from alignment at scaffold_8:702856..704883+

>mRNA_4040 ID=mRNA_4040|Name=jgi.p|Nanoce1779_2|586269|organism=Nannochloropsis oceanica|type=CDS|length=2754bp|location=Sequence derived from alignment at scaffold_8:702856..704883+ (Nannochloropsis oceanica)
ATGTCCAGCCCCCAAGCCCAGATCAACCAAGCCTTTGGCACAAAGAAGAC
ACTCTACGAGATCCTCGGCGTGCCTGCGGATGCTACGGTTGCTGTTATTA
GGAAGGCCTACTTTAAGATGGCCTTGACTTGTCATCCGGACAAGTGCCCG
GACGACCCCGGGGCCAATGCTCGCTTTCAAGCCCTCTCAATTATCCACGC
CACCCTCAGCGACGACGACAAGCGTCGGAGCTACGACGAGACGGGAGAAG
TTGAATCGGAAGACGTTGAACTGAAACAAAGCGAGCAGGAATGGTATGAG
TACTGGCGGGAGCTTTTCCCCACGGTGACGGTAGACAAGATCAAAAAGTT
TCAAGGGGAGTATCAAGGGAGCGAGGAAGAAAAGGGAGACGTGCTGAAGG
CCTACAAGGAGGGCCAAGGAAAGATGAGTTGGGTGATTGATAATGTGATG
CTGGCGACGGATCAGGACGAGGAACGCTTTCGGGAGATGATTGAGGGTGC
CATCGCGGCCAAGGAAGTGAAGCGACTCAAGGGCTTCAAGGCGGACGTCC
TGAAGGACGCCAAGCGGAAGAAGCGGGCAGAAAAGGAGGCCAAAGAAGCC
GAAGAGCTGCTGCGTGCCATCCACGCAAAGCGGGGTGTGAACGCCCTTGC
CACAATGGCTACAGACAGGAGGAATCAAATGTCCAGTTTTTACGATTCTC
TGGAGGAAAAGTACGGAAAGAAGGGCGGCAATGGTGGCGGAGATGGAGAG
AATGGTAGGGCGCGGATTGGGAAGAAGAGGAAGGCGAAGAAGGAAGAAGA
GGAGGGGGGGGAAGAGAAGGACATTGACGATGAGGAGTTTGAACGGATTC
GAGCTTCGTTGGGGAGGAATGAGAAAGTGGCCGCAGCGGGGAGAAGGAGT
GATAAGATGAGCGAATGAATGTCCAGCCCCCAAGCCCAGATCAACCAAGC
CTTTGGCACAAAGAAGACACTCTACGAGATCCTCGGCGTGCCTGCGGATG
CTACGGTTGCTGTTATTAGGAAGGCCTACTTTAAGATGGCCTTGACTTGT
CATCCGGACAAGTGCCCGGACGACCCCGGGGCCAATGCTCGCTTTCAAGC
CCTCTCAATTATCCACGCCACCCTCAGCGACGACGACAAGCGTCGGAGCT
ACGACGAGACGGGAGAAGTTGAATCGGAAGACGTTGAACTGAAACAAAGC
GAGCAGGAATGGTATGAGTACTGGCGGGAGCTTTTCCCCACGGTGACGGT
AGACAAGATCAAAAAGTTTCAAGGGGAGTATCAAGGGAGCGAGGAAGAAA
AGGGAGACGTGCTGAAGGCCTACAAGGAGGGCCAAGGAAAGATGAGTTGG
GTGATTGATAATGTGATGCTGGCGACGGATCAGGACGAGGAACGCTTTCG
GGAGATGATTGAGGGTGCCATCGCGGCCAAGGAAGTGAAGCGACTCAAGG
GCTTCAAGGCGGACGTCCTGAAGGACGCCAAGCGGAAGAAGCGGGCAGAA
AAGGAGGCCAAAGAAGCCGAAGAGCTGCTGCGTGCCATCCACGCAAAGCG
GGGTGTGAACGCCCTTGCCACAATGGCTACAGACAGGAGGAATCAAATGT
CCAGTTTTTACGATTCTCTGGAGGAAAAGTACGGAAAGAAGGGCGGCAAT
GGTGGCGGAGATGGAGAGAATGGTAGGGCGCGGATTGGGAAGAAGAGGAA
GGCGAAGAAGGAAGAAGAGGAGGGGGGGGAAGAGAAGGACATTGACGATG
AGGAGTTTGAACGGATTCGAGCTTCGTTGGGGAGGAATGAGAAAGTGGCC
GCAGCGGGGAGAAGGAGTGATAAGATGAGCGAATGAATGTCCAGCCCCCA
AGCCCAGATCAACCAAGCCTTTGGCACAAAGAAGACACTCTACGAGATCC
TCGGCGTGCCTGCGGATGCTACGGTTGCTGTTATTAGGAAGGCCTACTTT
AAGATGGCCTTGACTTGTCATCCGGACAAGTGCCCGGACGACCCCGGGGC
CAATGCTCGCTTTCAAGCCCTCTCAATTATCCACGCCACCCTCAGCGACG
ACGACAAGCGTCGGAGCTACGACGAGACGGGAGAAGTTGAATCGGAAGAC
GTTGAACTGAAACAAAGCGAGCAGGAATGGTATGAGTACTGGCGGGAGCT
TTTCCCCACGGTGACGGTAGACAAGATCAAAAAGTTTCAAGGGGAGTATC
AAGGGAGCGAGGAAGAAAAGGGAGACGTGCTGAAGGCCTACAAGGAGGGC
CAAGGAAAGATGAGTTGGGTGATTGATAATGTGATGCTGGCGACGGATCA
GGACGAGGAACGCTTTCGGGAGATGATTGAGGGTGCCATCGCGGCCAAGG
AAGTGAAGCGACTCAAGGGCTTCAAGGCGGACGTCCTGAAGGACGCCAAG
CGGAAGAAGCGGGCAGAAAAGGAGGCCAAAGAAGCCGAAGAGCTGCTGCG
TGCCATCCACGCAAAGCGGGGTGTGAACGCCCTTGCCACAATGGCTACAG
ACAGGAGGAATCAAATGTCCAGTTTTTACGATTCTCTGGAGGAAAAGTAC
GGAAAGAAGGGCGGCAATGGTGGCGGAGATGGAGAGAATGGTAGGGCGCG
GATTGGGAAGAAGAGGAAGGCGAAGAAGGAAGAAGAGGAGGGGGGGGAAG
AGAAGGACATTGACGATGAGGAGTTTGAACGGATTCGAGCTTCGTTGGGG
AGGAATGAGAAAGTGGCCGCAGCGGGGAGAAGGAGTGATAAGATGAGCGA
ATGA

Synonyms

Publications